SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6784

Length: 1763 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6784

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative peptide transport protein [Oryza sativa Japonica Group]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46050.1	ATPTR3, PTR3 peptide transporter 3 chr5:18675062-18679071 REVERSE LENGTH=582	57%
RefSeq	Arabidopsis thaliana	NP_199417.1	peptide transporter PTR3-A [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002301861.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR41

Fln msg: your sequence is longer than subject: 506 - 449

Fln protein: MVLLTLAVSLPSLRPPECKSEYKLCEKASKFQVGVFYSALYILAVGTGGTKPNISTMGADQFDDFDIKEKHQKFSFFNWWMFSAFTGTLIGQTFLIYIQEHVGFSLGYGIPTVGLIISVVIFLIGTPFYRHKAQKGNPFGRMAQVIVAAARKWRISAPSDPIQLHELDYKEYVAKRRFPIHHTRILRFLDKAATNDGSTSAWKLCPVTQVEETKLMIKLLPIWIAMLMPSAMTAQVNTLFVKQGTRLNRHLGSHFEIPPGCVTAFVTMSMLVFTVIYDRVLVGILRRFTGNPRGITILQRMGIGLAIHVLVMGVASITEIQRIRVVKVHRLQGNQKAVTPLTIFILLPQFLLMGIADSFVEVGKLEFFYDQAPESMQSIGTALFASTLGIGNFISSFLLTVMTNITGRKGHTEWILDNLNASRLYYYYALLAVLNVLNLIFFLAVSRSYVYKRETSEAFVGHSNGHVGTVTVESFALPVVTKDHTYEKEQQSMEITMVKSQGKSR*

Protein Length: 507

Fln nts: CCTGTTATCGGCGCATATATTGCAGACACTCACTGGGGACGCTATTGGACATTTACAGTGTTTTCGTGTATTTATATACTGGGA_-_ATGGTACTTTTGACATTAGCCGTCTCATTGCCATCCCTGAGACCACCGGAGTGCAAATCGGAGTACAAGTTATGTGAGAAAGCTTCCAAGTTTCAAGTTGGGGTTTTCTACTCTGCTTTGTACATTCTTGCTGTGGGCACTGGCGGTACAAAGCCCAACATCTCCACCATGGGTGCAGATCAGTTCGATGATTTTGATATCAAGGAGAAGCATCAGAAGTTCTCCTTCTTCAATTGGTGGATGTTCAGTGCGTTTACTGGGACATTGATTGGACAGACTTTTCTGATATATATTCAGGAGCATGTGGGATTCAGTTTGGGTTATGGAATTCCCACGGTTGGATTGATCATATCCGTTGTAATATTCTTAATTGGCACTCCGTTTTACAGACACAAAGCTCAGAAAGGAAATCCATTCGGTCGCATGGCGCAGGTAATTGTTGCAGCGGCTCGTAAATGGAGGATTAGTGCACCTTCTGACCCAATTCAACTGCATGAACTGGACTACAAAGAGTATGTTGCTAAAAGAAGATTTCCTATTCATCATACTCGGATTTTGAGATTTCTGGATAAAGCAGCAACAAACGACGGGTCAACCAGTGCATGGAAGCTGTGTCCGGTAACCCAAGTAGAAGAAACGAAGCTTATGATAAAATTGCTACCCATTTGGATTGCCATGTTGATGCCAAGCGCCATGACAGCCCAAGTAAACACACTGTTCGTAAAGCAAGGAACGAGACTGAACAGGCATTTGGGTTCTCACTTTGAAATTCCCCCAGGCTGCGTCACAGCATTCGTCACGATGTCAATGCTGGTATTCACTGTAATATATGACAGAGTACTAGTAGGGATTTTGAGAAGATTCACAGGCAATCCAAGAGGAATAACAATCCTACAGAGGATGGGTATTGGACTGGCCATCCACGTTCTAGTTATGGGAGTGGCCTCCATAACCGAAATCCAACGGATCAGAGTTGTGAAAGTACACAGGCTTCAAGGCAACCAAAAAGCAGTAACCCCTCTCACAATTTTTATCTTGCTTCCTCAGTTTTTGCTCATGGGCATAGCAGATTCCTTTGTTGAAGTCGGCAAACTAGAATTCTTTTATGATCAGGCCCCCGAGAGCATGCAGAGCATAGGAACTGCATTGTTCGCCAGTACTCTGGGAATTGGGAATTTTATCAGTAGTTTTCTTCTAACTGTTATGACTAACATCACAGGAAGAAAGGGCCACACCGAATGGATTTTGGACAATCTCAATGCATCTCGGCTTTACTACTATTATGCCTTGTTAGCAGTTCTTAACGTTTTAAATCTGATTTTCTTCCTCGCTGTCTCTCGGTCTTATGTTTACAAGAGAGAAACCAGTGAGGCATTCGTCGGTCACAGTAATGGCCATGTGGGTACAGTGACTGTGGAATCTTTTGCTCTGCCTGTGGTGACCAAAGACCATACGTATGAAAAGGAGCAACAGAGTATGGAGATAACGATGGTGAAGAGTCAAGGGAAATCGAGATAG___ATATGGCCGGTCAGTTTCAACTGTTGAATGTTAGAATAGATTTAGTGAAATAATTGGTAAGCCCCTCCAAGCCACGGCTATGAGGTGAACTCCTTTACCTTGTAAATATTGGGATATGGTATGTGTAATTGCGATATTGTTGGTAATTTTCATCTTTGCAT

Fln Alignment:

Contig6784___MGADQFDDFDIKEKHQKFSFFNWWMFSAFTGTLIGQTFLIYIQEHVGFSLGYGIPTVGLIISVVIFLIGTPFYRHKAQKGNPFGRMAQVIVAAARKWRISAPSDPIQLHELDYKEYVAKRRFPIHHTRILRFLDKAATNDGSTSAW--KLCPVTQVEETKLMIKLLPIWIAMLMPSAMTAQVNTLFVKQGTRLNRHLGSHFEIPPGCVTAFVTMSMLVFTVIYDRVLVGILRRFTGNPRGITILQRMGIGLAIHVLVMGVASITEIQRIRVVKVHRLQGNQKAVTPLTIFILLPQFLLMGIADSFVEVGKLEFFYDQAPESMQSIGTALFASTLGIGNFISSFLLTVMTNITGRKGHTEWILDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSYVYKRETSEAFVGHSNGHVGTVTVESFALPVVTKDHTYEKEQQSMEITMVKSQGK
B8LR41______________MGADQFDEFDPTEKHQKASFFNWWLFGAFIGTLFGQTFLIYIQENVGFSLGYGIPTAGLIISSVIFSIGTPFYRHKVRKGNPFGRMAQVIVAAARKWRVNMPSDPAKLHEVDPKQYVAQGRFPIHHTPSIRFLDKAATNDGSTSPWEWKLCSVTQVEETKLMIKMLPIWVAMFMPSAVIAQVNTLFIRQGTTLNRHMGSHFEIPAGSVTSFVTMSFLIFLVVYDRILVKTFRKFTGNRRGITILQRIGIGLAIHTLVMVVATITEIKRIRVVKAHGLEGNPKAVAPLTIFILLPQYFLMGIAEAFLEVGKLEFFYDQAPESMQSIGTALVGTTIGIGNFISSFLLTVTTKITGRKGHTNWVLNNLNASRLYYYYALLAVLNVLNFVFFLVVSRFYVYKRETNEAFGNDSHGHMGAVTVEPLALPLDSEAGAYENEQQSMETLMLTSQGK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
813	66		33		0.997452
969	87		12		0.992554
1047	42		57		1.0
1048		85		14	0.993533
1080	85			14	0.993533
1083		85	14		0.993533
1084	20	20			0.99255
1100	66	33			0.997452
1228	25	75			0.996473
1232	75		25		0.996473
1233			25	75	0.996473
1268		80	20		0.995493
1269	80		20		0.995493
1440	90		10		0.90298
1447	90		10		0.90298
1528		80		20	0.995493
1548	66	33			0.997452
1550			66	33	0.997452
1551			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain