SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6769

Length: 2229 nt

UniGene Fasta

>sp_v3.0_unigene6769
ATGGGGATTCAAATTTGTCATGATCATGTTTTGAGGTCCTTATCCAGTGGAATTTTATATGTTGAATCTGGGCCATGCATATACCACATCAGACGGTCATAAATATCCTACCTGATTGCCCACGATCCATAGCATACTGGTGGAATTCAGTTAATGCATGCACTGTAATTGTAGCTTGCCATTGGGGGGATCATGGCGGCTTACTCTGCAATCGGATCAACATTTTCAGCGATCCCTGCTCTTTTTGCTGAAAACCATCTTCAAAAACCGCTTAGAACAGCGGTTTTCCGAGGCAGAATCGTTCAGGAACCGAGTTCCAAGGTTTCTAGAAGACAGATTCCCAAGAGTTTTAATGTTTTGCATGGTGGGTTTGGAGTTTCAGAGGATCTCCTATCGGTTTTCTCAAGTGGGTTTTGTAGAGGGACAATTTCGAAGGCGAGAAGAGGGGCTACAGTAGTTGTCTATGCAGGGATAAACAACAGAAAACTTGAAGGGAGGAAGCTGAGAGTGGCTGTAATCGGAGGAGGCCCAGCAGGGGGATGTACAGCGGAAACGCTTGCCCAAGGAGGGATCGAAACATTTCTGATCGAGAGAAAGCTGGACAATGCAAAGCCCTGTGGGGGTGCAATACCCCTCTGCATGGTAGGTGAATTTGAGCTTCCTTCGGATATAATTGATAGAAAGGTCACTAAAATGAAAATGATTTCACCTTCTAATGTAGCGGTAGATGTTGGTAGAACCCTTAAAGAGAATGAGTATATTGGGATGGTTAGGAGAGAGGTCTTGGATGGCTACCTTAGGGAAAGGGCTGCTAATTTTGGTGCCAATGTGATCAATGGGCTTTTTATGAAAATGGATCTTCCAAAAGATAGTGATAGTCCTTATGTGCTGCATTATAACTTGTATGATGGGAAGTCTAACCAGGGTACACGGTGTAGTCTGGAGGTTGATGCAGTGGTGGGGGCAGATGGTGCAAATAGCAGAGTGGCAAAGGGCATTGATGCAGGGGACTATGATTATGCCATTGCGTTTCAGGAAAGGATTATGCTTCCTGTGGAGAAGATGGGTTACTATGAGAATTTGGCAGAAATGTATGTTGGGGATGATGTTTCTCCTGATTTTTATGGGTGGGTTTTCCCTAAGTGTGATCATGTGGCAGTGGGTACAGGGACTGTTATCAACAAGCCGGGAATAAAGCAATACCAGCTTGCCACCAGGAATCGGGCCAAGGAGAAGATTGAAGGGGGGAAGATTATAAGGGTGGAGGCGCATCCGATCCCCGAGCATCCAAGACCCCGGAGGGTGAAGGATAGAGTTGCTCTGGTTGGTGATGCTGCAGGCTATGTGACCAAGTGCTCTGGTGAGGGTATCTATTTTGCGGCGAAGTCTGGGAGGATGTGTGCAGAGGCCATTGTCGAAGGATCTGCAAATGGCACGAGGATGGTCAACGAGGCGGATTTGAGGAAGTACCTGGAGAAATGGGATAAGCAGTATTGGCCCACTTACAAAGTGTTGGATATTCTTCAGAAGGTGTTCTATAGATCCAATCCTGCCAGAGAAGCCTTTGTTGAGATGTGTGCTGATGATTACGTGCAGAAGATGACTTTTGACAGCTACTTGTACAAAACTGTTGTGCCTGGCAACCCTCTTGATGACCTGAAGCTTGCAATCAAAACAATTGGGAGTTTAGTGAGGGCTAGTGCCCTAAGAAAAGAGATGAAGAAGCTTTCTGTGTAGAAAACTGTGCTTGTTCTTCAGCTGTTACCAATTTAGCGTTTTAACTAGCCTTTGATCCTGTTATTTATTCAGTGCCTAGTTCATTTTCAAACTTTGAGATTTTGAAATTTTCTGTTTGATATTCTTCCTTGAATTATCAATATATCTATGTATTTATCTGCTGCGAAAGGTTTTAGCTGTTCTATACTCTTATGTAGCTGAACCTTTTGCCCTTTATCTTGTTCATAATGGGAACCTTTACTAAACAAGATTTAGAATTGCAGAAAATCTATGAGAAAGTTTAGAGAAACTGTTGTGCATGGCAGTCCTATTGATTATCTGAAGCTTGCAATCAAAACAATTGGGAGTTCAGTGAGGGCTAGTGGCCTAAGGAAAGAAAAGAGATGAACAAGTTGTCTGTGTAGAAAACGGTGCTTGTTTTTCAGCTGTTACCAATTTAGCGATTTAACAAGCTTTTGATCCTGTTATTTATTCAGTGCCTAGTTCATTTTC

Ace file of the UniGene sp_v3.0_unigene6769

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	geranylgeranyl hydrogenase [Glycine max]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Geranylgeranyl reductase, plant/prokaryotic	IPR010253	-	-
Sma3	Geranylgeranyl reductase, plant/cyanobacteria	IPR011774	-	-
Sma3	Geranylgeranyl reductase	IPR011777	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein chr1:27991248-27992845 FORWARD LENGTH=467	79%
RefSeq	Arabidopsis thaliana	NP_177587.1	geranylgeranyl diphosphate reductase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002317979.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ19

Fln msg:

Fln protein: MAAYSAIGSTFSAIPALFAENHLQKPLRTAVFRGRIVQEPSSKVSRRQIPKSFNVLHGGFGVSEDLLSVFSSGFCRGTISKARRGATVVVYAGINNRKLEGRKLRVAVIGGGPAGGCTAETLAQGGIETFLIERKLDNAKPCGGAIPLCMVGEFELPSDIIDRKVTKMKMISPSNVAVDVGRTLKENEYIGMVRREVLDGYLRERAANFGANVINGLFMKMDLPKDSDSPYVLHYNLYDGKSNQGTRCSLEVDAVVGADGANSRVAKGIDAGDYDYAIAFQERIMLPVEKMGYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVINKPGIKQYQLATRNRAKEKIEGGKIIRVEAHPIPEHPRPRRVKDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSANGTRMVNEADLRKYLEKWDKQYWPTYKVLDILQKVFYRSNPAREAFVEMCADDYVQKMTFDSYLYKTVVPGNPLDDLKLAIKTIGSLVRASALRKEMKKLSV*

Protein Length: 516

Fln nts: ATGGGGATTCAAATTTGTCATGATCATGTTTTGAGGTCCTTATCCAGTGGAATTTTATATGTTGAATCTGGGCCATGCATATACCACATCAGACGGTCATAAATATCCTACCTGATTGCCCACGATCCATAGCATACTGGTGGAATTCAGTTAATGCATGCACTGTAATTGTAGCTTGCCATTGGGGGGATC_-_ATGGCGGCTTACTCTGCAATCGGATCAACATTTTCAGCGATCCCTGCTCTTTTTGCTGAAAACCATCTTCAAAAACCGCTTAGAACAGCGGTTTTCCGAGGCAGAATCGTTCAGGAACCGAGTTCCAAGGTTTCTAGAAGACAGATTCCCAAGAGTTTTAATGTTTTGCATGGTGGGTTTGGAGTTTCAGAGGATCTCCTATCGGTTTTCTCAAGTGGGTTTTGTAGAGGGACAATTTCGAAGGCGAGAAGAGGGGCTACAGTAGTTGTCTATGCAGGGATAAACAACAGAAAACTTGAAGGGAGGAAGCTGAGAGTGGCTGTAATCGGAGGAGGCCCAGCAGGGGGATGTACAGCGGAAACGCTTGCCCAAGGAGGGATCGAAACATTTCTGATCGAGAGAAAGCTGGACAATGCAAAGCCCTGTGGGGGTGCAATACCCCTCTGCATGGTAGGTGAATTTGAGCTTCCTTCGGATATAATTGATAGAAAGGTCACTAAAATGAAAATGATTTCACCTTCTAATGTAGCGGTAGATGTTGGTAGAACCCTTAAAGAGAATGAGTATATTGGGATGGTTAGGAGAGAGGTCTTGGATGGCTACCTTAGGGAAAGGGCTGCTAATTTTGGTGCCAATGTGATCAATGGGCTTTTTATGAAAATGGATCTTCCAAAAGATAGTGATAGTCCTTATGTGCTGCATTATAACTTGTATGATGGGAAGTCTAACCAGGGTACACGGTGTAGTCTGGAGGTTGATGCAGTGGTGGGGGCAGATGGTGCAAATAGCAGAGTGGCAAAGGGCATTGATGCAGGGGACTATGATTATGCCATTGCGTTTCAGGAAAGGATTATGCTTCCTGTGGAGAAGATGGGTTACTATGAGAATTTGGCAGAAATGTATGTTGGGGATGATGTTTCTCCTGATTTTTATGGGTGGGTTTTCCCTAAGTGTGATCATGTGGCAGTGGGTACAGGGACTGTTATCAACAAGCCGGGAATAAAGCAATACCAGCTTGCCACCAGGAATCGGGCCAAGGAGAAGATTGAAGGGGGGAAGATTATAAGGGTGGAGGCGCATCCGATCCCCGAGCATCCAAGACCCCGGAGGGTGAAGGATAGAGTTGCTCTGGTTGGTGATGCTGCAGGCTATGTGACCAAGTGCTCTGGTGAGGGTATCTATTTTGCGGCGAAGTCTGGGAGGATGTGTGCAGAGGCCATTGTCGAAGGATCTGCAAATGGCACGAGGATGGTCAACGAGGCGGATTTGAGGAAGTACCTGGAGAAATGGGATAAGCAGTATTGGCCCACTTACAAAGTGTTGGATATTCTTCAGAAGGTGTTCTATAGATCCAATCCTGCCAGAGAAGCCTTTGTTGAGATGTGTGCTGATGATTACGTGCAGAAGATGACTTTTGACAGCTACTTGTACAAAACTGTTGTGCCTGGCAACCCTCTTGATGACCTGAAGCTTGCAATCAAAACAATTGGGAGTTTAGTGAGGGCTAGTGCCCTAAGAAAAGAGATGAAGAAGCTTTCTGTGTAG___AAAACTGTGCTTGTTCTTCAGCTGTTACCAATTTAGCGTTTTAACTAGCCTTTGATCCTGTTATTTATTCAGTGCCTAGTTCATTTTCAAACTTTGAGATTTTGAAATTTTCTGTTTGATATTCTTCCTTGAATTATCAATATATCTATGTATTTATCTGCTGCGAAAGGTTTTAGCTGTTCTATACTCTTATGTAGCTGAACCTTTTGCCCTTTATCTTGTTCATAATGGGAACCTTTACTAAACAAGATTTAGAATTGCAGAAAATCTATGAGAAAGTTTAGAGAAACTGTTGTGCATGGCAGTCCTATTGATTATCTGAAGCTTGCAATCAAAACAATTGGGAGTTCAGTGAGGGCTAGTGGCCTAAGGAAAGAAAAGAGATGAACAAGTTGTCTGTGTAGAAAACGGTGCTTGTTTTTCAGCTGTTACCAATTTAGCGATTTAACAAGCTTTTGATCCTGTTATTTATTCAGTGCCTAGTTCATTTTC

Fln Alignment:

Contig6769___MAAYSAIGSTFSAIPALFAENHLQKPLRTAVFRGRIVQEPSSKVSRRQIPKSFNVLHGGFGVSEDLLSVFSSGFCRGTISKARRGATVVVYAGINNRKLEGRKLRVAVIGGGPAGGCTAETLAQGGIETFLIERKLDNAKPCGGAIPLCMVGEFELPSDIIDRKVTKMKMISPSNVAVDVGRTLKENEYIGMVRREVLDGYLRERAANFGANVINGLFMKMDLPKDSDSPYVLHYNLYDGKSNQGTRCSLEVDAVVGADGANSRVAKGIDAGDYDYAIAFQERIMLPVEKMGYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVINKPGIKQYQLATRNRAKEKIEGGKIIRVEAHPIPEHPRPRRVKDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSANGTRMVNEADLRKYLEKWDKQYWPTYKVLDILQKVFYRSNPAREAFVEMCADDYVQKMTFDSYLYKTVVPGNPLDDLKLAIKTIGSLVRASALRKEM
B8LQ19______________MAAYSAIGAPFSAIPALSAESHFQKPLRTAVFRGRIVQVPSSEVSRRQIPKNFNGLRGGFGVSEDLQSVFSSGFCRGTNLKAKRGATIVVYAGINNRKLEGRKLRVAVIGGGPAGGCTAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFELPLDIIDRKVTKMKMISPSNVAVDVGRTLKENEYIGMVRREVLDSYLRERAAKFGANVINGLFMKMDLPKDSDSPYVLHYNLYDGASSQGTRCTLEVDAVVGADGANSRVAKGIDAGDYDYAIAFQERIMLPVEKMGYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVINKPGIKQYQLATRNRAKEKIEGGKIIRVEAHPIPEHPRPRRVKDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSANGTRMINEADLRRYLEKWDKQYWPTYKVLDILQKVFYRSNPAREAFVEMCADDYVQKMTFDSYLYKTVVPGNPLDDLKLAIKTIGSLVRASALRKEM

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
160		80	20		0.995493
696	87		12		0.992554
728			16	83	0.994512
766	11		88		0.923564
767		11	88		0.923564
768	11		88		0.923564
769	88			11	0.923564
881	12		87		0.992554
1006	10		90		0.90298
1042	88		11		0.923564
1102			90	10	0.90298
1247	11		88		0.923564
1248			88	11	0.923564
1861	85		14		0.993533
1900	20		80		0.995493
1933	73			26	1.0
1943	73		26		1.0
1945	20	80			1.0
1954			20	80	1.0
1987	11	88			0.923564
2005	85			14	0.993533
2052	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain