SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6690

Length: 2575 nt

UniGene Fasta

>sp_v3.0_unigene6690
GTCAAATGGAGTTCTTGAACATCAAGCTTCAAGCAATGCATCTAATTCAGAATTGTTATCTCATGCCTCTCAGAATGGTAGCCTCGAATCTGCTTCAGAACACAATGACCAAACGAAACCTACAGTCGAGCTTCCCGAACATACAACCACTGAACTGCATAATGAAAGTAAAACAAATGTCACTAAAGAAGACCATGTTGGTAGTGATGAGGAATCCATGCATGATATACTAAATATGGGAGTAACAACAAACGCTACTGATACAGTAAAGTCAATGGGTTCTCAGAGGCGGCTTCTTACAGAATCTGAAACAGAAATTTCCAAGGAAGGTGATACCGAAGGAGCTGCTACTGTAAAAAATAATCAGGATCTGGCGGAGGAGGCAGATTCTTCTTTTGATCTGTTTCGAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATCCAAAAACCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTTAGCAGAATTGGGTGATATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTTGATCTGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGGAAAAACAAGGGGAGGCTTTCCACTACAAATGGGTGAGATTCAAGGACAAGTCATAGCTGCTGACATTAATGATGATGGGAAAATTGAAATGGTCACAACTGATACACGAGGCAATGTGGCTGCATGGACTACTCAAGGAAAAGAAATTTGGGAACAACATTTAAAGAGTCTTATTGCACAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACATTTATGTTCTGAATGGAAAGGATGGATCATATGTGAAGCCATTCCCTTATCGCACTCATGGGAGGATCATGAGTCCAGTCCTTCTGGTTGACCTGAGTAAGCGTGGAGAAAATCGTAAAGGGCTAACTCTTGCTACAACATCATTTGATGGTTACTTCTATCTTATTGACGGCCAAACAGCTTGTGCTGATGTTATTGATATTGGAGAGACTTCATATAGCATGGTTCTAGCTGATAATGTTGATGGAGGTGATGATCTTGATCTCATTGTGACAACCATGAATGGAAATGTATTCTGCTTTTCAACTCCTGCTCCACATCATCCAATGAAGACGTGGACATCACAAACACAGGGAAGAAGTAATGTTGCAAGTCGTCATAATCGTGAAGGAATTTTTGTTTTACCATCATCTAGGGTTATGCGAGATGAGGAAGGTGACAGTTTCTGGTTACAATTCAAAATTTTGGACCAACATCGAGTCCCTTCAGGATCACATGGGCCTTATAATGTTACGGTGTCACTTCTAGTTCCTGGAAATTACCAGGGTCCAAGAAGGATATTACAACATCAGATATATGATCGGCCTGATACCTACAAAATGAAGTTACCAACAGTACCTGTGCGAACAACAGGGACAGTTATTGTAGAGATGGTTGACAAGAATGGATTGTACTTCTCAGATGAATTCTCTCTCACCTTCCATATGCACTATTACAAGCTATTGAAGTGGCTTCTTGTTCTTCCAATGGTTGGAATGTTTGGCTTACTTGTGATTTTCCGTCCACAAGAAGGTGCACCTTTGCCATCATTCTCTAGAAACAACCACCAGCTTTAGAGTGGCGAAGGAAAGGCATGGCTCCTTGTGTACAATATTGCAGTTTATACTCATTTCAGATAACTAGTTCTGGCCGGGAAAAATTTGTGCAGCACAAGAGAATTGATAACAGTTTTCCTTCAACAATTCATGAACATGTAATTCTGTCGGAGATTACTTAGAGTGACTCCCTAGCCGCATCGCCTTATCATGAATATTCCAAAGGTCAGTCATAAAATTGAGGCAGAAATGGACATCATTATGGTTTCTAGAGCTGCCAAGTAAACATTTTAACAAGGGTGCTTTTACATAACGATTTCTTTACCTAACATTAACGGACAATTGTTAACTGAAAATAGAAAGCTCGAGTAGAAAGAATGTCAATTTCAAAGAAATTTCAAGACTTGCTTCTTAAAGGAAAAAAAGATAAGTGCTATAAAAGAAGTAAAGAAACTAGCCACTAAAAGGAAGCATGAAACAAATGAGAACCACATCTAGCAAGCATAGCGCTGTTGTTGAAAAACTTCTCTGAATTCAATGCATGCCTTGGTGAGCTCAGAGTGTAATACTTTGACTTGGGCTCAACAAAAACTTGCCAACATAAATTGTTCAAAACAGTC

Ace file of the UniGene sp_v3.0_unigene6690

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	defective in exine formation [Arabidopsis thaliana]	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	38%

Source	Gene names
Sma3	At3g09090; DEX1; GSVIVT00021462001; LOC_Os03g61050; MICPUCDRAFT_32230; MICPUN_88340; MZB10.12; OJ1111_B11.16; Os03g0825700; OsI_14141; OsJ_13190; PHYPADRAFT_172150; POPTRDRAFT_735721; RCOM_0085050; VITISV_018283;

Source	GOs	Term	Type	e value	Identity
Sma3	pollen wall assembly	GO:0010208	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	FG-GAP	IPR013517	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09090.1	DEX1 defective in exine formation protein (DEX1) chr3:2782912-2787552 REVERSE LENGTH=896	76%
RefSeq	Arabidopsis thaliana	NP_566343.1	defective in exine formation protein (DEX1) [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002322957.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SPE1

Fln msg: Overlapping hits, possible frame ERROR between 514 and 510, your sequence is shorter than subject: 659 - 868

Fln protein: SNGVLEHQASSNASNSELLSHASQNGSLESASEHNDQTKPTVELPEHTTTELHNESKTNVTKEDHVGSDEESMHDILNMGVTTNATDTVKSMGSQRRLLTESETEISKEGDTEGAATVKNNQDLAEEADSSFDLFRDGEDGLTDEYAYDYDDYVDESAWGDEDFAEAQHxxxPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHLAELGDIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVDLDGDGYLDILVGTSFGFFYVLDHHGKTRGGFPLQMGEIQGQVIAADINDDGKIEMVTTDTRGNVAAWTTQGKEIWEQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGNIYVLNGKDGSYVKPFPYRTHGRIMSPVLLVDLSKRGENRKGLTLATTSFDGYFYLIDGQTACADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPMKTWTSQTQGRSNVASRHNREGIFVLPSSRVMRDEEGDSFWLQFKILDQHRVPSGSHGPYNVTVSLLVPGNYQGPRRILQHQIYDRPDTYKMKLPTVPVRTTGTVIVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMVGMFGLLVIFRPQEGAPLPSFSRNNHQL*

Protein Length: 660

Fln nts: GTCAAATGGAGTTCTTGAACATCAAGCTTCAAGCAATGCATCTAATTCAGAATTGTTATCTCATGCCTCTCAGAATGGTAGCCTCGAATCTGCTTCAGAACACAATGACCAAACGAAACCTACAGTCGAGCTTCCCGAACATACAACCACTGAACTGCATAATGAAAGTAAAACAAATGTCACTAAAGAAGACCATGTTGGTAGTGATGAGGAATCCATGCATGATATACTAAATATGGGAGTAACAACAAACGCTACTGATACAGTAAAGTCAATGGGTTCTCAGAGGCGGCTTCTTACAGAATCTGAAACAGAAATTTCCAAGGAAGGTGATACCGAAGGAGCTGCTACTGTAAAAAATAATCAGGATCTGGCGGAGGAGGCAGATTCTTCTTTTGATCTGTTTCGAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATxxxxxxxxxCCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTTAGCAGAATTGGGTGATATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTTGATCTGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGGAAAAACAAGGGGAGGCTTTCCACTACAAATGGGTGAGATTCAAGGACAAGTCATAGCTGCTGACATTAATGATGATGGGAAAATTGAAATGGTCACAACTGATACACGAGGCAATGTGGCTGCATGGACTACTCAAGGAAAAGAAATTTGGGAACAACATTTAAAGAGTCTTATTGCACAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACATTTATGTTCTGAATGGAAAGGATGGATCATATGTGAAGCCATTCCCTTATCGCACTCATGGGAGGATCATGAGTCCAGTCCTTCTGGTTGACCTGAGTAAGCGTGGAGAAAATCGTAAAGGGCTAACTCTTGCTACAACATCATTTGATGGTTACTTCTATCTTATTGACGGCCAAACAGCTTGTGCTGATGTTATTGATATTGGAGAGACTTCATATAGCATGGTTCTAGCTGATAATGTTGATGGAGGTGATGATCTTGATCTCATTGTGACAACCATGAATGGAAATGTATTCTGCTTTTCAACTCCTGCTCCACATCATCCAATGAAGACGTGGACATCACAAACACAGGGAAGAAGTAATGTTGCAAGTCGTCATAATCGTGAAGGAATTTTTGTTTTACCATCATCTAGGGTTATGCGAGATGAGGAAGGTGACAGTTTCTGGTTACAATTCAAAATTTTGGACCAACATCGAGTCCCTTCAGGATCACATGGGCCTTATAATGTTACGGTGTCACTTCTAGTTCCTGGAAATTACCAGGGTCCAAGAAGGATATTACAACATCAGATATATGATCGGCCTGATACCTACAAAATGAAGTTACCAACAGTACCTGTGCGAACAACAGGGACAGTTATTGTAGAGATGGTTGACAAGAATGGATTGTACTTCTCAGATGAATTCTCTCTCACCTTCCATATGCACTATTACAAGCTATTGAAGTGGCTTCTTGTTCTTCCAATGGTTGGAATGTTTGGCTTACTTGTGATTTTCCGTCCACAAGAAGGTGCACCTTTGCCATCATTCTCTAGAAACAACCACCAGCTTTAGAGTGGCGAAGGAAAGGCATGGCTCCTTGTGTACAATATTGCAGTTTATACTCATTTCAGATAACTAGTTCTGGCCGGGAAAAATTTGTGCAGCACAAGAGAATTGATAACAGTTTTCCTTCAACAATTCATGAACATGTAATTCTGTCGGAGATTACTTAGAGTGACTCCCTAGCCGCATCGCCTTATCATGAATATTCCAAAGGTCAGTCATAAAATTGAGGCAGAAATGGACATCATTATGGTTTCTAGAGCTGCCAAGTAAACATTTTAACAAGGGTGCTTTTACATAACGATTTCTTTACCTAACATTAACGGACAATTGTTAACTGAAAATAGAAAGCTCGAGTAGAAAGAATGTCAATTTCAAAGAAATTTCAAGACTTGCTTCTTAAAGGAAAAAAAGATAAGTGCTATAAAAGAAGTAAAGAAACTAGCCACTAAAAGGAAGCATGAAACAAATGAGAACCACATCTAGCAAGCATAGCGCTGTTGTTGAAAAACTTCTCTGAATTCAATGCATGCCTTGGTGAGCTCAGAGTGTAATACTTTGACTTGGGCTCAACAAAAACTTGCCAACATAAATTGTTCAAAACAGTC

Fln Alignment:

Contig6690___HNDQTKPTVELPEHTTTELHNESKTNVTKEDHVGSDEESMHDILNMGVTTNATDTVKSMGSQRRLLTESETEISKEGDTEGA---------ATVKNNQDLAEEADSSFDLFRDGEDGLTXXXXXXXXXXXXXSAWGDEDFAEAQHxxPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHLAELGDIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVDLDGDGYLDILVGTSFGFFYVLDHHGKTRGGFPLQMGEIQGQVIAADINDDGKIEMVTTDTRGNVAAWTTQGKEIWEQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGNIYVLNGKDGSYVKPFPYRTHGRIMSPVLLVDLSKRGENRKGLTLATTSFDGYFYLIDGQTACADVIDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPMKTWTSQTQGRSNVASRHNREGIFVLPSSRVMRDEEGDSFWLQFKILDQHRVPSGSHGPYNVTVSLLVPGNYQGPRRILQHQIYDRPDTYKMKLPTVPVRTTGTVIVEMVDKNGLYFSDEFSLTFHMHYYKLLKWLLVLPMVGMFGLLVIFRPQEGAPLPSFSRN
B9SPE1______________NENQTDPIIKLPINMDNSSKDTMSAGLNNPEN-GNNTES--------VGTNTTE--KGTKTGRRLLEDDKTKDSQEGSLESGENNSENVHEATVENDEGLEADADSSFELFRD-TDELADEYSYDYDDYVDDTMWGDEEWTEEKHxxLEDYVNIDSHILCTPVIADIDNDGVSEIIVAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGSIVVFNLDTKQVKWTKELDLSTDTSTFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGNIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTSQGKEIWERHLKSLVSQGPTVGDVDGDGRTDVVVPTISGNIYVLSGKDGSIVRPYPYRTHGRVMNQVLLVDLSKRGEKSKGLSLVTTSFDGYLYLIDGPTSCADVVDIGETSYSTVLADNVDGGDDLDLIVTTMNGNVFCFSTPVPHHPLKAWRSANQGRNNVANRYNREGVYITPSSRAFRDEEGKNFWLEIEIVDKYRYPSGSQAPYKVSTTLLVPGNYQGERRIKQNETFDRPGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLVILRPQEAMPLPSFSRN

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1887			20	80	0.995493
1890		80	20		0.995493
1891	80			20	0.995493
1892	80		20		0.995493
1893	20			80	0.995493
1894		20	80		0.995493
1895		20	80		0.995493
1901	80	20			0.995493
1905		20		80	0.995493
1906	20			80	0.995493
1907		11	88		0.923564
1908			88	11	0.923564
2163	9		90		0.999842
2168	88		8		0.999262
2171	92		8		0.999718
2174	88	4			0.999262
2176		8		92	0.999718
2311		20		80	0.999996
2331	80	20			0.995493
2333	80	20			0.995493
2387	66		33		0.997452
2447	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain