SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6786

Length: 3032 nt

UniGene Fasta

>sp_v3.0_unigene6786
TTTTAATTAATTAGTTTCATTAAATACGTTCAGCGCTGCAATGAAATCCATATACCTACTTCATGGCATTTAGAGCTCTCTGTACGAGGACACCCTGCCCGTTCAGTCGCTCGCCTGGAGAAGAGCGGGATCTGATTTGGGCAACGGATGATTGAAGGGCCAGGCGAAGTATGATGAGGTGCTGGTTTCGAAACCATGGCAGTGAAACTCAGAACAGAGAACGAGATGACATCTATTGATGACGTTACACGTTCAGTTAGTTCTCTATCGACAGCAAGAACGGTAGGGTTTTGCAGTTTGTTTTAGAGTTAATCGATGCTTTAATCCATGAATTTAAGCCACAGCCGGGGCATTTGCCCGGTTCATTTAGGAAGGAGGCCACAGAGCCCGGATCCTTGAATCTGCCTGCACTGTGCGAATTGCAGATCAAGATGGTATTGGAAACATGGTTCAATCGCTTGGGAAATTCCGTGAGCAGTACCTTCAAAACGGCCATAAAGAAGGCCAGCTTCGACCCTTGGAAAAACAAGAATAGGCTGAAATCTGACAAGGCTTTGATCGGGGTTCTGGCCTTCGAGGTAGCGAATTTGATGTCGAAATTGATCCAGCTCTGGCACTCATTGTGTGAAGAGGAAATTGTTCGGATTCGAGCCGAGGTCATAACGTTGGAAGGAGTGAGGAGAGTCGTGTCGAGTGACGATGGCTTTCTCCTAGGGCTTGCCTGTGCAGAGAAGCTGGACAACCTGACAGTCTTGGCCGGAGCCGTGGCTAGGCTGGGGAAGAAATGTCAAGACCCGGCCTTGCAAGGTTTTGAGCATGTTTATGAGGATTTGCTTTGTAATAAGATTGATTTCAAGGGTCTTGTGTTTTCTCCGAAGGAAATAGAGAGTAAAATAAAGAAAATGGAGAAATATGCTTCCGCTACTACGAATCTTTACAGAGAGATGGAAGTTCTTGCTGATCTGGAGCAGACTTTGCGGAGAATGCAAAGCGGGGATGACGGAACTAGGCTCAAGGATGGCAGCTTGCTTTCAGTTCAGCAGAAGGTTTCTTGGCAACGGCAAGAGACGAAGTATTTACGAGAGATTTCGTTGTGGAATCGGTCCTTTGATGCAATAGTGGGTTTGTTGGCACAGACAGCGTTTACAATATATGGGAGAATCAGGTCTGTGTTTGGAGTTCCTCAATTAGATTCGTTTGCTGTGAATCAATTGTCTACCAATTTGGATTCCTTTCCTCGCAGCCGTTCGGTATCAGCCTTGGCTTCAGGACCTTATCCGACTGAGAAAAAGGAGGTAAGGTTTTGTTCGGGACCTCTTGAGAGGGTTCCGATGGAATGGAACCCGGGTCGTAGATTGGGCCCTGTTTTGAACCGTCTGGGATCTAATAGGGTTTGGCAAGACAGGGATCGGCATACCATTGTAGGTAGCGTAAAATCTTTTGTGTCTGAAAATAAGGGGTTAATGACATGGGGATCTAGTAGTCCAGCCAGGCCCTCTCAGCAATTTGTGACAAATGGAACTGATCAGTTGACAAGTCAAAATTCCTCCAATGTTGAGTCAACTGTTGGCTGTATGACGACTTCAGTCTCTGGGAACGCAGATAATAGTGATTATCAAACACCAATGGCTGTGAATGGTTTTCACTCTGCTTCTACTTCTGGCAATGCCTTCCTTCCCCACAGTGGACAGCTGAAAACCAGTCCATTAAATGGCACAAAATGTAAATTACTGAATGCACCACCTTCAACACTTGGAGGTGCTGCTCTTGCCTTGCATTATGCCAATGTTATCATTGTCATTGAGAAGCTGGTGCAGTACCCGCACTTGATTGGTCCTGATGCTAGAGACGATCTTTATCAAATGTTACCAACTAGTCTCAGGACGGCACTCCGGACAAGACTAAAGTCGTATGCAAAGAATATGGCTTCGACTAGGTACAATGGTGCTCTTGCAGCAAATTGGAATGACGCTTTGGCTAGGATACTGGAGTGGCTAGCTCCCCTGGCACACAACATGATAAGGTGGCAGACTGAACGCAATTTTGAGCAACAACACCTGGTTCCTAGGACCAACGTTCTTCTGCTTCAAACACTCTACTTTGCTAATCAGGTGAAGACAGAACTAGCAATCACAGAGCTTCTTGTTGGCTTAAACTACATCTGTAGATATGAGCAGGAAATCAGATCCAATGGTCATATGGAATGCGCAAACAGCCATGACTATGATGAATATTTAGAGTGGCAGTTGTGATCCTCTGGTTTATCTTCCAGATTGTCAAAAGGAATGTGGGGGACTTTGAAGGTAGTCTTTCACATGGGGTTCAGATATTGTATGCCATCATTTAGTATTGGTAAGTTGACTGCTGCCAAGGGTTTGGACGCTCTCCAACCATGAAATGGTCGGAGTTCAGCATGTGGGCAACGGTTTCATCATCTGAAGGATCACATTTTATATCTTCTATTTCAAGGTAGTAGGAAAACTTTCATTGTACTCTTATCTCTGTTTTTCTCTTTTGAAAGAGATGTTCAAAGCGAGTTATCTAACTCTTTTGTATTATGGAGTAACATAATATTTGTTCACCTCTTGATTTTCATCCAAGAGCAGTTATGTACAAGCAGGACAAGTTAGTTATCCTTATGTCAAATATACAATCTTAGACGATCAATTGCTATAATAGCTGTTTCTGGCAAACACTAGAGAAAAGAAACTGGGATACACATTACAGGTTGTAGCGTTGCTTGAGTATCTGGGGCATCTTTTGCAAAATATGCCTTGTAAATTGTTTTGAAAGGTCTTCCGTTGAGGTGTTGCTGAATAATGGATAACCACAAAATTAGTCTCTTGAAATCAGCTTCCTAGGGAGGTATCTAATTTGCTGGTTTGTAAGGTGTTGTTTTGAACATGGGTTTCTCCTGTCAAAGTCTATTTTCTATTGTGTTTTTCGATAGGCCTGAGAAGATCCATGAAAGGATCAGCTGAATGCAGTTTAGTATTTTGTTTGCAATCAGCTGTAGACCAAATTGGCATCAA

Ace file of the UniGene sp_v3.0_unigene6786

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF668 multi-domain protein	-	-	3.0e-40	63%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	42%

Source	Gene names
Sma3	ACRE137; At3g23160; At5g04550; At5g04550/T32M21_140; At5g51670; GSVIVT00020176001; GSVIVT00021692001; GSVIVT00034973001; GSVIVT00038487001; Os04g0169500; Os12g0146500; OsI_14830; PHYPADRAFT_191194; PHYPADRAFT_22604; PHYPADRAFT_80361; POPTRDRAFT_1102228; P

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF668	IPR007700	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HL47

Fln msg:

Fln protein: MVLETWFNRLGNSVSSTFKTAIKKASFDPWKNKNRLKSDKALIGVLAFEVANLMSKLIQLWHSLCEEEIVRIRAEVITLEGVRRVVSSDDGFLLGLACAEKLDNLTVLAGAVARLGKKCQDPALQGFEHVYEDLLCNKIDFKGLVFSPKEIESKIKKMEKYASATTNLYREMEVLADLEQTLRRMQSGDDGTRLKDGSLLSVQQKVSWQRQETKYLREISLWNRSFDAIVGLLAQTAFTIYGRIRSVFGVPQLDSFAVNQLSTNLDSFPRSRSVSALASGPYPTEKKEVRFCSGPLERVPMEWNPGRRLGPVLNRLGSNRVWQDRDRHTIVGSVKSFVSENKGLMTWGSSSPARPSQQFVTNGTDQLTSQNSSNVESTVGCMTTSVSGNADNSDYQTPMAVNGFHSASTSGNAFLPHSGQLKTSPLNGTKCKLLNAPPSTLGGAALALHYANVIIVIEKLVQYPHLIGPDARDDLYQMLPTSLRTALRTRLKSYAKNMASTRYNGALAANWNDALARILEWLAPLAHNMIRWQTERNFEQQHLVPRTNVLLLQTLYFANQVKTELAITELLVGLNYICRYEQEIRSNGHMECANSHDYDEYLEWQL*

Protein Length: 608

Fln nts: TTTTAATTAATTAGTTTCATTAAATACGTTCAGCGCTGCAATGAAATCCATATACCTACTTCATGGCATTTAGAGCTCTCTGTACGAGGACACCCTGCCCGTTCAGTCGCTCGCCTGGAGAAGAGCGGGATCTGATTTGGGCAACGGATGATTGAAGGGCCAGGCGAAGTATGATGAGGTGCTGGTTTCGAAACCATGGCAGTGAAACTCAGAACAGAGAACGAGATGACATCTATTGATGACGTTACACGTTCAGTTAGTTCTCTATCGACAGCAAGAACGGTAGGGTTTTGCAGTTTGTTTTAGAGTTAATCGATGCTTTAATCCATGAATTTAAGCCACAGCCGGGGCATTTGCCCGGTTCATTTAGGAAGGAGGCCACAGAGCCCGGATCCTTGAATCTGCCTGCACTGTGCGAATTGCAGATCAAG_-_ATGGTATTGGAAACATGGTTCAATCGCTTGGGAAATTCCGTGAGCAGTACCTTCAAAACGGCCATAAAGAAGGCCAGCTTCGACCCTTGGAAAAACAAGAATAGGCTGAAATCTGACAAGGCTTTGATCGGGGTTCTGGCCTTCGAGGTAGCGAATTTGATGTCGAAATTGATCCAGCTCTGGCACTCATTGTGTGAAGAGGAAATTGTTCGGATTCGAGCCGAGGTCATAACGTTGGAAGGAGTGAGGAGAGTCGTGTCGAGTGACGATGGCTTTCTCCTAGGGCTTGCCTGTGCAGAGAAGCTGGACAACCTGACAGTCTTGGCCGGAGCCGTGGCTAGGCTGGGGAAGAAATGTCAAGACCCGGCCTTGCAAGGTTTTGAGCATGTTTATGAGGATTTGCTTTGTAATAAGATTGATTTCAAGGGTCTTGTGTTTTCTCCGAAGGAAATAGAGAGTAAAATAAAGAAAATGGAGAAATATGCTTCCGCTACTACGAATCTTTACAGAGAGATGGAAGTTCTTGCTGATCTGGAGCAGACTTTGCGGAGAATGCAAAGCGGGGATGACGGAACTAGGCTCAAGGATGGCAGCTTGCTTTCAGTTCAGCAGAAGGTTTCTTGGCAACGGCAAGAGACGAAGTATTTACGAGAGATTTCGTTGTGGAATCGGTCCTTTGATGCAATAGTGGGTTTGTTGGCACAGACAGCGTTTACAATATATGGGAGAATCAGGTCTGTGTTTGGAGTTCCTCAATTAGATTCGTTTGCTGTGAATCAATTGTCTACCAATTTGGATTCCTTTCCTCGCAGCCGTTCGGTATCAGCCTTGGCTTCAGGACCTTATCCGACTGAGAAAAAGGAGGTAAGGTTTTGTTCGGGACCTCTTGAGAGGGTTCCGATGGAATGGAACCCGGGTCGTAGATTGGGCCCTGTTTTGAACCGTCTGGGATCTAATAGGGTTTGGCAAGACAGGGATCGGCATACCATTGTAGGTAGCGTAAAATCTTTTGTGTCTGAAAATAAGGGGTTAATGACATGGGGATCTAGTAGTCCAGCCAGGCCCTCTCAGCAATTTGTGACAAATGGAACTGATCAGTTGACAAGTCAAAATTCCTCCAATGTTGAGTCAACTGTTGGCTGTATGACGACTTCAGTCTCTGGGAACGCAGATAATAGTGATTATCAAACACCAATGGCTGTGAATGGTTTTCACTCTGCTTCTACTTCTGGCAATGCCTTCCTTCCCCACAGTGGACAGCTGAAAACCAGTCCATTAAATGGCACAAAATGTAAATTACTGAATGCACCACCTTCAACACTTGGAGGTGCTGCTCTTGCCTTGCATTATGCCAATGTTATCATTGTCATTGAGAAGCTGGTGCAGTACCCGCACTTGATTGGTCCTGATGCTAGAGACGATCTTTATCAAATGTTACCAACTAGTCTCAGGACGGCACTCCGGACAAGACTAAAGTCGTATGCAAAGAATATGGCTTCGACTAGGTACAATGGTGCTCTTGCAGCAAATTGGAATGACGCTTTGGCTAGGATACTGGAGTGGCTAGCTCCCCTGGCACACAACATGATAAGGTGGCAGACTGAACGCAATTTTGAGCAACAACACCTGGTTCCTAGGACCAACGTTCTTCTGCTTCAAACACTCTACTTTGCTAATCAGGTGAAGACAGAACTAGCAATCACAGAGCTTCTTGTTGGCTTAAACTACATCTGTAGATATGAGCAGGAAATCAGATCCAATGGTCATATGGAATGCGCAAACAGCCATGACTATGATGAATATTTAGAGTGGCAGTTGTGA___TCCTCTGGTTTATCTTCCAGATTGTCAAAAGGAATGTGGGGGACTTTGAAGGTAGTCTTTCACATGGGGTTCAGATATTGTATGCCATCATTTAGTATTGGTAAGTTGACTGCTGCCAAGGGTTTGGACGCTCTCCAACCATGAAATGGTCGGAGTTCAGCATGTGGGCAACGGTTTCATCATCTGAAGGATCACATTTTATATCTTCTATTTCAAGGTAGTAGGAAAACTTTCATTGTACTCTTATCTCTGTTTTTCTCTTTTGAAAGAGATGTTCAAAGCGAGTTATCTAACTCTTTTGTATTATGGAGTAACATAATATTTGTTCACCTCTTGATTTTCATCCAAGAGCAGTTATGTACAAGCAGGACAAGTTAGTTATCCTTATGTCAAATATACAATCTTAGACGATCAATTGCTATAATAGCTGTTTCTGGCAAACACTAGAGAAAAGAAACTGGGATACACATTACAGGTTGTAGCGTTGCTTGAGTATCTGGGGCATCTTTTGCAAAATATGCCTTGTAAATTGTTTTGAAAGGTCTTCCGTTGAGGTGTTGCTGAATAATGGATAACCACAAAATTAGTCTCTTGAAATCAGCTTCCTAGGGAGGTATCTAATTTGCTGGTTTGTAAGGTGTTGTTTTGAACATGGGTTTCTCCTGTCAAAGTCTATTTTCTATTGTGTTTTTCGATAGGCCTGAGAAGATCCATGAAAGGATCAGCTGAATGCAGTTTAGTATTTTGTTTGCAATCAGCTGTAGACCAAATTGGCATCAA

Fln Alignment:

Contig6786___MVLETWFNRLGNSVSSTFKTAIKKASFDPWK--NKNRLKSDKALIGVLAFEVANLMSKLIQLWHSLCXXXXXXXXXXXXTLEGVRRVVSSDDGFLLGLACAEKLDNLTVLAGAVARLGKKCQDPALQGFEHVYEDLLCNKIDFKGLVFSPXXXXXXXXXXXXYASATTNLYREMEVLADLEQTLRRMQSGDDGTRLKDGSLLSVQQKVSWQRQETKYLREISLWNRSFDAIVGLLAQTAFTIYGRIRSVFGVPQLDSFAVNQLSTNLDS--FPRSRSVSALA-SGPYPTEKKEV-RFCSGPLERVPMEWNPGRRL-------GPVLNRLGSNRVWQDRDRHTI-----VGSVKSFVSENKGLMTWGSSSPARPSQQFVTNGTDQLTSQNSSNVESTVGCMTTSVSGNADNSDYQTPMAVNG--FHSASTSGNAFLPHSGQLKTSP-LNGTKCKLLNAPPSTLGGAALALHYANVIIVIEKLVQYPHLIGPDARDDLYQMLPTSLRTALRTRLKSYAKNMASTRYNGALAANWNDALARILEWLAPLAHNMIRWQTERNFEQQHLVPRTNVLLLQTLYFANQVKTELAITELLVGLNYICRYEQEIRSNGHMECANSHDYDEYLE
B9HL47______________MVAESWFRSL-------------------WKIPQKREPGPQKAVVGVLAFEVTSLMSKLVHLWHSLSDKQVARLREEIGSSEGIKKLIAEDDDFIGRLICLEMMESMVHVAKPVARIGNKCSDPSLKGFEHLFDEMIKIHADPYGWGFSWKKMDKKVKKMERFISVNSTLYQEMEMLSDLEQTVRRMKGCDP----EPNNLLDYQKKLVWKQHEVRNLKEISLWNKTYDYTVRLLVRSLFTIYRRISHVFGI---DSTVYPGESKALDSDYFYRSQSVSALLQSSVHPSENSTLPRFSSGPLGKFTANSGPILKSSKNNFYSGPLGGSIAKSGPISEKNRNLNFFSGPLGGPTTKSGPISGITKTGKKSWWTPQSPAFLGRKPPSKPNRLTQVGPFKGCMVASNTSPVANC-YLSSADVHSRNLKGARESNADHLPLGNVSRTGPSIFSSQHKLLQALPETLGGAALALHYANVIVVIEKLAASPHLIGHDARDDLYNMLPARVRAALRERLKPYSKSLDSPVYDTVLAGEWTEAMTSILEWLAPLAHNMIRWQSERSYEQQTFVSRTNVLLVQTLYFANQEKTESAITELLVGLNYIWRFGRELNTKALQECASSRVFDEYLE

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
49		33	66		1.0
50		33	66		1.0
52			33	66	0.997452
86	33	66			1.0
95		75		25	0.996473
96		75	25		0.996473
97		75	25		0.996473
98			25	75	0.996473
100		25	25		0.995533
170	80			20	0.995493
172		20	80		0.995493
177	80		20		0.995493
178			20	80	0.995493
218	40		60		1.0
225	80		20		0.995493
246	83		16		0.994512
342		14	85		0.993533
345	85		14		0.993533
479			83	16	0.994512
480		83	16		0.994512
481	83		16		0.994512
851		12		87	0.992554
1381	33	66			0.997452
1680	22			77	0.999999
1799		11		88	0.923564
1800	11			88	0.923564
1801			88	11	0.923564
1894		80		20	0.995493
1896		80	20		0.995493
1897		80	20		0.995493
2016		87	12		0.992554
2017	87		12		0.992554
2018	87		12		0.992554
2423	9		90		0.999842
2775	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain