SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6742

Length: 1438 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6742

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone-flavanone isomerase family protein [Arabidopsis thaliana] emb\|CAB86418.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAL38325.1\| unknown protein [Arabidopsis thaliana] gb\|AAM10188.1\| unknown protein [Arabidopsis thaliana] gb\|AAM65770.1\| unkno	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	chalcone isomerase activity	GO:0045430	Molecular Function	0.0	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chalcone isomerase, subgroup	IPR003466	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G63170.1	Chalcone-flavanone isomerase family protein chr3:23334675-23335993 FORWARD LENGTH=279	46%
RefSeq	Arabidopsis thaliana	NP_567140.1	Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002300842.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXH6

Fln msg:

Fln protein: MASSLPLPLNPNSPPFPPHSSTPTSSTSSSSIRCLAAALSVGIGVGLAVAPQLANQRSWVVQSLRDVCAQKRRAPYYFWGPLACLSLATEVAHAEKTKTIVESITGVSFPSVSYETKQLAGVGVRKKSILGLKSINVYAFGVYVDENSLKEKLVDKYGKMSVTELKDNKEFYEDVIGNDLSLTVRLEIVYGKLSIGSVRSAFEESIGSRLQKFSGSQNKELLQRFTSQFKDDQKLPRGTKIHITRFPGHVLQTKIDEKEVGSIQSQLLCRSLFDLYIGEDPLDKQAKEKIGVGLGSLLS*

Protein Length: 301

Fln nts: TCTCTGTACGCCTGCCATCAACTGTCTTGGTAAATGTTATCTACCAAATGCGGTCGAAATTTACTAACTTCAATTGTTTATATCAATACCACTACAGCCTGAGCTGGAAGCCCATGTGGGCATCCATCGCCTTGGTTTTAGAAATTGCAGAAAGGGTCTCTTCCACTTATTTCCCATTCCATTGCAAATGTCATGTTTTCTAGTGCCTGTAAGCAAAAGAGGGAAACTTCGATTTCAACAACCTTCAGGGCTGCGCTCTCTGTTCCCTCTGGAAACGAAAATCTAGCAATTGTTTAAAAATAAAACAGTTTAAACAGACTCAGTCTCATTAATCTCCTCCGAGTTTCACTCCTGAATTTCATCTGAGAAGTGGTTGTTATTGATTCACACTTCCTACCTACCCACGAATTGATATAGCGATATAATTCATTTGAGGGTTATAAGTTTACTAGATTTTGCAGTGATATCCTTTTGCTATCTGACTGCA_-_ATGGCATCATCCTTACCTCTGCCATTAAACCCAAACTCTCCTCCATTCCCACCGCATTCTTCCACACCCACTTCATCAACATCCTCATCATCTATTAGGTGTTTAGCAGCGGCATTGAGCGTGGGAATTGGAGTTGGTCTGGCCGTGGCTCCCCAACTTGCCAATCAGAGAAGTTGGGTGGTCCAAAGTCTACGTGACGTTTGCGCTCAGAAAAGAAGGGCACCCTACTATTTTTGGGGTCCTCTAGCCTGTTTGTCATTGGCCACGGAGGTTGCTCACGCGGAGAAAACTAAAACGATCGTGGAATCCATCACTGGGGTCTCTTTCCCATCTGTGTCCTATGAAACCAAGCAGCTTGCTGGAGTTGGAGTGAGGAAGAAGAGCATACTGGGCCTCAAAAGCATCAATGTATATGCATTTGGCGTATATGTAGACGAGAACAGTCTCAAGGAAAAACTTGTTGACAAATATGGGAAGATGTCAGTAACAGAGCTGAAAGATAATAAAGAATTTTATGAAGATGTGATTGGAAATGATTTGAGTTTGACAGTGAGGCTTGAGATCGTGTATGGGAAATTAAGTATCGGTTCAGTGCGTAGTGCCTTTGAAGAATCAATTGGAAGTCGACTACAGAAATTCAGTGGAAGCCAGAACAAGGAATTATTGCAAAGATTCACATCTCAGTTTAAGGATGATCAGAAGCTACCACGTGGCACAAAAATACACATTACCAGATTCCCTGGTCACGTTCTCCAGACAAAAATTGATGAAAAGGAGGTTGGCAGCATTCAGAGCCAGCTGTTGTGTCGTTCTTTGTTCGACCTATATATTGGAGAAGATCCATTGGACAAGCAAGCAAAAGAAAAAATTGGAGTGGGCTTGGGATCTCTTCTGAGCTAG___TAGATACAGGCATAGTGCTTTTGTTTTATAATAATCAATAATTGAGAAATG

Fln Alignment:

Contig6742___IRCLAAALSVGIGVGLAVAPQLANQRSWVVQSLRDVCAQKRRAPYYFWGPLACLSLATEVAHAEKTKTIVESITGVSFPSVSYETKQLAGVGVRKKSILGLKSINVYAFGVYVDENSLKEKLVDKYGKMSVTELKDNKEFYEDVIGNDLSLTVRLEIVYGKLSIGSVRSAFEESIGSRLQKFSGSQNKELLQRFTSQFKDDQKLPRGTKIHITRFPGHVLQTKIDEKEVGSIQSQLLCRSLFDLYIGEDPLDKQAKEKIGV
A9NXH6______________IRCLAVTLGVGIGVGLAVAPHLAKQRNWVAQSLRDVCAQRKRAPSYFWGPLACLSLATEVSQMEKTKTTVEPNTGVSFPSVFYETKQLAGVGVRKKSILGLKNINVYAFGVYVDENSLKEKLVDKYGKMSVTELKDSKEFYEDVIGNDLSLTVRLEIVYGKLSIGSVRSAFEESIGSRLQKFSGSQNKELLQRFTSQFKDDHKLPRGTKIHITRFPGHILQTKIDEKEVGSIQSQLLCRSLFDLYIGEDPLDKQAKEKIGV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
818	83		16		0.994512
1130	11			88	0.999937
1307		85		15	1.0
1370	20		80		0.995493
1373	20	20	40		0.994159
1383		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain