SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6675

Length: 1503 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6675

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polcalcin (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9H5_PSEMZ	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Polcalcin Jun o 2	-	-	2.54e-09	-

Source	Gene names
Sma3	At1g18210; At1g24620; At1g66400; At1g73630; At2g15680; At5g37770; B1147A04.18; CML1; CML10; CML18; CML23; CML24; CML25; CML26; CML27; F21J9.28; F25P22.4; F9O13.23; GSVIVT00017815001; GSVIVT00022396001; GSVIVT00026362001; GSVIVT00036584001; K22F20.1; LOC_O

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to absence of light	GO:0009646	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to metal ion	GO:0010038	Biological Process	-
Sma3	calcium-mediated signaling	GO:0019722	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3	long-day photoperiodism, flowering	GO:0048574	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Recoverin	IPR001125	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G24620.1	EF hand calcium-binding protein family chr1:8723893-8724453 REVERSE LENGTH=186	52%
RefSeq	Arabidopsis thaliana	NP_173866.1	putative calcium-binding protein CML25 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002314786.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1R0

Fln msg: your sequence is longer than subject: 226 - 194

Fln protein: MGLQRLLTLRRSQSQPSSPRLSESGSRRQSGSQLSSIKFLSKKIFTQHRRSSSSQPETPRSPRVSFFGSGRSNHIDSSLASTRLVKDLEDVFKKFDANGDGKISWLELRSILSSLGCKATEEEVKKMIKEADRDGDGFIDLQEFVDLNTQGIDSASSLKDLRDAFEIFDLDRNGAISSEELHIVLRNLGEHTTMEDCQLMIRGVDCDGNGQVDFEEFKTMMSSSI*

Protein Length: 227

Fln nts: ATGGGGCGTCTACCATGCATGCTTTGTTTAGGTGATACTTCCATTTTGTAAGCATGGCCAACGACCTTGATGTATTCTGGGCGCTTTAGTTGATTCTTCGCAGCGGGCCAGGCGAAGATTTCTGAGGAATATTGAAATTTGACACTTGTAAACCATCCTGGCAGCAGTAAGAGTCTTCAATAGGGATTTTGGTCTTCCCAAAAAGATTCCAAGATAAATATCGTTACCCGTCATATTTGGGTTCGTCAGGGAAATTGCAGCTACTAGCAGCCGTAATTACGTTGATAATTTTGTCTGGCCATAAACGGGCTCTCACCTGCAAATCTTTTTGGCGGTTCACGAAACTACTTGCTTTATATTAGAAACCTCTTGGAAGTTACGGGAAAGATTTTAGCTATTGGAGTGACGGCATTGCGGTTGCTGAGAAAGAGCAGCTGTTAAAGATTGCTTGTTCTGGGCGGCAACTTTGCTGATCTGGTCATTATATGGTAAGAAACCCTCAACTAAACAAGCTTTTCGTGGTGCAAGCGAGAGTCTAGCGGGTAAAGAAGCTTTCTGCAGGCACAGAGTTCGAAGAAGG_-_ATGGGATTGCAGCGGTTATTAACTCTTAGGCGGTCTCAATCACAGCCAAGTTCGCCACGGCTATCCGAATCAGGTTCTCGGCGTCAGTCAGGTTCGCAATTGTCATCAATCAAGTTTTTAAGCAAGAAAATATTCACCCAACATAGGCGTTCTTCCTCCTCCCAACCTGAAACTCCAAGATCTCCGAGGGTTTCTTTCTTCGGAAGCGGCAGATCGAATCACATTGACTCCAGCCTTGCATCCACCCGACTTGTCAAAGATCTGGAAGATGTTTTTAAGAAATTTGACGCTAACGGAGATGGAAAGATATCGTGGCTGGAGCTCAGGTCGATCTTGAGTTCCCTTGGTTGCAAGGCAACCGAAGAAGAGGTGAAGAAGATGATCAAAGAAGCGGACCGCGACGGAGACGGTTTCATTGATTTGCAAGAATTCGTCGATTTGAATACACAAGGCATCGATTCTGCTTCCAGCCTGAAGGATCTGAGAGATGCTTTTGAAATTTTTGATTTGGATAGAAACGGGGCAATTTCTTCAGAGGAGCTTCACATTGTTCTGCGAAACCTGGGAGAGCACACCACAATGGAGGACTGTCAATTGATGATAAGGGGTGTAGATTGCGATGGAAACGGGCAAGTTGATTTCGAAGAATTCAAAACTATGATGTCCAGTTCCATATAG___ATGCTATTTTTTCTGACATGTTATGCAAGTGCATACATTAATGCCGTTGTTTCTGTTTGGACATGGTTTCTTATTTTGGGCTCTTTTTTTTTTTGCCAATTTTCTGGAAGGTCAATTCGTCTCTCGAATGATATAAAGGGAGGCATCGTTTTGGTGATTAAATGTTGGTATGGATTTGTACATAAAAAATTTGAAGACCTCTCCTTGCCAGTTTGGTGTGATCTATTTTTAAAATTGTGTCTGAT

Fln Alignment:

Contig6675___SSSSQPETPRSPRVSFFGSGRSNHIDSSLASTRLVKDLEDVFKKFDANGDGKISWLELRSILSSLGCKATEEEVKKMIKEADRDGDGFIDLQEFVDLNTQGIDSASSLKDLRDAFEIFDLDRNGAISSEELHIVLRNLGEHTTMEDCQLMIRGVDCDGNGQVDFEEFKTMMSSS
A9P1R0______________SSRSEPSEPSSVSESLAGALHNR------------EELEDVFKRFDANGDGKISSSELGDILRSMGCRVGPRELGLMMKEADADGDGFISLEEFIDLNTKGNDKAACLEDLKNAFKIFDLDRNGSISADELYQVLKGMGDGSSREDCQNMITGVDRNGDGLINFEEFKTMMTTS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
597			20	80	0.995493
598	80			20	0.995493
624	90	10			0.90298
627		90		10	0.90298
724	10			90	0.90298
726			90	10	0.90298
728		90		10	0.90298
889	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain