SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6803

Length: 2084 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene6803
ATGGGAATCACCACGAGAAGTTAGGCGTTCGTGGGCGCACCGGAAGCTGTGTTGTGTTGACCGGTTTCTAGTCGCATGGAGTAGTTGGCTGGGGCTTGTGAAAAACGGATGGACGAGAGAATTGCTATTTCAATTGTGTGCGTGGTCGCGGGGTCGAGGCGCGTTCTAGAAGCCCGGTTGCTTCGTCAATGGAGGCCATTTCCAGGTGAGTGATACAACGGCCGTTTAATATTTGCAGTGTGGGGGTTTCTTTAATAACCAGGTACGCCTTTAGCCGGCAGATAATGAAGTTTCGGCTTTTTCTTTGCAAGAAACCCCTGGTGTTTGAATACTTCTTTTTTCCAGATGCTTGTCCTCGTGGAGTTTGCGTATAGGATCCGGGGTTTTGACATATAAAGCGACACACTTAGCAGTAGGCTGATAGATTTAGAGCCATATATCATTATGTATCTCGAGTTCGCTGCCCGTAATTATTCACAGATGGGAGGAAGGCCTAGGGTTTGTGAAATGAGCGACAGCGATGATCACATGGATCGGCTACCCGATTCTTTGCTGCTGCTGATCTTTAATAAGTTGGATGATATTAAGTCTCTGGGGAGGTGTTGTGCTGTTTGTAAGAGGTTTAATACCCTGGTTCCGCAGGTGGATAACGTGATTGTTAAGGTTGATTGCGTGATATCTGGGGACGAGAGTGGATTGAATGTTAAGGGTAAGGGGATTTTTGGACATCTGATGAGATTTGTGCTGGGGAGTATTGTTAAGCCCTTGCAGGCTTTGCAACAGTTTCTGGGGCACAAGAGGGCTATTTTAGAGGAGATTTCGCATCATTCGCCTGGTGAAGTGCTGAGGAACTTTAAGGAGATTAAGCATCTGAGGATCGAGTTGCCTGGTGGGGAATTGGGGATCGAGGATGGGGTTCTCTTGAAATGGAAGGCTGAATTTGGGACCACGCTGGAGAGCTGTGTGATTCTGGGAGCCTCGTCCCTAGCAAAGAAGGGGAAGAAGAGCAATCTGTGTCTTAATAATTCTGAGGCAGAGAGTGTTGTCGATGGCGAAAACTTGGTCTCTGTGGAAGATGGCAATGGGAACAGCAATGGCAATAATGGAAATGGCAGCGGTGTCGGCATTCCGGAACCGTTCTACACGAATGGGGGTTTGAAGTTGCGTGTGGTTTGGACGATAAGCTCTCTCATCGCAGCTTCTGCCAGGCATTTTCTGCTACAACAGATCATTTGCGATCACCCTTCTCTAGAGAGCCTTGTTCTCACTGATTGCGATGGTCAGGGTATGCTATGTATGGGAAAACAGCAGCTGTGCGAGTTTAGAGAGAAACCGTTGGTAGCTTCTGCATCGTCCAATCGGACGCAAGTTCCGGCATTGAATATGAAGTTGTGGTATGCTCAATCTCTTGAGCTTCCAGGCGGTATGAGGATGGAGGGAGCTACGCTCGTTGCTATCAGGCCTAGTGATCGACCAATGGTGAAGAAGGACACTGATGCTTTCATTGCTGGCGCTTTCGAAGAGCCATTTAAAACAGCAGCAAAAGCTCTAGCCAAAGGAAGGACTTATCTCTTGGAAATGAATTCATTCTAGTAGGGTACTCTGTAGCGGGAAGCAGTTAATTTTAGCAATTCTAACCCCTATTGTATAGTGCTTTCTACCTCGATCCCCTTTTTTATTTTCTGGATGTTCATATTTTCTTGTTTACTTCTCACCAAGGATGAGGCTTTTGAGCTTCCATACTGTTTAGTCAATGCTCAAAGTATCGTAATCCAAGAAGATTGAGCAAATAGCGTGAAACTAACTTATCTCTAACCAACACAGTGTCCTGTCTTAGAAAACTTGCAAGTATGCGTTGGGTTCCTCCTCCTCTTTGCAAGAGGATTATTTTAGCAACTTGTTTCTTGCTGTTGCAGTGCTGCTCTTCTCCGCCTCTTAAAAAAATACTGCTATCATTGCCACTGGTTGTGTCAACTACGTTGAAATTCATCAACGCGATGAGGATATGCTGTAAATGCTGAGATCTTCTTTCTAGCAATGTAAATTATATTGAAACTTGTAATATGATGTTCAATTATTGATCT

Ace file of the UniGene sp_v3.0_unigene6803 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	F-box domain containing protein	-	-	4.96e-16	-

Source	Gene names
Sma3	At1g30200; At4g18380; At5g46170; F12P21.1; F28J12.40; GSVIVT00022244001; GSVIVT00028329001; LOC_Os03g20500; MCL19.23; OJ1005_B11.4; OSJNBa0088I06.3; Os01g0770400; Os01g0812200; Os03g0321300; Os05g0490300; Os05g0510400; OsI_03898; OsI_04173; OsI_11347; OsI

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46170.1	F-box family protein chr5:18715638-18716825 REVERSE LENGTH=395	55%
RefSeq	Arabidopsis thaliana	NP_199429.1	F-box protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002317281.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D5

Fln msg: your sequence is longer than subject: 383 - 348

Fln protein: MYLEFAARNYSQMGGRPRVCEMSDSDDHMDRLPDSLLLLIFNKLDDIKSLGRCCAVCKRFNTLVPQVDNVIVKVDCVISGDESGLNVKGKGIFGHLMRFVLGSIVKPLQALQQFLGHKRAILEEISHHSPGEVLRNFKEIKHLRIELPGGELGIEDGVLLKWKAEFGTTLESCVILGASSLAKKGKKSNLCLNNSEAESVVDGENLVSVEDGNGNSNGNNGNGSGVGIPEPFYTNGGLKLRVVWTISSLIAASARHFLLQQIICDHPSLESLVLTDCDGQGMLCMGKQQLCEFREKPLVASASSNRTQVPALNMKLWYAQSLELPGGMRMEGATLVAIRPSDRPMVKKDTDAFIAGAFEEPFKTAAKALAKGRTYLLEMNSF*

Protein Length: 384

Fln nts: ATGGGAATCACCACGAGAAGTTAGGCGTTCGTGGGCGCACCGGAAGCTGTGTTGTGTTGACCGGTTTCTAGTCGCATGGAGTAGTTGGCTGGGGCTTGTGAAAAACGGATGGACGAGAGAATTGCTATTTCAATTGTGTGCGTGGTCGCGGGGTCGAGGCGCGTTCTAGAAGCCCGGTTGCTTCGTCAATGGAGGCCATTTCCAGGTGAGTGATACAACGGCCGTTTAATATTTGCAGTGTGGGGGTTTCTTTAATAACCAGGTACGCCTTTAGCCGGCAGATAATGAAGTTTCGGCTTTTTCTTTGCAAGAAACCCCTGGTGTTTGAATACTTCTTTTTTCCAGATGCTTGTCCTCGTGGAGTTTGCGTATAGGATCCGGGGTTTTGACATATAAAGCGACACACTTAGCAGTAGGCTGATAGATTTAGAGCCATATATCATT_-_ATGTATCTCGAGTTCGCTGCCCGTAATTATTCACAGATGGGAGGAAGGCCTAGGGTTTGTGAAATGAGCGACAGCGATGATCACATGGATCGGCTACCCGATTCTTTGCTGCTGCTGATCTTTAATAAGTTGGATGATATTAAGTCTCTGGGGAGGTGTTGTGCTGTTTGTAAGAGGTTTAATACCCTGGTTCCGCAGGTGGATAACGTGATTGTTAAGGTTGATTGCGTGATATCTGGGGACGAGAGTGGATTGAATGTTAAGGGTAAGGGGATTTTTGGACATCTGATGAGATTTGTGCTGGGGAGTATTGTTAAGCCCTTGCAGGCTTTGCAACAGTTTCTGGGGCACAAGAGGGCTATTTTAGAGGAGATTTCGCATCATTCGCCTGGTGAAGTGCTGAGGAACTTTAAGGAGATTAAGCATCTGAGGATCGAGTTGCCTGGTGGGGAATTGGGGATCGAGGATGGGGTTCTCTTGAAATGGAAGGCTGAATTTGGGACCACGCTGGAGAGCTGTGTGATTCTGGGAGCCTCGTCCCTAGCAAAGAAGGGGAAGAAGAGCAATCTGTGTCTTAATAATTCTGAGGCAGAGAGTGTTGTCGATGGCGAAAACTTGGTCTCTGTGGAAGATGGCAATGGGAACAGCAATGGCAATAATGGAAATGGCAGCGGTGTCGGCATTCCGGAACCGTTCTACACGAATGGGGGTTTGAAGTTGCGTGTGGTTTGGACGATAAGCTCTCTCATCGCAGCTTCTGCCAGGCATTTTCTGCTACAACAGATCATTTGCGATCACCCTTCTCTAGAGAGCCTTGTTCTCACTGATTGCGATGGTCAGGGTATGCTATGTATGGGAAAACAGCAGCTGTGCGAGTTTAGAGAGAAACCGTTGGTAGCTTCTGCATCGTCCAATCGGACGCAAGTTCCGGCATTGAATATGAAGTTGTGGTATGCTCAATCTCTTGAGCTTCCAGGCGGTATGAGGATGGAGGGAGCTACGCTCGTTGCTATCAGGCCTAGTGATCGACCAATGGTGAAGAAGGACACTGATGCTTTCATTGCTGGCGCTTTCGAAGAGCCATTTAAAACAGCAGCAAAAGCTCTAGCCAAAGGAAGGACTTATCTCTTGGAAATGAATTCATTCTAG___TAGGGTACTCTGTAGCGGGAAGCAGTTAATTTTAGCAATTCTAACCCCTATTGTATAGTGCTTTCTACCTCGATCCCCTTTTTTATTTTCTGGATGTTCATATTTTCTTGTTTACTTCTCACCAAGGATGAGGCTTTTGAGCTTCCATACTGTTTAGTCAATGCTCAAAGTATCGTAATCCAAGAAGATTGAGCAAATAGCGTGAAACTAACTTATCTCTAACCAACACAGTGTCCTGTCTTAGAAAACTTGCAAGTATGCGTTGGGTTCCTCCTCCTCTTTGCAAGAGGATTATTTTAGCAACTTGTTTCTTGCTGTTGCAGTGCTGCTCTTCTCCGCCTCTTAAAAAAATACTGCTATCATTGCCACTGGTTGTGTCAACTACGTTGAAATTCATCAACGCGATGAGGATATGCTGTAAATGCTGAGATCTTCTTTCTAGCAATGTAAATTATATTGAAACTTGTAATATGATGTTCAATTATTGATCT

Fln Alignment:

Contig6803___DHMDRLPDSLLLLIFNKLDDIKSLGRCCAVCKRFNTLVPQVDNVIVKVDCVISGDESGLNVKGKGIFGHLMRFVLGSIVKPLQALQQFLGHKRAILEEISHHSPGEVLRNFKEIKHLRIELPGGELGIEDGVLLKWKAEFGTTLESCVIXXXXXXXXXXXXSNLCLNNSEAESVVDGENLVSVEDXXXXXXXXXXXXXGVGIPEPFYTNGGLKLRVVWTISSLIAASARHFLLQQIICDHPSLESLVLTDCDGQGMLCMGKQQLCEFREKPLVASASSNRTQVPALNMKLWYAQSLELPGGMRMEGATLVAIRPSDRPM-VKKDTDAFIAGAFEEPFKTAAKALAKGRTYLLEMNSF
D5A9D5______________DHLDRIPDSLLLLIFNKVADIKALGRCCAVSKRFNFLVPQVENVVVKVDCVISGEDGGLNAKGKGIIGHLVRFMIGSIVKPLQALQHFIGPRKAILAEVSHHSPAEVLKNFKEIQHLRIELPGGELGVEDGVLLKWKAEFGSTLESCVIFGAASVLSKGLKTG-SRRKIQLVSDDEPEGLEGLEDDNG------------SIPDSFYINSWLKLRVVWTISSLIAASARHFLLKEIIHDHPTLQNLVLTDADGQGTLCMGREQLCEFRDKPLAASPSSNRTQVPALNMKLRYAPTLELPSGTVMQGATLVTIRPSDQTIAAKKESEGFIVGAFEGPYRAAAKILSRRRTYLLEMNSF

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1625	14	85			0.993533
1652		42	57		1.0
1665		83	16		0.994512
1669		83		16	0.994512
1670			16	83	0.994512
1673	16			83	0.994512
1676		16		83	0.994512
1683		16	83		0.994512
1684	16			83	0.994512
1687	33	66			1.0
1688			16	83	0.994512
1737		50	50		1.0
1821			40	60	1.0
1825		20		80	0.995493
1929		16		83	0.994512
1972	33		66		1.0
2020	75		25		0.996473
2040	75	25			0.996473
2041		25	75		0.996473
2043	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain