SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6733

Length: 1406 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6733

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine carboxypeptidase-like enzyme n=2 Tax=Selaginella moellendorffii RepID=D8QR91_SELML	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Serine carboxypeptidase, putative	-	-	4.629e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	6.773e-32	-
Sma3	Carboxypeptidase D.	EC:3.4.16.6	-	0.0	-

Source	Gene names
Sma3	AP7_B10.1; AT4G30810; At1g28110; At1g43780; At2g12480; At2g24000; At2g24010; At2g33530; At2g35780; At3g02110; At3g07990; At3g63470; At4g30610; At4g30810; At5g42230; At5g42240; BRS1; CBP2; CHLREDRAFT_119383; CXP; ECS1; F13K9.20; F17A17.33; F17I23.50; F1C9.

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Lysosome-associated membrane glycoprotein, conserved site	IPR018134	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42240.1	scpl42 serine carboxypeptidase-like 42 chr5:16888717-16890931 FORWARD LENGTH=473	51%
RefSeq	Arabidopsis thaliana	NP_199039.1	serine carboxypeptidase-like 42 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002300939.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX75

Fln msg: your sequence is shorter than subject: 371 - 469

Fln protein: RMGLKRNPHSWNKVANLLFLDSPAGVGWSYSNGTSPYNYNDERVANETLTFLLKWYEKFPEYKTRDLVITGESYAGHYIPQLAEKILRHNTNPGGYKFNLRAITIGNPLLNYGVDTTATYFFLWSHGLISDKTYKGVTSACDFNNGVDDGNGDDEAQVGSCQFFVGTARDEVGGNINMYDVTLDICPPPIARQALLLRKLMTHRVDGIDVCIDDEITSYFNQRQVQEALHANITRLPYSWEACSGVVDYKFDDQLQNMLPILSNLLKQGLRVWIFSGDQDSVVPLTGTRSQMSKLAKDSNLRPIMPYSAWYAHGQVGGWTEAYEQLVYATVRGAAHMVPYAQPERALILFRRFLSGKPLPRRLPSVSHHL*

Protein Length: 372

Fln nts: CCGAATGGGGTTGAAGAGAAATCCGCATTCCTGGAATAAAGTGGCAAATCTTCTTTTCCTGGATTCTCCGGCTGGAGTGGGGTGGTCTTATTCGAATGGCACATCACCCTACAATTACAACGACGAAAGAGTGGCGAATGAGACCTTGACATTTCTACTCAAATGGTACGAAAAGTTTCCAGAGTACAAGACCCGGGACCTGGTCATCACTGGAGAAAGCTACGCAGGGCATTATATACCGCAACTAGCAGAAAAAATTCTGAGGCACAACACGAATCCCGGTGGATATAAATTCAATCTCAGAGCCATCACGATTGGCAATCCTCTACTGAATTATGGCGTCGATACGACCGCGACCTATTTTTTCCTGTGGTCGCATGGCCTTATTTCCGACAAAACCTACAAGGGCGTTACGTCGGCCTGCGACTTTAACAACGGTGTAGACGACGGCAACGGCGACGATGAGGCACAGGTGGGCAGCTGCCAGTTTTTCGTCGGCACAGCGCGCGACGAGGTCGGTGGTAACATCAACATGTACGACGTTACGCTGGATATCTGCCCCCCTCCCATTGCGCGACAGGCCTTGCTCCTGCGTAAGTTGATGACGCATAGGGTGGACGGGATCGACGTGTGTATCGACGATGAGATAACGTCCTATTTTAACCAGCGCCAAGTTCAAGAAGCTCTCCATGCAAACATTACACGCCTTCCATACTCGTGGGAAGCTTGCAGTGGGGTTGTTGATTACAAATTCGACGATCAATTGCAAAACATGCTTCCCATACTTTCCAACCTTTTGAAGCAGGGTTTACGTGTCTGGATCTTCAGTGGAGATCAAGATTCAGTGGTGCCATTAACCGGAACCAGAAGTCAGATGAGCAAGCTTGCTAAAGATTCGAACCTCCGACCTATAATGCCGTATAGTGCTTGGTATGCTCATGGACAGGTGGGTGGATGGACTGAAGCATATGAACAGCTTGTTTATGCGACAGTGAGAGGTGCAGCGCACATGGTTCCCTATGCTCAGCCTGAAAGGGCATTGATTTTGTTTCGGAGGTTCTTATCTGGCAAGCCTTTACCTCGACGCTTACCTTCTGTAAGCCATCATTTATAG___CATAACGAGTCTCTAAAATCTACTCGAGCACATGGAGCAAATCTGTAAAACATTAAGAACATATTCAGAAATAAGTATATATATATGATATGTGTTCGGTTCTTAATTGTATAAAAACAATTTAACTCTGGCTTTGACTCTAGAGTCTAAACAATTGCCTTCAGCATGATTGGTGAACAAATAACTAATGAAATGTTATTCAAAAGAGTAACGATAAATTACTGCCATGTTGAGTGAATCCATCTTTCATTTAAGTCTGGAGACAATGTTATATATCTAAGACTTTGGCATG

Fln Alignment:

Contig6733___GLKRNPHSWNKVANLLFLDSPAGVGWSYSNGTSPYNYNDERVANETLTFLLKWYEKFPEYKTRDLVITGESYAGHYIPQLAEKILRHNTNPGGYKFNLRAITIGNPLLNYGVDTTATYFFLWSHGLISDKTYKGVTSACXXXXXXXXXXXXXEAQVGSCQFFVGTARDEVGGNINMYDVTLDICPPPIARQALLLRKLMTHRVDGIDVCIDDEITSYFNQRQVQEALHANITRLPYSWEACSGVVDYKFDDQLQNMLPILSNLLKQGLRVWIFSGDQDSVVPLTGTRSQMSKLAKDSNLRPIMPYSAWYAHGQVGGWTEAY-EQLVYATVRGAAHMVPYAQPERALILFRRFLSGKPLP
A9NX75______________GLRKNLQSWNKVSNLLFVESPAGVGWSYSNTTSDYTCGDESTARNMLVFLSKWFKRFPEYASRDLFLTGESYAGHYIPQLANKLLNYNKVAKRYKFNLKGISIGNPLLSLNVDTAASYEFLWSHGLISDESNIAILKSCKFDKRIKNVDVIDISK--ECDDILKQVEQEIGDYVNEYDVILDVCPPSLIEQELRLRKKVSHMSLGVDVCMTSERQFYFNLPNVQKALHANRTNLPYDWSMCSNVLNYSGYDEGIDILPVLKDIIQQGIRVWIFSGDQDSVVPLMGSRTNVRNLANDLKMSVKVPYRAWYHEGQVAGWTTVYGDLLTFATVRGASHMVPYSQPARALHLFRTFLSGKDLP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
793	80		20		0.995493
1037		12	87		0.992554
1039		87		12	0.992554
1040	87	12			0.992554
1041			12	87	0.992554
1045		12		75	0.975346
1046		12		87	0.992554
1050			12	75	0.975346
1051		12		87	0.992554
1052	12			87	0.992554
1053		87	12		0.992554
1054	12		75	12	0.975346
1055		12	75	12	0.975346
1056	87			12	0.992554
1057			85	14	0.993533
1058		14	85		0.993533
1059	14			85	0.993533
1097			25	75	0.996473
1168	11			88	0.923564
1170	88		11		0.923564
1171	88		11		0.923564
1261		16		83	0.994512
1270			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain