SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6710

Length: 1956 nt

UniGene Fasta

>sp_v3.0_unigene6710
AAAGGAGGTTTTCCGAGAGGTTTCGGAAGTCTTGAAAGTGATTGTTTACCAATACATAAGCAGTGGAATCAACGCAGAGTACGCGGGGGTTCAACCGGATATACCAACATGGCAACTCCAGTGCGTACCTGACCTTGAAGCTTGAATTAAGGAGGATCTGCGATTTTATTGCTGTTTTCTTTATAGAGGGAATTCGGTGATCGAATACCATTGACAAAGATGAGTAAAATCGAGGCCTACCGCTGTGGTGTCGGAGATCTGTGGAAACGCCAGACCGGTGAAACATACCCGAGAACCTTCGCTCACCGCATGGGTGGTTGCCAGGATCTTATTCAGCGGCTTGAGCTCTCTGTCAAGCTGGGAAAACACAAGGGATGTGTAAATACTGTGCATTTTAATCCGACTGGTGACCTGCTTGTGTCAGGTTCTGATGACAAGGAAATTATAATTTGGGATTGGGCTGCTAATATTAAGAAACTATCTTTTCATTCTGGTCATACAAACAATGTTTTTCAGGCCAGAATTATGCCTTTCACAGATGATTGTTCTATTGTAAGCTGTGCTGCAGATGGACAGGTAAGGCTTAGTCAACTGCAGGAGGGAGGCCACGTTGACACAAGAAGGATAGGAAAGCACCGGGACCGTGCTCATAAACTTGCTATAGAGCCTGGAAGTCCTCACATATTCTTCAGCTGTGGTGAAGATGGAGTTGTCCTACGCTTTGATTTGAGAACCCAAAGTCCAACCAAAGTATTTACCTGCCACGCTTTTGGTGCAAACAAGTCAAGCCATTCTGCTATTGTGCGGCTTAATGCAATTGTGATAGATCCTAGGAATCCAAACTGTTTTGCTATTGGTGGTTCTGATGAATATGCTCGTGTTTATGACATTCGGAATTATCACTGGGATGCATCAACCAATGAAGATCGGCCAGTAGATTCATTCTCGCCTCGTCACCTGATTGGCAATGACCGGGTTAACATAACAGGTCTGGCTTATTCTAACCAAGGTGAATTACTTGCTTCATATAATGATGAGCTCATTTACTTGTTTCAAAAGGAAATGGGTTTGGGTCCCAACCCAAATTCCACTTCATCTGAGATGTCAGAGGAATTGGAAGCACCTCAGGTTTATGAAGGACATCGAAATGCCCGGACAGTGAAGGGTGTGAATTTTTTTGGTGCTAACACTGAGTATGTTGTGAGTGGATCTGATTGTGGACGAATATTTATTTGGAAGAAAAAAGGGGGGCAGCTAGTGCGTCTAATGAAAGGGGACAAGTGTGTGGTTAACTGTCTGGAGCCACATCCCTATGCAACTATTCTTGCCACTAGTGGCATTGAAAAAAACATCAAAGTATGGTCACCTACAGCACCTGATCTGTTCGCACTTCCTGATAACGTTGAAGAGTTGATGGAATCCAACAAACGTAAGAGAGAGCAGCAGGCACATATCTCTTTCACGCCTGATGTGATTATGCATGTATTAAGATTACAGAGGCGAGTCTCTGACCGAGATGGAGAGAGAAGGATTTCAAGAGAAGATTTTGAAGGTGAAGACGATGAAGACGATGATATGGATGGCTATGCAATGGACTTCACAACAGATGGTGACGATTCATCTGATGATGGTGATCACATGAATCCTCGAGATTGTATCATAAGTTGAAGTCTCTTTACTTTTATGGGTGCAAATCTGGTAATCAGCTAATGTAAATTTTCATTCAGAAGCCTCTGATTGTTTACTGTTAGTTTTTAAGATGACATAAGTGACATATTTGCAATGTGAATTTGTGCAAAAATATGACACAGAGGATTGATAAATGATAGTATTTTACTTGGAGTACCAAAATGCTATCCAATCTATATCATGTAAAAATCAAATATGAGAAAATTTTATGTAAATTTGAAGCTTGTGCCGTATAATAAATGGAATGTCAAGAAATTAATATACAAC

Ace file of the UniGene sp_v3.0_unigene6710

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T1Y8_RICCO	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Nucleotide binding protein	-	-	9.523e-07	-

Source	Gene names
Sma3	AT4g35140; AT4g38480; At3g45620; At3g45620/F9K21_200; At4g35140; F20M13.40; F9K21.200; GSVIVT00024466001; GSVIVT00036177001; LOC_Os03g17780; LOC_Os10g39760; OSJNBa0013D02.2; OSJNBa0063E23.1; OSJNBb0015I11.22; Os03g0286800; Os06g0724500; Os10g0544500; OsI_

Source	GOs	Term	Type	Identity
Sma3	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G45620.2	Transducin/WD40 repeat-like superfamily protein chr3:16745918-16747993 FORWARD LENGTH=515	52%
RefSeq	Arabidopsis thaliana	NP_190148.1	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002312940.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8L3

Fln msg: your sequence is longer than subject: 483 - 201

Fln protein: MSKIEAYRCGVGDLWKRQTGETYPRTFAHRMGGCQDLIQRLELSVKLGKHKGCVNTVHFNPTGDLLVSGSDDKEIIIWDWAANIKKLSFHSGHTNNVFQARIMPFTDDCSIVSCAADGQVRLSQLQEGGHVDTRRIGKHRDRAHKLAIEPGSPHIFFSCGEDGVVLRFDLRTQSPTKVFTCHAFGANKSSHSAIVRLNAIVIDPRNPNCFAIGGSDEYARVYDIRNYHWDASTNEDRPVDSFSPRHLIGNDRVNITGLAYSNQGELLASYNDELIYLFQKEMGLGPNPNSTSSEMSEELEAPQVYEGHRNARTVKGVNFFGANTEYVVSGSDCGRIFIWKKKGGQLVRLMKGDKCVVNCLEPHPYATILATSGIEKNIKVWSPTAPDLFALPDNVEELMESNKRKREQQAHISFTPDVIMHVLRLQRRVSDRDGERRISREDFEGEDDEDDDMDGYAMDFTTDGDDSSDDGDHMNPRDCIIS*

Protein Length: 484

Fln nts: AAAGGAGGTTTTCCGAGAGGTTTCGGAAGTCTTGAAAGTGATTGTTTACCAATACATAAGCAGTGGAATCAACGCAGAGTACGCGGGGGTTCAACCGGATATACCAACATGGCAACTCCAGTGCGTACCTGACCTTGAAGCTTGAATTAAGGAGGATCTGCGATTTTATTGCTGTTTTCTTTATAGAGGGAATTCGGTGATCGAATACCATTGACAAAG_-_ATGAGTAAAATCGAGGCCTACCGCTGTGGTGTCGGAGATCTGTGGAAACGCCAGACCGGTGAAACATACCCGAGAACCTTCGCTCACCGCATGGGTGGTTGCCAGGATCTTATTCAGCGGCTTGAGCTCTCTGTCAAGCTGGGAAAACACAAGGGATGTGTAAATACTGTGCATTTTAATCCGACTGGTGACCTGCTTGTGTCAGGTTCTGATGACAAGGAAATTATAATTTGGGATTGGGCTGCTAATATTAAGAAACTATCTTTTCATTCTGGTCATACAAACAATGTTTTTCAGGCCAGAATTATGCCTTTCACAGATGATTGTTCTATTGTAAGCTGTGCTGCAGATGGACAGGTAAGGCTTAGTCAACTGCAGGAGGGAGGCCACGTTGACACAAGAAGGATAGGAAAGCACCGGGACCGTGCTCATAAACTTGCTATAGAGCCTGGAAGTCCTCACATATTCTTCAGCTGTGGTGAAGATGGAGTTGTCCTACGCTTTGATTTGAGAACCCAAAGTCCAACCAAAGTATTTACCTGCCACGCTTTTGGTGCAAACAAGTCAAGCCATTCTGCTATTGTGCGGCTTAATGCAATTGTGATAGATCCTAGGAATCCAAACTGTTTTGCTATTGGTGGTTCTGATGAATATGCTCGTGTTTATGACATTCGGAATTATCACTGGGATGCATCAACCAATGAAGATCGGCCAGTAGATTCATTCTCGCCTCGTCACCTGATTGGCAATGACCGGGTTAACATAACAGGTCTGGCTTATTCTAACCAAGGTGAATTACTTGCTTCATATAATGATGAGCTCATTTACTTGTTTCAAAAGGAAATGGGTTTGGGTCCCAACCCAAATTCCACTTCATCTGAGATGTCAGAGGAATTGGAAGCACCTCAGGTTTATGAAGGACATCGAAATGCCCGGACAGTGAAGGGTGTGAATTTTTTTGGTGCTAACACTGAGTATGTTGTGAGTGGATCTGATTGTGGACGAATATTTATTTGGAAGAAAAAAGGGGGGCAGCTAGTGCGTCTAATGAAAGGGGACAAGTGTGTGGTTAACTGTCTGGAGCCACATCCCTATGCAACTATTCTTGCCACTAGTGGCATTGAAAAAAACATCAAAGTATGGTCACCTACAGCACCTGATCTGTTCGCACTTCCTGATAACGTTGAAGAGTTGATGGAATCCAACAAACGTAAGAGAGAGCAGCAGGCACATATCTCTTTCACGCCTGATGTGATTATGCATGTATTAAGATTACAGAGGCGAGTCTCTGACCGAGATGGAGAGAGAAGGATTTCAAGAGAAGATTTTGAAGGTGAAGACGATGAAGACGATGATATGGATGGCTATGCAATGGACTTCACAACAGATGGTGACGATTCATCTGATGATGGTGATCACATGAATCCTCGAGATTGTATCATAAGTTGA___AGTCTCTTTACTTTTATGGGTGCAAATCTGGTAATCAGCTAATGTAAATTTTCATTCAGAAGCCTCTGATTGTTTACTGTTAGTTTTTAAGATGACATAAGTGACATATTTGCAATGTGAATTTGTGCAAAAATATGACACAGAGGATTGATAAATGATAGTATTTTACTTGGAGTACCAAAATGCTATCCAATCTATATCATGTAAAAATCAAATATGAGAAAATTTTATGTAAATTTGAAGCTTGTGCCGTATAATAAATGGAATGTCAAGAAATTAATATACAAC

Fln Alignment:

Contig6710___MGLGPNPNSTSSEMSEELEAPQVYEGHRNARTVKGVNFFGANTEYVVSGSDCGRIFIWKKKGGQLVRLMKGDKCVVNCLEPHPYATILATSGIEKNIKVWSPTAPDLFALPDNVEELMESNKRKREQQAHISFTPDVIMHVLRLQRRVSDRDGERRISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMNPRDCIIS
D5A8L3______________MGLGPNPNSASSEMSEDLEAPQVYEGHRNAQTVKGVNFFGANTEYVVSGSDCGRIFIWKKKGGQLVHLMKGDKEVVNCLEPHPYATILATSGIEKNIKVWSPTASHLIPLPDNVEELMEANKRKREQHARISFTPDVIMHVLRLQRRVSKRDGDRRISREDFEGEDDEDDDMDGYAMDLTTDGDDSSEDGDRVNPRDCIIS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
660		12		87	0.992554
732	87			12	0.992554
733	75		12		0.975346
734		87	12		0.992554
735	12	87			0.992554
737	87			12	0.992554
738	87		12		0.992554
740			87	12	0.992554
742		87	12		0.992554
745	87			12	0.992554
746		87		12	0.992554
774	16			83	0.994512
778	83			16	0.994512
779	66			16	0.988813
806	16		83		0.994512
1049	16			83	0.994512
1050		16	83		0.994512
1051	16			83	0.994512
1133	75			25	0.996473
1563		10		90	0.90298
1580	88		11		0.923564
1648		85	14		0.993533
1852	11			88	0.923564
1853	11		88		0.923564
1854	11	88			0.923564
1938	12	87			0.992554
1939	87	12			0.992554
1953	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain