SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6816

Length: 2213 nt

UniGene Fasta

>sp_v3.0_unigene6816
CGTCGTGACCTTGGCTGTGGGTTTATTGGCGTCTTCATGTGGTCACGTGGAAAGGGTGTTTGGTTTGTGAAGGCAGGCGAGCGAGCGAGCGCTGACGAAAGGAAGCGTGGAGGAAGTCACAGGTAATTAAGGCAACAGAATTGATAAATCAGAATTGATAGGCTATGTATAGATGAAAGCGCGCTCCTCTTTGAAGTTCTCGCCTTCTCAAGCCCATGTCCGTGTAAGAGGACGCCACCAGATCTCAGCTGCCTAGTGCTCCTCTTCCTGCCATGGCTCGCCGGCAATTAATTGCACAGTCTTCTTTAGGCAGAGGAGACTCAAATGTGAGCCTTTCGCAAACGGAAGAAGATAACATTAGGCTGGAATCAGAGGGGTGGTCTAATGGGAAGTCAGAAAGGGAGCATCTTCAACAATCTGGAGTTGAGTCAATGGATCAACACCTGGTAGAATTTTCAGAAACCCTAAGGACTGTAGCAAAGGCTATGAGGCGAGTGGCAGAGGGAAAAGCTCATGCACAAGAAGAGGCTGCTGAATGGAAGCGGAAATATGAACTGGAGCGACAAAGGAATTTGTTATTAGAAAAAAGAGGGCAAGAGCAAACTGATGTAGGACAGCCAAAGGAGTTCCTTCAGCAGCCAGAAAAGCGATTGCCAACTCAAGATCAGAATGGGATCTTTCACGGGAAACACAGAATATATAGCGAGGAGGTTCTTCAGAGGCAGCCATCCGAATTTGATTTGGGAACCAGTACAAAGTTACATACTGGAAAGTCATTGTTCACACTTTCTTGGGGAAATGCTGATAAAAGTACACGGCATAAGCATGATGTGGTCTCGTTCGAAAGTGGCAACATTACCACTGCAGTTCGCAGCAGTAAGCAGATAACTTTGAAGTGGGATTCACTTCCACAATCTGTGATCATCTTAACGAAGCCCAACTCCACTTCAGTAAGAGAAACATGCAAAGATATGGTCAGGTGGCTTAAAGAGGAGAAGAAAGTAAATATATTTGTTGAGAGTCGGGTGAAGGAAGAACTTCTTGAAGAAAGTCAATATTTCAATTTTGTGCAAACATGGGAAAAAGATGAAGTTTTACACTTACACACAAAGGTAGACCTTGTTATAACACTTGGTGGAGATGGAACTGTTCTTTGGGCAGCATCAATGTTTAAGGGGCCAGTTCCACCTGTTGTGCCTTTTTCTCTAGGGTCACTGGGTTTTATGACACCCTTCCAGAGTGAATTGTTTAAGGAATGCCTACAAAAGGTTATGGAAGGTCCTTTAAGCATCACACTGCGCCATCGTTTACTCTGTCGAATTGTACGAGATGAATCAAAGGATGATAGACCTATAGAAGAACCTATATTGGTGTTGAATGATGTTGCTCTTGACCGTGGAATGTCATCCTTTCTTACAAATTTGGAGTGCTACTGCGATAATTCCTTTGTAACCTGTGTCCAGGGAGATGGTTTAATTTTATCAACAACATCAGGAAGTACAGCTTACTCACTGGCAGCAGGAGGCTCAATGGTTCACCCTGAGGTGCCTGGAATCCTTTTCACTCCAATTTGCCCCCATTCATTGTCATTTAGGCCTCTCATCTTACCTGAATATGTTGTCCTTCGTGTGCAAGTCCCTTATAACAGTAGAGGGAATGCATGGGCTTCCTTTGATGGAAAGGACCGTAAGCAGCTCAATGCAGGTGATGCGCTTCTGTGTAGCATGGCTCCTTGGCCTGTACCAACTGCATGCGAGGGGGATTCAACCCATGATTTCTTACGCAGTGTTTGTGAAGGCTTACATTGGAATATGAGAAAGAAGCAGTCATTTGATGGAATTCGAGAGACCTGACTTTTCTCGTATTCAATATCTTGGCCTTAACAACAGGGGTCAGTCCATTAGTAGTAAATATTCTTTTGTAATCTGAATGCCTATTTCAGAGAATTCTAGCTTTACATGTTTAACTTGTTTCTATCATTGTAATTTTGTAACATTTTTTAAGGTATAGGTGATCTTTTGGCATCCTTAATGTTATTAAAGATTTCCTTTATTCCCACATAACGCTTGTGCAATGCAAAAATAAATTCAAAAATAAATTCTGTCAACGGTGCTAATCCAACCCTGTCAAGTTGTTTCTATTGACACTTCTGAGTTATTAAATTCTGTGTTATGTATCTGAGGTTTTATGATTATAATGAAATGAAATAAAAT

Ace file of the UniGene sp_v3.0_unigene6816

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Poly(P)/ATP NAD kinase, putative n=1 Tax=Ricinus communis RepID=B9RIE7_RICCO	-	-	0.0	63%
FL-Next	sp=Probable NAD kinase 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	63%
Sma3	Poly(P)/ATP NAD kinase, putative	-	-	1.443e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	NAD(+) kinase.	EC:2.7.1.23	-	8.011e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nicotinate and nicotinamide metabolism	00760		8.011e-23	%
Sma3	Metabolic pathways	01100		8.011e-23	%
Sma3	NADH kinase.	EC:2.7.1.86	-	1.443e-07	-

Source	Gene names
Sma3	AT3G21070; At1g21640; At3g21070; CHLREDRAFT_123446; F8K7.5; GSVIVT00015446001; GSVIVT00024584001; LOC_Os05g32210; LOC_Os11g08670; MICPUCDRAFT_15655; MICPUCDRAFT_60995; MICPUN_64658; MICPUN_67699; NADK1; NADK2; OSJNBa0073E05.16; OSTLU_35817; OSTLU_42981; O

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	NAD+ kinase activity	GO:0003951	Molecular Function	-
Sma3	phospholipase A2 activity	GO:0004623	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phospholipid metabolic process	GO:0006644	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inorganic polyphosphate/ATP-NAD kinase, predicted	IPR002504	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	ATP-NAD kinase, PpnK-type, all-beta	IPR017437	-	-
Sma3	ATP-NAD kinase, PpnK-type, alpha/beta	IPR017438	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21070.1	NADK1, ATNADK-1 NAD kinase 1 chr3:7380434-7383874 REVERSE LENGTH=530	61%
RefSeq	Arabidopsis thaliana	NP_974347.1	NAD(H) kinase 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002314082.1	predicted protein, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5JK52

Fln msg:

Fln protein: MARRQLIAQSSLGRGDSNVSLSQTEEDNIRLESEGWSNGKSEREHLQQSGVESMDQHLVEFSETLRTVAKAMRRVAEGKAHAQEEAAEWKRKYELERQRNLLLEKRGQEQTDVGQPKEFLQQPEKRLPTQDQNGIFHGKHRIYSEEVLQRQPSEFDLGTSTKLHTGKSLFTLSWGNADKSTRHKHDVVSFESGNITTAVRSSKQITLKWDSLPQSVIILTKPNSTSVRETCKDMVRWLKEEKKVNIFVESRVKEELLEESQYFNFVQTWEKDEVLHLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSLGSLGFMTPFQSELFKECLQKVMEGPLSITLRHRLLCRIVRDESKDDRPIEEPILVLNDVALDRGMSSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPEVPGILFTPICPHSLSFRPLILPEYVVLRVQVPYNSRGNAWASFDGKDRKQLNAGDALLCSMAPWPVPTACEGDSTHDFLRSVCEGLHWNMRKKQSFDGIRET*

Protein Length: 528

Fln nts: CGTCGTGACCTTGGCTGTGGGTTTATTGGCGTCTTCATGTGGTCACGTGGAAAGGGTGTTTGGTTTGTGAAGGCAGGCGAGCGAGCGAGCGCTGACGAAAGGAAGCGTGGAGGAAGTCACAGGTAATTAAGGCAACAGAATTGATAAATCAGAATTGATAGGCTATGTATAGATGAAAGCGCGCTCCTCTTTGAAGTTCTCGCCTTCTCAAGCCCATGTCCGTGTAAGAGGACGCCACCAGATCTCAGCTGCCTAGTGCTCCTCTTCCTGCC_-_ATGGCTCGCCGGCAATTAATTGCACAGTCTTCTTTAGGCAGAGGAGACTCAAATGTGAGCCTTTCGCAAACGGAAGAAGATAACATTAGGCTGGAATCAGAGGGGTGGTCTAATGGGAAGTCAGAAAGGGAGCATCTTCAACAATCTGGAGTTGAGTCAATGGATCAACACCTGGTAGAATTTTCAGAAACCCTAAGGACTGTAGCAAAGGCTATGAGGCGAGTGGCAGAGGGAAAAGCTCATGCACAAGAAGAGGCTGCTGAATGGAAGCGGAAATATGAACTGGAGCGACAAAGGAATTTGTTATTAGAAAAAAGAGGGCAAGAGCAAACTGATGTAGGACAGCCAAAGGAGTTCCTTCAGCAGCCAGAAAAGCGATTGCCAACTCAAGATCAGAATGGGATCTTTCACGGGAAACACAGAATATATAGCGAGGAGGTTCTTCAGAGGCAGCCATCCGAATTTGATTTGGGAACCAGTACAAAGTTACATACTGGAAAGTCATTGTTCACACTTTCTTGGGGAAATGCTGATAAAAGTACACGGCATAAGCATGATGTGGTCTCGTTCGAAAGTGGCAACATTACCACTGCAGTTCGCAGCAGTAAGCAGATAACTTTGAAGTGGGATTCACTTCCACAATCTGTGATCATCTTAACGAAGCCCAACTCCACTTCAGTAAGAGAAACATGCAAAGATATGGTCAGGTGGCTTAAAGAGGAGAAGAAAGTAAATATATTTGTTGAGAGTCGGGTGAAGGAAGAACTTCTTGAAGAAAGTCAATATTTCAATTTTGTGCAAACATGGGAAAAAGATGAAGTTTTACACTTACACACAAAGGTAGACCTTGTTATAACACTTGGTGGAGATGGAACTGTTCTTTGGGCAGCATCAATGTTTAAGGGGCCAGTTCCACCTGTTGTGCCTTTTTCTCTAGGGTCACTGGGTTTTATGACACCCTTCCAGAGTGAATTGTTTAAGGAATGCCTACAAAAGGTTATGGAAGGTCCTTTAAGCATCACACTGCGCCATCGTTTACTCTGTCGAATTGTACGAGATGAATCAAAGGATGATAGACCTATAGAAGAACCTATATTGGTGTTGAATGATGTTGCTCTTGACCGTGGAATGTCATCCTTTCTTACAAATTTGGAGTGCTACTGCGATAATTCCTTTGTAACCTGTGTCCAGGGAGATGGTTTAATTTTATCAACAACATCAGGAAGTACAGCTTACTCACTGGCAGCAGGAGGCTCAATGGTTCACCCTGAGGTGCCTGGAATCCTTTTCACTCCAATTTGCCCCCATTCATTGTCATTTAGGCCTCTCATCTTACCTGAATATGTTGTCCTTCGTGTGCAAGTCCCTTATAACAGTAGAGGGAATGCATGGGCTTCCTTTGATGGAAAGGACCGTAAGCAGCTCAATGCAGGTGATGCGCTTCTGTGTAGCATGGCTCCTTGGCCTGTACCAACTGCATGCGAGGGGGATTCAACCCATGATTTCTTACGCAGTGTTTGTGAAGGCTTACATTGGAATATGAGAAAGAAGCAGTCATTTGATGGAATTCGAGAGACCTGA___CTTTTCTCGTATTCAATATCTTGGCCTTAACAACAGGGGTCAGTCCATTAGTAGTAAATATTCTTTTGTAATCTGAATGCCTATTTCAGAGAATTCTAGCTTTACATGTTTAACTTGTTTCTATCATTGTAATTTTGTAACATTTTTTAAGGTATAGGTGATCTTTTGGCATCCTTAATGTTATTAAAGATTTCCTTTATTCCCACATAACGCTTGTGCAATGCAAAAATAAATTCAAAAATAAATTCTGTCAACGGTGCTAATCCAACCCTGTCAAGTTGTTTCTATTGACACTTCTGAGTTATTAAATTCTGTGTTATGTATCTGAGGTTTTATGATTATAATGAAATGAAATAAAAT

Fln Alignment:

Contig6816___QSSLGRGDSNVSLSQTEEDNIRLESEGWSNGKSEREHLQQSGVESMDQHLVEFSETLRTVAKAMRRVAEGKAHAQEEAAEWKRKYELERQRNLLLEKRGQEQTDVGQPKEFLQQPEKRLPTQDQNGIFHGKHRIYSEEVLQRQPSEFDLGTSTKLHTGKSLFTLSWG-NADKSTRHKHDVVSFESGNITTAVRSSKQITLKWDSLPQSVIILTKPNSTSVRETCKDMVRWLKEEKKVNIFVESRVKEELLEESQYFNFVQTWEKDEVLH-LHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSLGSLGFMTPFQSELFKECLQKVMEGPLSITLRHRLLCRIVRDESKDDRPIEEPILVLNDVALDRGMSSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPEVPGILFTPICPHSLSFRPLILPEYVVLRVQVPYNSRGNAWASFDGKDRKQLNAGDALLCSMAPWPVPTACEGDSTHDFLRSVCEGLHWNMRKKQSFDGIRE
Q5JK52______________ESEIGSG----SISTVSSTVSSVESE-----KAAYEFLAQTPIKSTDAHLVEFSEAMRTVAKALRRVAEGKAAAQAEAEEWRRKYELEMAHKQQRKIKGYGSCANNELEKLASQLTLETPASDQAGCC-GNHGICSHEVLQDESPGPNPRSSHKLVSRKASFRLSWGCNGDKNGQHKHDFVSFEKGDITTAERSNKQILLKWESSPQTVLFITKPNSNSVHVLCAEMVRWLKEHKKINVVVEPRVSKELLTEDSYYNFIQTWDDDEEKKMLHTKVDLIVTLGGDGTVLWAASLFKGPVPPVVAFSLGSLGFMTPFPSEQYRDCLDNVLNGPFSITLRNRLQCHVIRDAAKDELETEEPILVLNEVTIDRGISSYLTYLECYCDSSFVTCVQGDGLIISTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPHNSRGQAWASFDGKDRKLLSPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPRD

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
581	75		25		0.996473
597	20		80		0.995493
598	80			20	0.995493
600		80		20	0.995493
812			25	75	0.996473
1006	60		40		1.0
1064		28		71	1.0
1410		16		83	0.994512
1504	12	87			0.992554
1506			22	77	0.999999
1507	88		11		0.923564
1508		88	11		0.923564
1509		11		88	0.923564
1511	88			11	0.923564
1512		88		11	0.923564
1514		11	88		0.923564
1518	11		88		0.923564
1519	11	88			0.923564
1520	88	11			0.923564
1524	11		88		0.923564
1526	11	88			0.923564
1527	11			88	0.923564
1528		88	11		0.923564
1531	11			88	0.923564
1532		11	88		0.923564
1533	11		88		0.923564
1538		88	11		0.923564
1539		88	11		0.923564
1622	11	77			0.968132
1756	90		10		0.90298
1757			90	10	0.90298
2084	75			25	0.996473
2090	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
77	91	GCGA GCGA GCGA GCG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain