SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6831

Length: 1910 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6831 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gb\|AED97261.1\| ribonuclease P subunit Rpp30 [Arabidopsis thaliana]	-	-	7.0e-22	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%

Source	Gene names
Sma3	GSVIVT00024424001; MtrDRAFT_AC149490g11v2; POPTRDRAFT_203934; RCOM_1263980;

Source	GOs	Term	Type	e value	Identity
Sma3	ribonuclease activity	GO:0004540	Molecular Function	0.0	-
Sma3	tRNA processing	GO:0008033	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNase P subunit p30	IPR002738	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59980.2	Polymerase/histidinol phosphatase-like chr5:24147207-24149783 FORWARD LENGTH=705	9.0e-25	46%
RefSeq	Arabidopsis thaliana	NP_200806.2	ribonuclease P subunit Rpp30 [Arabidopsis thaliana]	9.0e-25	46%
RefSeq	Populus trichocarpa	XP_002314208.1	predicted protein, partial [Populus trichocarpa]	2.0e-28	53%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D7SKN7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 248 aas, putative chimeric sequence, your sequence is shorter than subject: 239 - 667

Fln protein: RSRREMFSSAKVLINYTHGRNIIVSSAASRVNELRGPNDVANMSTLFGLSMEHARAALSKNCRTVIHHGLTRKKCYKSAIQVENHSPDGIFGSDKAWFNVSEVWDPISSGDGDLVLKTNLVENVQPNDKKGPSSRAKKRRRASSSQNTGVLVHNDNKRMGLNARTSTCGLQLNNSTLQTANVAKKSTDVTISDGDAVMEELKARMKNMGIPHTIPYGVHNFNIPDDVELMELTTMDTS*

Protein Length: 240

Fln nts: CGTTCGAGGAGGGAGATGTTTTCAAGTGCAAAGGTGTTGATAAACTATACACATGGACGGAATATAATTGTCTCTAGTGCAGCTTCCCGTGTAAATGAACTGCGAGGCCCTAATGATGTTGCCAATATGTCTACGCTGTTTGGTCTATCGATGGAGCATGCCCGGGCAGCTCTTTCAAAAAACTGCAGGACTGTAATTCATCATGGATTAACTCGTAAAAAGTGTTACAAGTCGGCAATTCAAGTAGAGAACCATTCACCTGATGGGATCTTTGGTTCAGACAAAGCGTGGTTTAATGTATCAGAAGTTTGGGATCCTATCTCAAGTGGGGATGGGGATCTCGTTCTGAAAACAAATCTAGTTGAAAATGTGCAGCCTAATGATAAAAAGGGTCCCTCATCTAGGGCAAAGAAGAGGCGTCGAGCATCTTCCAGTCAGAACACAGGTGTTTTAGTACATAATGACAACAAAAGGATGGGATTAAATGCAAGGACATCTACTTGTGGGCTGCAGCTAAACAATTCCACTCTGCAGACAGCCAATGTGGCAAAGAAGAGCACAGATGTAACTATTTCAGATGGTGACGCAGTCATGGAAGAACTGAAGGCGAGAATGAAAAATATGGGTATACCACATACTATTCCATATGGTGTTCACAATTTTAATATTCCTGATGATGTGGAATTAATGGAGTTAACAACAATGGACACCAGTTAG___TGTCTAATGGAGTTACATGGGTGACAGGATATAAGTCAAGTGCAGATCAATGTGTGACTCAGCAGTCATCTATAGCGAATTGTAATGCTGATATTGATCCAGTAAATGGTGCTGGTATTAAACTCCAGGCCTATCATTCAATCGTGATAAGGGTCCATCAGTAACTGTTGTTCATACTGATGCTTTGCAGGTGTGCAATGACAATTCATTACCGTCTCATGATATCAATGGCCTAGTTGGTATTAGATGTGATAATATTTTTAATAGTAACACACAGATAAAGCTACCGGAGTCAAAAAAGCATGATAGCACCATTGGCAGTGTGATGGAGCAAGTGATTCAGGTTTCAGGTTCTGTCATGCATGTGGATGGCTTAGAATCCAGAGAAAATACGAGGCTTTTCACAGAACCAAGCATACTCCAAGGAGATTTGATCTCAGATGATGCTTTAACGGACACAACAATGTCAGCAATGGGTGCCAAGGAGCTAACTGCAGTTTGTAGTAATGGTGCTTCAGAGATGGAACTTGATTGTAAAACTAAATTTTTGGCGCTTGATGACAATGGACAGCAGCTAGTGCCTCGTCGAATTACAGAGGCAGCACAAGATAAGTCAAGTAGAGATCAACAAGTGACTCAACTGTCATCTGTAGTGAATTGTAATGCTGATGTTGATCCAGTAAATGTTACTGGTATTACACCTCCAGAACCATCTTTCATTGGTGATAAGGGTCCATCAGTAACTGTTCATATGGATGCTTTGCAAGTGTGCAATGAGAATTCTTCACTGTCTGATGACATCACTGGCCTAGTTGATATTAGAAGTGATGATCTTTGTAACAGGAACCCACAGGTTATGTTACCAGTGTCAAATATAACTGATAACCTCATTGGCAATATGATGGGGAAAGTGATTCTGGTTCCAGGCTCTGGTGTAACAGAGGATGGCTTAGAATCCAGAGAAAATAAGAGGCTTTTCACAGGAACAAACACACACCAAGGAGATTTCATCTCAGATGATGCTTTAATAGATGTCACAATGCCCTCAATGGGTGCGAGGGAGCTCACTGCAGTTTGTAGTAAGGGTGCTTCAGAGATGGAACTCAGTTGTAAAACTGGGACACAAGGAAGATTACGAAGAAAAAATTGCCTAGGGTTCATGTTTTATCATTCCGTGGCATGTTTAGGTGGCC

Fln Alignment:

Contig6831___RSRREMFSSAKVLINYTHGRNIIVSSAASRVNELRGPNDVANMSTLFGLSMEHARAALSKNCRTVIHHGLTRKKCYKSAIQVENHSPDGIFGSDKAWFNVSEVWDPISSGDGDLVL
D7SKN7______________QSRKQVISNAKLLVDWTRGNNLIFSSAAPSVNELRGPYDVANLSSLLGLSMERAKAAISKNCRSLIANALRKKQFYKEAIRVE-LIPSSEFDSNEPWSGNGLKWDPISSGEGDLLL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1377	33		33	33	0.997753
1382		66		33	0.997452
1480		33		66	0.997452
1564			66	33	0.997452
1580	20		80		0.995493
1634		60		40	1.0
1652	20		80		0.995493
1772		16		83	0.994512
1788		66		33	1.0
1804	83		16		0.994512
1823	33		66		1.0
1826	12	87			0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain