SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6764

Length: 1766 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6764

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine proteinase-like protein [Arabidopsis thaliana] gb\|AAF14829.1\|AC011664_11 unknown protein [Arabidopsis thaliana] gb\|AAS76700.1\| At3g02070 [Arabidopsis thaliana] gb\|AAS92324.1\| At3g02070 [Arabidopsis thaliana] dbj\|BAH20151.1\| AT3G02070 [Arabidopsis	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Cysteine-type peptidase, putative	-	-	3.802e-15	-

Source	Gene names
Sma3	AT3G02070; At3g02070; At3g22260; At5g03330; At5g04250; CHLREDRAFT_205632; F12E4_60; F1C9.14; F21E1_170; GSVIVT00018158001; GSVIVT00023222001; GSVIVT00024580001; GSVIVT00033317001; GSVIVT00037995001; LOC_Os03g39230; LOC_Os03g64219; MICPUN_54840; OJ1202_E07

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ovarian tumour, otubain	IPR003323	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02070.1	Cysteine proteinases superfamily protein chr3:361368-363132 FORWARD LENGTH=219	72%
RefSeq	Arabidopsis thaliana	NP_186856.1	cysteine proteinase-like protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002320400.1	predicted protein, partial [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8J8

Fln msg:

Fln protein: MEKNPENLRQNSSSSSMSSQHDVGDDRMIAEVLSEEYANSNAAVGRRLQHLNSMPLVPRINGAIPSADDASFDHQRLLDRLTTYGLSELKVSGDGNCQFRALSDQLYNSPEYHKHVRKEVVKQLKKFRSAYEAHVPMKYKHYYRKMRKAGEWGDHVTLQAAADRFSAKICLLTSFRDTCFIEIMPRQQSPQRELWLSFWSEVHYNSLYDVGEVPYRAKQKKKHWLF*

Protein Length: 228

Fln nts: CGTCGTGACCTTGGCTGTCACTCCTCGTCTCTGCACGGACCTTCCCTATTTCGCTCATGCGTATTGGTAATGACAAGCTTCTTCATTTCATATAAATTCAATCGAAAACTTGACACCTTGGCTGTAAATTCATGGTGCAGAAGGCAGACCTATGGAATTATTTACTCTTTGTTGAATGAAGAGATGGTTTGGAAAACTTCCAGGAGCTGAATATTGGAACTTACGACAATCTCATTTATTTCTTGGGTGTCTCCTGATCCTTAATTCTAGTCTAAGGAGCGTGAACAAAGTTCCAAGGCAGTATTGGCTTGTATACCAAATTTCCATATAATATCATTTCTGTCATTATGAAATTATACAAACAATTTAGTGGGTCACTTATGTAGGGGAATGCTCTGGTGTCACCTTTGATTGGTCCAGAGGAGAGGAAAATATTTTGTCACCATTAATCGGAGATTATCTACTGGTTTATTGTCATAGAGACATAAGCGACTTCTTTGGTACCTTATTTTCTTGGCCCACATAAGGAGACATTTTTCTGTCATAAATTGGGGAAT_-_ATGGAGAAAAATCCAGAGAATCTTCGACAAAACTCTAGCTCAAGTTCCATGAGCAGTCAACATGATGTTGGAGATGACAGGATGATAGCCGAAGTGCTATCTGAAGAATACGCAAATTCAAATGCTGCTGTTGGTAGGCGCCTACAACATCTAAATTCAATGCCGCTTGTTCCTCGGATCAATGGAGCTATACCTAGTGCAGATGATGCAAGTTTCGATCACCAACGACTGCTAGATAGATTAACTACTTATGGGCTAAGTGAATTGAAGGTCTCCGGGGATGGCAATTGCCAGTTTCGTGCCTTGTCAGATCAGCTTTATAACTCTCCAGAGTATCACAAGCATGTTAGAAAGGAGGTAGTTAAGCAGCTTAAAAAGTTTCGATCTGCATATGAAGCCCATGTTCCCATGAAATACAAGCATTATTACAGGAAGATGAGGAAGGCTGGAGAATGGGGAGATCATGTTACTCTCCAGGCTGCTGCTGATCGGTTCAGCGCTAAAATATGTTTGCTTACATCATTCAGGGACACTTGCTTTATTGAGATCATGCCAAGACAGCAGAGTCCACAGAGAGAACTTTGGCTGAGCTTCTGGTCCGAAGTACACTACAATTCGCTGTATGATGTTGGAGAAGTTCCATACAGAGCAAAGCAGAAGAAGAAACACTGGCTGTTTTAG___AGAAAACCTAGAGGTTCTCTTCTCAAGTTATAATGGATGAGACCCAACATACACTGGGAAAGCATTCTTCTAAATATGAGATCACAGGTATCGACAATTACATGGTTGACTTGTACTAACCAGATTTGTGAAAATGGCGCTGCCATTACTGCAGTTATTCTTTTGTGAGACAGAGGCCTTTTCTCTACTGCCATTACTTAATTCTTTTTTTGAATTGGAGGCCTTTGCTGTATATAATTTTATTGCTTCACTACTGCATCATCATCATTAAACTTTTGTGTAAATATTACTTGATTGATGAGAAAATTCACAAGGCTTCCAACATTCTACTTGTTCATTAAATTTACATGGAGCTTTCTTCTCTAATTTCCCATATTCCCAGATAAAGAAACTATGCCTGCTATCAGACGATTAAATATTGATACAAATGGGTTATGCCGTTTGTTAAAAATGTCTTTATTTTCATGTTGAGGACTGTTCCTACTCAAGTCCACTCTCTATCGGTAACTTGTGATAACGTTAATGTCA

Fln Alignment:

Contig6764___MEKNPENLRQNXXXXXXXXQHDVGDDRMIAEVLSEEYANSNAAVGRRLQHLNSMPLVPRINGAIPSADDASFDHQRLLDRLTTYGLSELKVSGDGNCQFRALSDQLYNSPEYHKHVRKEVVKQLKKFRSAYEAHVPXXXXXXXXXXXXAGEWGDHVTLQAAADRFSAKICLLTSFRDTCFIEIMPRQQSPQRELWLSFWSEVHYNSLYDVGEVPYRAKQKKKHWLF
D5A8J8______________MKKEQDNIGESSSSRVLDSQQDIEDDRMIATILSEEYASLDRSVGRRLSHLQSIPHTPRINVYIPSANEATLDHQRLHDRLTIYGLCELKIQGDGNCQFRALSDQLYHSPEYHKYVRKEVVKQLKSFQSAYEGYVPMRYKDYLKKMKKSGEWGDHVTLQSAADRFGAKICLVTSFRDTCFIEIVPKQLNQRKELWLSFWSEVHYNSLYEIGEVPIRV-QKKKHWLF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
455			85	14	0.993533
499			14	85	0.993533
624			20	80	0.995493
645	83		16		0.994512
670	16		83		0.994512
671		83		16	0.994512
672	83			16	0.994512
793		25	75		0.996473
796	75			25	0.996473
873	33		66		1.0
882		33		66	0.997452
981	33			66	1.0
1089		50		50	1.0
1176			33	66	0.997452
1178		33		66	0.997452
1265	75			25	0.996473
1267			25	75	0.996473
1268			25	75	0.996473
1503		33	66		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1495	1506	CAT CAT CAT CAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain