SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6744

Length: 1438 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6744 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gibberellic acid methyltransferase 2 [Arabidopsis thaliana] gb\|AAU84675.1\| At5g56300 [Arabidopsis thaliana] gb\|AAV43779.1\| At5g56300 [Arabidopsis thaliana] gb\|AED96746.1\| gibberellic acid methyltransferase 2 [Arabidopsis thaliana]	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%

Source	Gene names
Sma3	GSVIVT00024863001; RCOM_0546890; VITISV_041198;

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVY6

Fln msg: Overlapping hits, possible frame ERROR between 1184 and 1160,

Fln protein: MDNWGIEKQHHSSEILGMASEALGKAMDNGTLHKARGNNLEGVLHMYAGDGDASYAENSDRQRQVFRMLQPLFEAAIEKLRFPREGPLRITDLGCATGTNTVADVDFVVKTLINLCENGHHSNGRSSMLEFQAYFSDLPSNDFNGLFNLLDRPGHSPYFVAGVPGSFYNVLFPRSTIHVCFSVMALHWLSEVPQAVVMKDSPLYNKERVWINGGRQDVAEAYSKQSEKDLNTFFNCRAQEMAPGGVLFLCMMGRPDSWSPAQQVSVGGEFCGQDFENAWDELVTQGIIGRDLRDSFNLPWYFPNADEMRQAVEKCGDFEIENLQVCEWVPSMSEEDFEKYIKDPKMFGCMKSNLVKSFVGSLVEAHIGKECTExxxxxxxxxxAALLQRNPPSRLVTCTVTSLIRK*

Protein Length: 408

Fln nts: ATGGGGGACAGGCACATTGGTATCACTCAAACTTATCA_-_ATGGACAATTGGGGCATTGAAAAGCAGCACCATTCAAGTGAAATCCTCGGAATGGCAAGTGAAGCCCTCGGAAAGGCCATGGACAACGGCACGCTTCACAAAGCCAGAGGCAATAATCTCGAAGGAGTTCTTCACATGTACGCGGGCGATGGCGATGCAAGTTACGCCGAGAACTCTGACAGACAGCGGCAGGTTTTCCGGATGTTGCAGCCGCTGTTTGAAGCGGCCATCGAGAAGCTCAGATTTCCCCGAGAGGGCCCTCTCAGAATCACAGATCTGGGCTGTGCAACTGGTACTAACACCGTAGCAGACGTCGATTTCGTTGTCAAAACGCTTATAAATCTTTGTGAGAATGGCCATCATTCTAATGGCAGGAGCTCAATGCTGGAGTTCCAGGCTTATTTCTCTGATCTGCCTTCCAATGACTTCAATGGGCTCTTCAATCTGTTGGACCGACCTGGGCATTCTCCATATTTTGTTGCGGGTGTCCCTGGATCCTTTTACAACGTTCTGTTTCCGAGATCCACCATTCATGTCTGCTTCTCTGTCATGGCGCTTCATTGGCTTTCAGAGGTGCCTCAGGCTGTTGTGATGAAGGATTCGCCCTTATATAATAAGGAAAGAGTGTGGATTAATGGAGGCAGGCAGGATGTTGCAGAAGCTTATTCAAAGCAATCTGAAAAGGACCTCAACACTTTTTTCAACTGCAGAGCTCAGGAGATGGCACCCGGAGGCGTGCTCTTCTTGTGTATGATGGGTAGACCAGACAGTTGGTCTCCTGCACAACAAGTTTCTGTGGGAGGCGAATTCTGTGGCCAGGACTTTGAAAATGCATGGGATGAATTGGTGACACAGGGGATTATTGGCAGAGATTTGAGGGACTCTTTCAATCTTCCCTGGTATTTTCCTAATGCAGATGAGATGAGACAGGCAGTGGAGAAATGTGGCGATTTTGAGATTGAGAACCTGCAAGTGTGCGAGTGGGTGCCGAGCATGAGTGAGGAGGATTTTGAAAAATATATTAAGGACCCAAAGATGTTTGGGTGTATGAAATCCAATCTCGTGAAAAGCTTTGTGGGTAGTTTGGTTGAAGCCCACATTGGCAAGGAATGCACAGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGCTTCTGCAGCGCAATCCACCTTCTAGACTGGTCACCTGCACGGTCACTTCGCTCATAAGAAAGTAG___TCGACAGCGTCTTCAGAATCAATTCAATTTTTATATGAAAATAGAATAAATTCGTGTTGGAGGTATTTCTTTTGATCAGGGTGTTTGTGTGGAGTTGTAATACTATTTAGTCGTGTTATCATTCGAAGGACATGTCGGACATCTTTATAAGAAGGGACATCATTATAAGAAGTCAATATA

Fln Alignment:

Contig6744___MDNWGIEKQHHSSEILGMASEALGKAMDNGTLHKARGNNLEGVLHMYAGDGDASYAENSDRQRQVFRMLQPLFEAAIEKLRFPREGPLRITDLGCATGTNTVADVDFVVKTLINLCENGHHSNGRSSMLEFQAYFSDLPSNDFNGLFNLLDRPGHSPYFVAGVPGSFYNVLFPRSTIHVCFSVMALHWLSEVPQAVVMKDSPLYNKERVWINGGRQDVAEAYSKQSEKDLNTFFNCRAQEMAPGGVLFLCMMGRPDSWSPAQQVSVGGEFCGQDFENAWDELVTQGIIGRDLRDSFNLPWYFPNADEMRQAVEKCGDFEIENLQVCEWVPSMSEEDFEKYIKDPKMFGCMKSNLVKSFVGSLVEAHIGKECTEIxxxxxxxxAAALLQRNPPSRLVTCTVTSLIRK
A9NVY6______________MENDGMENNPSSRNVLRKDNSSLDYGKDSGI-------NLHGVLHVYSGNSVASYAENSERQRHVFHALQSLFQAAIEKLRFPQEGPLRIADLGCATGINTVSDVDFVVKTLRNLWRDGH-SNGGGSVAEFQAYFSDLPSNDFNGLFNLLDRPA-SPYFVAGVPGSFYNVLFPTSSIHVCFSVMALHWLSQVPQAIVQKTSPLYNKGRVWINRGSQDIAEAYSKQSESDLNAFINCRAQEMAPGGVIFLCMMGRPDSWLPTEQVSVGGEFCGQDFEDAWDELVTQGIISSDLRDSFNLPWYFPTAKELRRAVENCGVFEIESMQVFEQVPSMPEEEFEEYIRDPKMFGLMKSNLVKSFVGSLIEAHIGKKCTDQxxxxxxxxAAALLHCSPPSRLVTCTVSSLIRK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
729		11	88		0.923564
754	11	88			0.923564
784		66	33		1.0
846		11	88		0.923564
859		22	77		0.999999
861	77			22	0.999999
862			77	22	0.999999
902	85	14			0.993533
904			85	14	0.993533
905			85	14	0.993533
1084	75		25		0.996473
1177		50	50		1.0
1234	10		90		0.90298
1235	10		90		0.90298
1236		90		10	0.90298
1398		80		20	0.995493
1427		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain