SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6774

Length: 2110 nt

UniGene Fasta

>sp_v3.0_unigene6774
TACATGGGGATTCACATTGTGCCCATAAAGGCAAATCGTCTGTGCGGTCAAGGAATATGGTGTTGAAGAGCGGACTCGCGGCTTTTGCAGGATTGTTATATCTAGAGAAAACCCTTTGGTATCTCATCATCTGGATTTCTTAAATTCTATGGAGAGAATCATCGTCTGAGCAGCGTATATTATTCTTCATTGAGTATTGATGTTATAGATAAATACCCAATTTTGTTAAGTAATATTGAAAATTCTGAGAATTTGAGCCATGGCAGACCTAATGGAACATCCTAACAATGATTTGGAGAAGGGAGTAGATGAGAATGGTAATTTAAGGCAACCCTTGCTGCATCATGGTACTAAACACAGCAAAATAAGGAAACATAGGAACAGAGGCAAGAAAGATTCTGATGCACAGGGGAGTGCTGCAACTGCTGTTTTCTGTACCGCAATTGTGGCCTTGGGGCCTCTACAATTTGGGTTTTGTAATGGATATTCATCCCCAACACAGACTGAGATAATAAGCAGTCTAGGCCTGACTGTCTCTCAGTTCTCTTTATTTGGATCTTTATCCAATGTGGGTGCAATGGTGGGAGCGATTGTCAGTGGGAAAATTGCTGACTTCATAGGACGCAAAGGGGCATTAATTGTGGCTGCAATCCCAAATATTCTTGGATGGGTTGTGATCACTGTTGCACCGGATGCTTCGATTTTGTATTTGGGTAGATTGTTGACGGGTTTTGGAGTGGGAGTCATCTCATTCACTGTACCGGTATACATAGCTGAAATAGCTCCCAAGCGCTTGCGAGGAAGCCTTGGCACTGTCACACAGCTCTCTGTCACTATTGGTATTATGTTGGCATATTTATGTGGTCTATTCATTTCCTGGAGGCCTTTGGCAATTGTTGGTGTAATTCCTTGCACTTTCTTGTTGCTTGGACTCTTTTTCATCCCAGAATCTCCAAGATGGCTGGCCAAGATTGGAAATCAAGAATTTGAAGCTTCATTGCAAACTCTCCGTGGCCGTGATACTGATATTTCCCTTGAAATAGTTGAAGTCAAGAGTATGGTTGAGGCAAGCAATCGGCAAACTGGTATCAAATTCTCTGATCTAAGGAAAAGAAGATATGCACTCCCTCTGACTCTCGGTATCGGCCTGCTTCTCCTGCAGCAGTTGAGTGGAGTCAACGGTATTATGTTCTACAGCACTGCCATTTTTGAATCCGCTGGAATTTCATCTGGAAATGCTGCATCCCTTGGACTTGCCGGCATTCAGGTTATTATGACTGCAGTCTCTGCATGGCTAATGGACAAGGCTGGGAGACGTCTCCTGCTCCTGGTTTCATCTGGAGGGATGGGTATCTGCCTTTTTTTTGTTGCTCTTGCATTTTTCCTAAAGAGTCATGTTTCTGCAGATTCTCAGTTTGAAACCTTCTTTAGCGTTTTGGCCTTAACTAGTTTATTGGTTTACATCATCACGTTCTCTCTCGGTATGGGACCCATCCCATGGATTATTATGTCCGAGATTCTTCCAGCCAGCATGAAAGGTTTTGCTGGTAGCGTAGCAACTTTAGGAAATTGGTTGGCATCTTGGGCTGTGACAATGACGATTAATATTATGTTGGAGTGGAGTTCTACAGGGACATTTTTGATTTATTCTTTGCTATGCTTTTTTACATTCCTCTCTGTGGCCTTGTGGCTACCTGAAACTAAGGGGCGAACTTTAGAAGAAATTGAGGCCTCATTCAGATGAAGTTGACACGTCTAAGTACCTTGCATTTTATCGCTAGCATGATTCATTTCTACAAGAAGCAAGTAGTTTCAAGTGGATTATCAGTCTATATGATAAAGCTCTTTAGTTCGGAATATATGTGGCATCTGCCTTCTAACCAAAGGCACGGAGAGAGTAGCATAAAATTCATATCACGATAGCTTGTGGTAGAAAAAATATGGAACTCTTTGTATTATATCATCTGAATCTTATTTTGATTCATGTCCTCTTGTATGCAGTAGTGCATATTATGTTGTATCATGAAAGAGTGAGGGTAAGCACGGACTTCCCATAAATCAAAGAAAGCTCATTTTTGGTACTGTTGAAGATGTAAAAAAAGAAAAAAGA

Ace file of the UniGene sp_v3.0_unigene6774

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ERD6-like transporter (Fragment) n=2 Tax=Vitis vinifera RepID=D7SPD1_VITVI	-	-	0.0	56%
FL-Next	sp=Sugar transporter ERD6-like 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	Chromosome chr14 scaffold_164, whole genome shotgun sequence	-	-	8.158e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.257e-12	-

Source	Gene names
Sma3	10A19I.3; AT1G08900; At1g08900; At1g08920; At1g08930; At1g19450; At1g54730; At1g75220; At2g48020; At3g05150; At3g05155; At3g05160; At3g05400; At4g04750; At4g04760; At5g18840; At5g27350; At5g27360; ERD6; F17K4.90; F18O14.22; F21A20.60; F21A20.70; F22F7.16;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G75220.1	Major facilitator superfamily protein chr1:28229412-28232606 REVERSE LENGTH=487	58%
RefSeq	Arabidopsis thaliana	NP_177658.1	sugar transporter ERD6-like 6 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002301864.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FRL3

Fln msg:

Fln protein: MADLMEHPNNDLEKGVDENGNLRQPLLHHGTKHSKIRKHRNRGKKDSDAQGSAATAVFCTAIVALGPLQFGFCNGYSSPTQTEIISSLGLTVSQFSLFGSLSNVGAMVGAIVSGKIADFIGRKGALIVAAIPNILGWVVITVAPDASILYLGRLLTGFGVGVISFTVPVYIAEIAPKRLRGSLGTVTQLSVTIGIMLAYLCGLFISWRPLAIVGVIPCTFLLLGLFFIPESPRWLAKIGNQEFEASLQTLRGRDTDISLEIVEVKSMVEASNRQTGIKFSDLRKRRYALPLTLGIGLLLLQQLSGVNGIMFYSTAIFESAGISSGNAASLGLAGIQVIMTAVSAWLMDKAGRRLLLLVSSGGMGICLFFVALAFFLKSHVSADSQFETFFSVLALTSLLVYIITFSLGMGPIPWIIMSEILPASMKGFAGSVATLGNWLASWAVTMTINIMLEWSSTGTFLIYSLLCFFTFLSVALWLPETKGRTLEEIEASFR*

Protein Length: 496

Fln nts: TACATGGGGATTCACATTGTGCCCATAAAGGCAAATCGTCTGTGCGGTCAAGGAATATGGTGTTGAAGAGCGGACTCGCGGCTTTTGCAGGATTGTTATATCTAGAGAAAACCCTTTGGTATCTCATCATCTGGATTTCTTAAATTCTATGGAGAGAATCATCGTCTGAGCAGCGTATATTATTCTTCATTGAGTATTGATGTTATAGATAAATACCCAATTTTGTTAAGTAATATTGAAAATTCTGAGAATTTGAGCC_-_ATGGCAGACCTAATGGAACATCCTAACAATGATTTGGAGAAGGGAGTAGATGAGAATGGTAATTTAAGGCAACCCTTGCTGCATCATGGTACTAAACACAGCAAAATAAGGAAACATAGGAACAGAGGCAAGAAAGATTCTGATGCACAGGGGAGTGCTGCAACTGCTGTTTTCTGTACCGCAATTGTGGCCTTGGGGCCTCTACAATTTGGGTTTTGTAATGGATATTCATCCCCAACACAGACTGAGATAATAAGCAGTCTAGGCCTGACTGTCTCTCAGTTCTCTTTATTTGGATCTTTATCCAATGTGGGTGCAATGGTGGGAGCGATTGTCAGTGGGAAAATTGCTGACTTCATAGGACGCAAAGGGGCATTAATTGTGGCTGCAATCCCAAATATTCTTGGATGGGTTGTGATCACTGTTGCACCGGATGCTTCGATTTTGTATTTGGGTAGATTGTTGACGGGTTTTGGAGTGGGAGTCATCTCATTCACTGTACCGGTATACATAGCTGAAATAGCTCCCAAGCGCTTGCGAGGAAGCCTTGGCACTGTCACACAGCTCTCTGTCACTATTGGTATTATGTTGGCATATTTATGTGGTCTATTCATTTCCTGGAGGCCTTTGGCAATTGTTGGTGTAATTCCTTGCACTTTCTTGTTGCTTGGACTCTTTTTCATCCCAGAATCTCCAAGATGGCTGGCCAAGATTGGAAATCAAGAATTTGAAGCTTCATTGCAAACTCTCCGTGGCCGTGATACTGATATTTCCCTTGAAATAGTTGAAGTCAAGAGTATGGTTGAGGCAAGCAATCGGCAAACTGGTATCAAATTCTCTGATCTAAGGAAAAGAAGATATGCACTCCCTCTGACTCTCGGTATCGGCCTGCTTCTCCTGCAGCAGTTGAGTGGAGTCAACGGTATTATGTTCTACAGCACTGCCATTTTTGAATCCGCTGGAATTTCATCTGGAAATGCTGCATCCCTTGGACTTGCCGGCATTCAGGTTATTATGACTGCAGTCTCTGCATGGCTAATGGACAAGGCTGGGAGACGTCTCCTGCTCCTGGTTTCATCTGGAGGGATGGGTATCTGCCTTTTTTTTGTTGCTCTTGCATTTTTCCTAAAGAGTCATGTTTCTGCAGATTCTCAGTTTGAAACCTTCTTTAGCGTTTTGGCCTTAACTAGTTTATTGGTTTACATCATCACGTTCTCTCTCGGTATGGGACCCATCCCATGGATTATTATGTCCGAGATTCTTCCAGCCAGCATGAAAGGTTTTGCTGGTAGCGTAGCAACTTTAGGAAATTGGTTGGCATCTTGGGCTGTGACAATGACGATTAATATTATGTTGGAGTGGAGTTCTACAGGGACATTTTTGATTTATTCTTTGCTATGCTTTTTTACATTCCTCTCTGTGGCCTTGTGGCTACCTGAAACTAAGGGGCGAACTTTAGAAGAAATTGAGGCCTCATTCAGATGA___AGTTGACACGTCTAAGTACCTTGCATTTTATCGCTAGCATGATTCATTTCTACAAGAAGCAAGTAGTTTCAAGTGGATTATCAGTCTATATGATAAAGCTCTTTAGTTCGGAATATATGTGGCATCTGCCTTCTAACCAAAGGCACGGAGAGAGTAGCATAAAATTCATATCACGATAGCTTGTGGTAGAAAAAATATGGAACTCTTTGTATTATATCATCTGAATCTTATTTTGATTCATGTCCTCTTGTATGCAGTAGTGCATATTATGTTGTATCATGAAAGAGTGAGGGTAAGCACGGACTTCCCATAAATCAAAGAAAGCTCATTTTTGGTACTGTTGAAGATGTAAAAAAAGAAAAAAGA

Fln Alignment:

Contig6774___DENGNLRQPLLHHGTKHSKIRKHRNRGKKDSDAQGSAATAVFCTAIVALGPLQFGFCNGYSSPTQTEIISSLGLTVSQFSLFGSLSNVGAMVGAIVSGKIADFIGRKGALIVAAIPNILGWVVITVAPDASILYLGRLLTGFGVGVISFTVPVYIAEIAPKRLRGSLGTVTQLSVTIGIMLAYLCGLFISWRPLAIVGVIPCTFLLLGLFFIPESPRWLAKIG-NQEFEASLQTLRGRDTDISLEIVEVKSMVEASNRQTGIKFSDLRKRRYAXXXXXXXXXXXXXXXSGVNGIMFYSTAIFESAGISSGNAASLGLAGIQVIMTAVSAWLMDKAXXXXXXXXXXXXXXICLFFVALAFFLKSHVSADSQFETFFSVLALTSLLVYIITFSLGMGPIPWIIMSEILPASMKGFAGSVATLGNWLASWAVTMTINIMLEWSSTGTFLIYSLLCFFTFLSVALWLPETKGRTLEEIEASFR
Q9FRL3______________EARNDLRRPFIHTGSWYRMGSRQSSMMGSSQVIRDSSISVLACVLIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTLEELQSLFR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
421	88		11		0.923564
472	11		88		0.923564
474			11	88	0.923564
475			11	88	0.923564
476			11	88	0.923564
491		11		88	0.923564
492	11	88			0.923564
493		88		11	0.923564
494		88		11	0.923564
525	10		90		0.90298
602	87		12		0.992554
657	88			11	0.923564
729			87	12	0.992554
772	90			10	0.90298
843		14		85	0.993533
844	14			85	0.993533
845	85			14	0.993533
2044		75		25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain