SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6795

Length: 1479 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6795

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AAL15341.1\| At2g47630/F17A22.2 [Arabidopsis thaliana] gb\|AAM14848.1\| putative phospholipase [Arabidopsis thaliana] gb\|AAC63619.2\| putative phospholipase [Arabidopsis thaliana] gb\|AAM	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	67%
Sma3	Monoglyceride lipase, putative	-	-	3.852e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acylglycerol lipase.	EC:3.1.1.23	-	7.542e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerolipid metabolism	00561		7.542e-19	%
Sma3	Metabolic pathways	01100		7.542e-19	%

Source	Gene names
Sma3	AT2G39420; At1g11090; At1g11090/T19D16_3; At1g77420; At1g77420/T5M16_2; At2g39400; At2g39410; At2g39420; At2g39420/F12L6.8; At2g47630; At3g55180; At3g55190; At5g14980; At5g16120; F26K9_290; F2G14_100; F2P24.13; GSVIVT00004266001; GSVIVT00013671001; GSVIVT

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62860.1	alpha/beta-Hydrolases superfamily protein chr3:23239577-23242143 REVERSE LENGTH=348	67%
RefSeq	Arabidopsis thaliana	NP_191845.2	esterase/lipase/thioesterase family protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002302714.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7U297

Fln msg:

Fln protein: MEVYKYEEEFIRNSRGVRLFTCRWLPLLTAPKGLVFLCHGYGMECSVFMRECGIRLARAGYGVFGIDYEGHGKSKGPRCYIKRFSNIVNDCNNFFKSICVRKEYEEMPRFLYGESMGGAVVLLLHRKEPTFWNGAVLVAPMCKISEKIKPHPVVVKFLIKLAVFIPTWKIVPTKDVIDSAFRDPIKREQVRSNELIYQDKPRLKTALEMLKVSLDLEDRLQEVTVPFLVLHGEDDSVTDPSVSEALYNGAASFDKTIKLYPGMWHALTSGEPDHNVDLVFADIISWLDRRLHTRTPLLTPNDQEEKTFLTNQSRVVPIICVGGGGLPETLGTRRDADKPDTNFLRSSL*

Protein Length: 350

Fln nts: ACACATTGTTAATTGGATTATGCGAGATTTTTTGGATTGGGATAGGAGCAGTCGATATTATCCTTTCGTTTCTGAACCATTTATAAAAACCCATTGGTGGAATCTGATAAATGCGGCTCCGGTGGCCCCTGGTCTCTGGTTTTGGCTGGGAAAATTCTTGTTTCGGTGGGGTTTTAGCCATTGATTAGCAGCG_-_ATGGAGGTCTACAAGTATGAAGAGGAATTCATTCGTAATTCTAGAGGAGTGCGATTATTTACCTGTAGGTGGCTGCCTCTGTTGACAGCTCCAAAGGGTCTGGTTTTCCTATGCCACGGGTATGGAATGGAATGCAGTGTTTTCATGAGAGAATGTGGAATAAGGCTTGCCCGTGCTGGATATGGCGTGTTCGGAATCGATTACGAGGGCCATGGGAAATCAAAAGGCCCCAGATGTTATATTAAGAGATTTAGCAATATTGTCAATGACTGTAACAATTTCTTCAAGAGTATCTGTGTTCGTAAAGAGTATGAAGAAATGCCCAGATTCCTGTATGGAGAATCCATGGGCGGTGCAGTTGTGCTTCTGCTGCACAGAAAGGAACCTACGTTTTGGAATGGAGCTGTTCTTGTAGCTCCCATGTGCAAGATATCAGAGAAGATAAAACCACATCCTGTGGTGGTCAAGTTTCTAATAAAACTAGCAGTATTTATTCCCACATGGAAGATAGTCCCCACCAAGGACGTCATAGATTCGGCCTTCCGGGATCCCATCAAGAGAGAACAGGTTCGATCCAACGAGCTTATATATCAAGACAAGCCCCGATTAAAAACAGCTCTGGAAATGCTCAAAGTGAGCCTGGACTTGGAGGACCGGCTTCAGGAGGTGACGGTACCGTTCTTGGTATTGCATGGAGAGGACGACAGCGTGACAGACCCTTCGGTGAGCGAGGCGCTGTACAATGGGGCAGCTAGCTTTGACAAGACCATCAAACTCTATCCGGGCATGTGGCACGCCCTCACCAGCGGGGAACCCGATCACAACGTGGATTTGGTCTTTGCAGATATCATCTCCTGGCTCGATCGCAGGCTCCACACTCGCACTCCATTGCTCACACCCAACGACCAAGAAGAGAAAACATTTTTAACCAATCAATCTCGCGTTGTCCCCATTATTTGCGTTGGCGGCGGCGGGCTGCCAGAGACCCTCGGCACCCGTCGCGATGCAGATAAACCCGACACCAATTTTCTCCGCTCATCGCTCTGA___TTATGAGAAAAACTTGAATCAAACCGCATCGCTACTGTAATTGTAACCGTAATGAGCCTCTTAGTCTTTTGGAATTGTGTGTATCAGTTAAGAAAGAAATACATAAATTTTTATGGATCTTCAGAAGATGTGGATTGGTTTACAATCAAGCAAAACTTCTTCCTACACAGTTTCTTTGTACAGCAAATTTTACCCACAATAAAACGATGATCATCTCTGAATTCCCCAGTAATTAAAAG

Fln Alignment:

Contig6795___MEVYKYEEEFIRNSRGVRLFTCRWLPLLTAPKGLVFLCHGYGMECSVFMRECGIRLARAGYGVFGIDYEGHGKSKGPRCYIKRFSNIVNDCNNFFKSICVRKEYEEMPRFLYGESMGGAVVLLLHRKEPTFWNGAVLVAPMCKISEKIKPHPVVVKFLIKLAVFIPTWKIVPTKDVIDSAFRDPIKREQVRSNELIYQDKPRLKTALEMLKVSLDLEDRLQEVTVPFLVLHGEDDSVTDPSVSEALYNGAASFDKTIKLYPGMWHALTSGEPDHNVDLVFADIISWLDRR------------LHTRTPLLTPNDQEEKTFLTNQSRV
D7U297______________MEV-EYQEEYIRNSRGVQLFTCRWLPF-SPPKALVFLCHGYGMECSSFMRGCGTRLASAGYAVIGIDYEGHGRSRGARCYIKKFNNIVSDCNDFFKSVCVQEEYRDKNRFLYGESMGGAVALLLHKKDPNFWNGAVLVAPMCKISEKVKPHPVVVNILTKVEEIIPKWKIVPTKDVIDSAFKDPVKREEIRNNKLIYQDKPRLKTALEMLRTSMSLEDSLHEVTLPFFVLHGEADTVTDPDVSRALYGQASSRDKTMKLYPGMWHGLTSGEPDENIEMVFSDIITWLDKRSTGDSAALTFQPLHYTDPVIKTSTTSTSTEMVNREKL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
275		14		85	0.993533
596			10	90	0.90298
769	10		90		0.90298
771	11			88	0.923564
888		90		10	0.90298
1305		20		80	0.999996
1334	75	25			1.0
1335	75			25	1.0
1350	71			28	1.0
1356			16	83	0.994512
1381	23		76		1.0
1428	33	66			1.0
1468	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain