SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6840

Length: 1784 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6840

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Protein spotted leaf 11; AltName: Full=Cell death-related protein SPL11 sp\|Q0IMG9.2\|SL11_ORYSJ RecName: Full=E3 ubiquitin-protein ligase SPL11; AltName: Full=Cell death-related protein SPL11; AltName: Full=Protein spotted leaf 11 gb\|AAT94160	-	-	1.99965e-42	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Spotted leaf protein, putative	-	-	1.711e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	2.172e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		2.172e-10	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		2.172e-10	%

Source	Gene names
Sma3	At1g23030; At1g71020; At3g46510; At3g54850; At4g21350; B80; F10G19.3; F12A12.30; F15H11.22; F23N20.1; F28P10.170; GSVIVT00011158001; GSVIVT00013139001; GSVIVT00024348001; OJ1119_D01.22; OSJNBa0075G19.19-1; OSJNBa0075G19.19-2; Os02g0732200; Os06g0102700; O

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311996.1	predicted protein [Populus trichocarpa]	1.96182e-44	47%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 113 aas, putative chimeric sequence, your sequence is shorter than subject: 197 - 497

Fln protein: KRPAAGRRGSPPSGHATLQKLKQTLETLVKNLGNRSASNQSVRRDAVREIKALAKENRETRLRIVEAGAVAKILPLLSCGDSQTEENAMAALFYLSLDDDNKVGLVAEGAVDSIVNVLKHGSMENRSTAAVTLTSLAMVDVNKATIGGHSDAIRALVKLLAEGDSRARKEAITALYSLCFYDDIKKELSWRGQYLC*

Protein Length: 198

Fln nts: TGAAGCGCCCCGCGGCGGGCCGGCGTGGCTCCCCGCCATCCGGCCATGCGACCCTGCAGAAACTCAAACAAACCCTAGAAACCCTAGTAAAAAACCTAGGGAATAGGAGTGCTTCTAATCAGTCTGTGAGGAGGGATGCCGTGAGGGAGATTAAGGCGCTGGCGAAGGAAAATCGCGAGACGCGTCTGCGTATTGTGGAAGCTGGGGCCGTGGCGAAGATTTTGCCTCTCTTGTCCTGTGGGGACTCTCAGACCGAAGAAAATGCCATGGCAGCGCTCTTCTACTTAAGCTTGGATGATGATAATAAAGTGGGGCTTGTGGCAGAAGGGGCTGTGGATTCGATCGTCAATGTGTTGAAGCACGGTTCCATGGAGAATCGATCCACGGCGGCCGTGACCTTGACGAGCTTGGCGATGGTGGATGTGAATAAAGCCACAATTGGGGGCCATTCGGATGCTATACGGGCCCTCGTTAAGCTACTTGCAGAAGGGGATTCGAGAGCTCGCAAGGAAGCCATTACGGCTCTCTATAGTCTCTGTTTCTATGATGATATAAAAAAAGAGCTGTCATGGCGGGGACAGTACCTTTGTTAG___TTGGGGGTTTGATTAACAGCGCAGGAGTCCCTGATGATACCCTTGAGAGGCCCCTCGGTGTTCTCAACATGTTGGCGACTGTAGTGGAAGGGAGAACGGCGATAGGTAACCATTGGGGTATCATGGGGACCCTGGTTAGGTTGCTTAAACAGGGGACTTCCAGAAGTAGAGAGCACGCTGTGGCTATCTTGTCCTCGCTATGTTGCAATAGCAAGCAGAGGGCCACGGAGGCTCGTGAGGCCGGGGCGCTGGAGCATTGCAGGCAGCTTCTCGACGACGGGACGATGAGAAGCAAGCGCAAGGCTTCAGCTCTGATGAAGGCTTTGGAGGACTATTCGGCACCGGAAGATTGTAGTTTTATTAAGACATGGTTTGGGGGTATGAAAGATGTGAATTTGAGGTTTTCAACCGATTCCACAAATCAATAAAGAACGTATATGAGATAACCATCTTCTTCGGCCATCATCTTCTTCAGCCAAAGATGAGTATGCATCAACTCACTCACTCTTATGATGGAAGAAGTCTGGTTTCTCAAACAGATTTTCATAAGTGTATGTATTGAATTTGTTGCAAAAATGGCTGTATGTATTGAATTTGTTGCAAAAATGGCTGTTGTAGCCACCTCTCGCGCTGAAGGAATTTTTGTCATAGCAGAATGTATAGATTTAGGTGCTGAACAATTTGCTCTCGAAAATGCTCCAAGAATGGCCTGTGATTTCCACTGTGCATATAGATTTGTCAAGTGCGTGTTTCATAGTCGTCTTGCAGCAGCAGGATTAGATTCATGCTGGATCTTGTCCATTGTAATATTTTAGTGAATCAGGTGTGCCACTAGGAGTGGCTTGTTCGACAAGGCTTTGCAATTGATGCATTTGTAGAAGAATTTCAGTGGTGTTTAGTATACTAAAAGTTGGAAATTAGTAGTTCGTAGTGTACAAATATCGAATCTAGCAATGCATAATAATTTTGAACATTGAAAATTATAATTTGAAGTCCATGTTTGGCTAGAGAACAATATCATTAAACAAACAATGAATCTTGCAATATATGTGTAGATTTCTTTGTATGCATTTGGATAGACTCGGCAATAAATCTCAGCTAATGCTAATCTCGAGGACTTCAGCAGTGTTCTGAGTTTTTTATTTATGACAGATATCTGGGGCTGGTTTTCTCTTAGACGTGTAGTTTATT

Fln Alignment:

Contig6840___VRRDAVREIKALAKENRETRLRIVEAGAVAKILPLLSCGDSQTEENAMAALFYLSLDDDNKVGLVAEGAVDSIVNVLKHGSMENRSTAAVTLTSLAMVDVNKATIGGHSDAIRALVKLLAEGDSRARKEAITALYSLCFYDDIK
C0PSB5______________VQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGA-SGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
777	11		88		0.923564
778	11	88			0.923564
780	88		11		0.923564
782	11	77		11	0.968132
1098	88		11		0.923564
1119	10			90	0.90298
1120		10	90		0.90298
1121	10		90		0.90298
1195	33	66			0.997452
1196	66	33			0.997452
1232	66			33	0.997452
1234	33			66	0.997452
1283	25	75			0.996473
1320	11		88		0.923564
1323		11		88	0.923564
1324	77	11	11		0.968132
1325			11	88	0.923564
1326	77		11	11	0.968132
1328	88		11		0.923564
1329		11		88	0.923564
1336	87	12			0.992554
1341	12		87		0.992554
1425	83		16		0.994512
1498		83		16	0.994512
1569		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain