SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6709

Length: 1549 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6709 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcineurin B-like protein 3 [Populus euphratica]	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Calcineurin B, putative	-	-	1.536e-26	-

Source	Gene names
Sma3	24.t00062; 26.t00079; 40.t00066; At1g64480; At4g01420; At4g16350; At4g17615; At4g26560; At4g26570; At4g33000; At5g24270; At5g47100; At5g55990; B1142C05.7; CBL1; CBL10; CBL2; CBL3; CBL4; CBL5; CBL6; CBL7; CBL8; CBL9; CnB; F1N19.5; F26P21_120; F3D13.2; FCAA

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	detection of calcium ion	GO:0005513	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	potassium ion import	GO:0010107	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	calcium-mediated signaling	GO:0019722	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	hypotonic salinity response	GO:0042539	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Recoverin	IPR001125	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3		IPR014045	-	-
Sma3		IPR015757	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17615.1	CBL1, ATCBL1, SCABP5 calcineurin B-like protein 1 chr4:9817142-9818995 FORWARD LENGTH=213	66%
RefSeq	Arabidopsis thaliana	NP_194387.1	calcineurin B-like 3 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002298887.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKN8

Fln msg: your sequence is longer than subject: 268 - 213

Fln protein: MARSHCGYHRFSSIPSTPDLTSSLMRRSSLTIREKIGTAFLPLLAVLDYVIAILTSCFTAKSSKSPLGCEDPALLASETIFSVNEVEALYELFKKLSSSVTNDGVIHKEAFQLALFRSTSKESLFSDRIFDLFDLKHNGVIDFGEFVRSLSIFHPSAPLEDKIDFAFRLYDLRQTGYIEREEVKQMIVALLSESDMKLTDDILEAILDKTFSDADYRHDDRIDREEWRELVFRNPSLLKNMTLPYLKNLTTAFPSFVFYSEVDEVVN*

Protein Length: 269

Fln nts: TCATTCGAGTGGGAATGAAGTTATCCCTTCAAATGGAAGTGAAGTGAATTTAATTTAACTGAACGTACCAGAATACCGCAGGC_-_ATGGCCAGATCCCATTGTGGATACCACAGGTTCTCCAGCATCCCTTCGACACCAGATCTCACCTCTTCACTTATGCGGAGAAGCTCGCTTACAATTCGAGAGAAAATTGGAACTGCATTTCTCCCGCTTTTAGCAGTTTTAGACTATGTGATCGCCATTCTCACCAGTTGTTTTACTGCAAAGTCTAGTAAAAGCCCACTAGGCTGTGAAGATCCGGCTTTGCTGGCTTCTGAAACAATCTTTTCCGTAAATGAAGTTGAGGCCTTGTATGAGCTATTTAAGAAATTAAGTAGCTCTGTCACTAACGATGGTGTGATACACAAGGAAGCATTCCAGCTAGCTTTGTTCAGGAGCACATCCAAGGAGAGCCTTTTTTCAGATAGAATTTTTGATCTATTTGATTTGAAGCACAATGGAGTGATTGACTTTGGGGAGTTTGTTCGCTCTCTTAGCATTTTCCATCCATCTGCACCCCTCGAAGACAAGATTGATTTTGCCTTTAGGCTTTATGACTTGAGGCAAACGGGCTACATTGAGCGTGAAGAAGTAAAGCAGATGATAGTAGCCCTCCTGAGTGAGTCAGACATGAAATTGACGGATGACATTCTTGAAGCTATATTGGATAAGACATTTTCAGATGCAGATTATCGTCATGATGATAGGATTGATAGAGAAGAATGGAGAGAGCTTGTTTTTCGAAACCCTTCTTTGTTAAAGAATATGACTCTACCCTATTTGAAGAACTTAACAACGGCATTTCCGAGTTTTGTTTTCTACTCTGAAGTGGATGAAGTAGTCAACTAA___GTCTCTATATATCGCAGGAGAATCCATCTTCAAGAAAACAGATTTTCCTATATTGATCATCAATTGATGATTTAATCCACATTGTCCCTATCTGAGGCAATTCCAAATGCAAGGAATTTTCAGAACCTGGTTTCTTACGATGGTTACAGTGATGAAGAGCAGTGGTCAAGTTATTATGGTTGCTGAAAATATTATCGACGGTGTTTGCTTCAAAAGTATGGGCAGCATGAAGAGATAATTTGCATTCAATCATATAAACGAATTCATGAGTAGAGTGACCATGTATGTATTTACACTGTACTTGAAAATGTTTACTTTAGAGTTGATAGGTTTCCAAAATCTTTGAAGGGATATCTGGAAACTACAACTTCGCGCTTTCCAATCTGGTCAATTGGATGGACCGGATTGAGCTCTTAAAAGAGACTTTTGTGGCTATGCATTTCATGCATGTATACAGGGATTTTAATCAAGAGGCGGATAGACTATCAAAGGAAGGTATATCGGGTGCTCCTGGTATTATATTTTACAGGTTCAGATCGGATGATGCGTTGCTGGACGAGGGAGAGATTGCCTTCAGTTGATTTTGCTGGCTCATCCACAGACATATACATATTTTCCTGATGCACCTTTTTAGGTTTATATTTTTGGTAGTTTTATATATT

Fln Alignment:

Contig6709___CFTAKSSKSPLGCEDPALLASETIFSVNEVEALYELFKKLSSSVTNDGVIHKEAFQLALFRSTSKESLFSDRIFDLFDLKHNGVIDFGEFVRSLSIFHPSAPLEDKIDFAFRLYDLRQTGYIEREEVKQMIVALLSESDMKLTDDILEAILDKTFSDADYRHDDRIDREEWRELVFRNPSLLKNMTLPYLKNLTTAFPSFVFYSEVDEV
B8LKN8______________CFNSKFTKHSPGYEDPVKLAAETAFSVSEVEALYELFKKISSSVIDDGLINKEEFQLALFKNSKKENLFADRVFDLFDVKRKGVIDFGDFVRSLSVFHPNAPQEDKIDFAFKLYDLQCTGYIEREEVKQMLIALLCESEMKLADEVIETILDKTFQEADVDQDGRIDRDEWQKFVSHNPSLMKIMTLPYLKDITTTFPSFVFNSEVDDI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
114	80	20			0.995493
243		83	16		0.994512
253		12		87	0.992554
352	90		10		0.90298
359		90		10	0.90298
430	11			88	0.923564
448		33		66	1.0
449		33		66	1.0
450	33			66	1.0
458	75	25			0.996473
460		75		25	0.996473
461	80			20	0.995493
533		85		14	0.993533
534		85	14		0.993533
535	85			14	0.993533
559			57	42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain