SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6722

Length: 1361 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6722

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RGB8_RICCO	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	ZAC	-	-	1.774e-13	-

Source	Gene names
Sma3	AGD11; AGD12; AGD13; At3g07940; At4g05330; At4g21160; B1147A04.36; C6L9.10; F17A17.28; F7J7.100; GSVIVT00029746001; MtrDRAFT_AC149032g32v2; MtrDRAFT_AC153125g13v2; OJ1112_F06.15; OSJNBa0088M05.12; OSJNBb0042G06.10; Os01g0951100; Os02g0198300; Os02g0327000

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phospholipid binding	GO:0005543	Molecular Function	-
Sma3	ARF GTPase activator activity	GO:0008060	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	regulation of ARF GTPase activity	GO:0032312	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07940.1	Calcium-dependent ARF-type GTPase activating protein family chr3:2529542-2531368 FORWARD LENGTH=385	66%
RefSeq	Arabidopsis thaliana	NP_187451.2	putative ADP-ribosylation factor GTPase-activating protein AGD11 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002299211.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ7

Fln msg: your sequence is shorter than subject: 172 - 370

Fln protein: MYEKKFTVRYGGISRFAKIKVVKGTNLAVRDMITSDPYVVLTIGHQTVKTRVIRSNLNPVWNEELMLSVPNPMPPLKVKVFDKDTFSSDDSMGEAEVNIEPLVSAAKAYMNAGIVGPVQVGKWLATSDNALASDSTINLIDGQVKQEVTLKLQNVESGTLEMELECVPLSQ*

Protein Length: 173

Fln nts: AATGTATGAAAAGAAATTCACTGTTAGGTATGGTGGAATTTCTAGGTTTGCTAAAATCAAAGTTGTGAAAGGCACAAACCTTGCTGTACGGGACATGATTACTAGTGATCCCTATGTTGTGCTGACAATTGGGCATCAAACTGTAAAGACACGAGTCATAAGGAGCAATTTAAACCCAGTTTGGAATGAAGAGCTTATGCTGTCTGTTCCAAATCCTATGCCTCCGCTGAAAGTGAAAGTCTTTGATAAAGACACCTTCTCATCAGATGACAGCATGGGCGAGGCTGAAGTCAATATTGAACCACTGGTTTCTGCTGCAAAAGCGTACATGAATGCAGGGATCGTTGGCCCTGTGCAGGTTGGAAAATGGCTGGCTACATCTGACAATGCACTTGCAAGTGATAGTACAATCAATCTTATTGATGGACAAGTCAAGCAGGAGGTAACCTTGAAACTGCAAAATGTGGAGTCTGGAACATTAGAGATGGAACTTGAGTGTGTTCCTCTCTCACAGTAG___CTTGATCTGTGTGTGACTTTGACCTAATTCAAGTGACTGACATGAGGGTGTTATGCAAGAATCAGAGCCAATGGGCTAGCTATACAAACTTAATCAAAGAGTTGTTTAACATCAGCTGGGGTCATATTAGTTTATTACGCTTTGTAAAGCTACCGAATGAGCTAATGCATATTTTGGATAATTATCAAATATCCATCCTTGTGACCATAATGGCTGGATTTACTGCAGTCATGTTCAGTGTCAATGAATACTGGCATGATGATTCTTTATAAGAAGAATGACTACTTCTATCCCTACACATGGTGCAGTAATGGGAAACACGTTAGATTAACTGTGGCAGAGAAATGATTAAGAGCCTTGTGAATAACTGGCTTTAGAAACCAGTTTAAAAATTGTATATTAATAGCAATGTTCTTGAGTCAGGGATGAGCAAAATGTGCTAGATTTGTGGATATAGCAACCATATATGGTTCTGAAAGGTTTGTCTAGGAAAAAATTGCTAGTTACCAGCTAGCAAGATGATGTGAGTTTTTTCCTTGAATATTCCTTTTATATTCAAGATTGTTTACAAAAGAAACATCATCATAAACTTTGGGCTTTGATACTAAAGGACACCGTAAAGCTTTATCCTAGAAGTTGTTGTAATTGTATTGCCTCCAGAAAGACATTGGATAAAGCTATATATCATTATTATATCCATGAATCTTTCTACTTACATGTTGGATATACGGTCTCATTGTATATTATTTTACCTCCATGGACATCCAAGGATGGTTCATATTTATCAAATACCTTTTTGGAAAATTACATTTATGTCTATAATATATCAGATTAATTCCAGGAC

Fln Alignment:

Contig6722___KIKVVKGTNLAVRDMITSDPYVVLTIGHQTVKTRVIRSNLNPVWNEELMLSVPNPMPPLKVKVFDKDTFSSDDSMGEAEVNIEPLVSAAKAYMNAGIVGPVQVGKWLATSDNALASDSTINLIDGQVKQEVTLKLQNVESGTLEMELECVPLSQ
B8LLJ7______________KIKVVKGTNLAVRDMVTSDPYVVLTIGHQTVKTRVIKSNLNPVWNEELMLSVPNPMPPLKVKVFDKDTFSSDDSMGEADVDIEPLVSAAKAYMNAGVFGTKQIGKWLATADNALASDSIINLIDGQVKQEVTLKLQNVESGILELELECVPLSQ

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
565	42		57		1.0
567			71	28	1.0
631		12		87	0.992554
687	11	88			0.923564
688	88		11		0.923564
804		87		12	0.992554
855		50	50		1.0
866		16	83		0.994512
906	20			80	0.995493
907	80	20			0.995493
909	80			20	0.995493
910	80			20	0.995493
913	20	20		60	0.99255
914		20	80		0.995493
915	20			80	0.995493
916	60	20		20	0.99255
918	75		25		0.996473
919	25			75	0.996473
920		25		75	0.996473
921	75	25			0.996473
922	75			25	0.996473
924	75		25		0.996473
927	75			25	0.996473
930		25	75		0.996473
931	25			75	0.996473
1046	40	60			1.0
1105			11	88	0.923564
1107	87	12			0.992554
1110			12	87	0.992554
1111			12	87	0.992554
1112	12			87	0.992554
1216		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain