SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6666

Length: 3232 nt

UniGene Fasta

>sp_v3.0_unigene6666
CGTCGTGACCTTGGCTGTCATCGCGAGACCCTTTCGTACTACCTCTCTCCAAGGGTTTTCCAACTAAGTTTCCCGCCTTAACGCACCTGCGCCGTTCCCTCCCTGTATTTGTTCGGCTCTTCCTTCATTGTTTCTCTCATTCCATTACAAATCCTCTTCTTCAGGTGGCAGGTTCGATTCCTGGTCACTCGTATCCTTAGCCAGTGCCTTTTTCTTTTTTTCTTTCTATCGAAACAGTGAAGAATCGACGTAGCAGAGCAAGTCTTCAGATTTTAAAAATGGCGAAGGATTCAACTGCCAGTCTTAAAGGAGACGCACATTCACCTATATCTGTTTTAGAAGATGAGGGAATGTCTAGAAGTGAAGCGCCAGTTGTTGATATAGAGGATAATGATTTATCAATTCATGGCGAAGCATTGGAAGTTCCAGAGGATATGGCCATGGAGGAGAAACGCCTAGAAGAAGAACGAGCTGAGCGAGAAAAGAAGGAAATGGAAAAACAACTGAGCAATGGGAGTTCACAGATGGATCATTTATTATTTAACAAATTGGATGAGCTTCTTAGCCAGACTCAACTTTATTCAGAGTTTCTGCTTGAGAAGATGGATGACATCACATTTATTCCAAGTGAGAATGGCAATGCAAAAGCAAGTGCGGTGAAAAAAAGTGGTAGGGGTCGAAAGCGTAAGATGGTGACTAATAATGCAGACTCTTATCAGACAAAGAAAAAGTCAAAAAATGCTATCAATGCTATGACTGAGAATTGCATAGGAGACACCCCAGTTCAAACTTCTGATAATTTAACAGACGAGGAGAGGAACTGGAAAGAGCAGATGGAACTTGTTCCTCTATTGATCGGGGGAAGGTTAAAGTCCTATCAAATTAAGGGTGTAAAGTGGTTGATTTCTCTCTGGCAAAATGGGCTCAATGGAATCCTGGCAGATCAAATGGGTCTAGGAAAGACAGTGCAGACTATTGGTCTCCTTGCTCATCTCAAGGGGATGGGCATGCATGGGCCCTTTTTAGTAGTTGCTCCTCTTTCAACTCTCTCGAATTGGGTGAATGAAATCAATAGGTTTGTTCCAAGCATGAATGCTATAATCTATCATGGCTCCAAAATTGAGCGACAAGAGCTGAGGAAAATCCACATGCCTCCCACAGTGGGCCCAACATTCCCTGTTATTGTCACTTCTTATGAGGTTGCAATGAATGATAGCAAGGCTTTGGCTCGCTATGATTGGAAATATATAGTTGTTGATGAGGGACACCGATTAAAAAACTCCAACTGCAAATTGCTGAGGGAATTGAAAACCTTACCTGCTGAAAATAAGCTGCTTTTGACTGGAACACCCCTACAAAATAATTTGGCGGAACTTTGGTCCTTGCTGAATTTCATTTTGCCTCAAATATTCACATCACGTGAAGAGTTTGAATCTTGGTTTGATCTAGCTGGGAAACAAAGCAATGGGATGAGGCAGGAAGAAATTGAAGAGAAAAGAAGAGTTCAAGTAATTTCAAAGCTTCATTTGATCCTTCGACCATTTCTTCTCAGAAGGCTGAAAGAAGAGGTTGAGCAGTCCCTGCCCAGGAAAAAAGAGATAATTTTGTATGCAGATATGACAGAACATCAGAAGCAGATCCAAGATCATTTGGTCAACAAAACACTTGAGGTTTATTTGCACAATAAATCAGAAAATGGCACAGGCCTAAAGGGAAAGCTGAACAATTTGATGATTCAACTGCGCAAGAATTGCAACCACCCTGATCTTTTGGAGTCACAGTTCGATCAATCATTTGAATATCCACCGGTGGAGCAGTTGGTTAAGCAGTGTGGTAAATTTGGTTTGCTAGAGAGGCTATTAACACATTTGAAAGCTCAGAAACACAAGATGTTGATATTTTCTCAATGGACTAAAGTTCTTGACTTGCTGGAATACTATTTAAGTGAGAGAGGATATGAGGTTTGTCGCATTGATGGAAGTGTTAAGTTGGAAGATAGGAAAAATCAGATAAGGGATTTCAATGACCCAGATAGCAACTTTTGTATCTTTTTGCTAAGCACACGGGCTGGTGGTCTTGGAATCAATCTTACTGCTGCAGACACTTGTATTATCTATGATAGTGATTGGAATCCTCAAATGGATATGCAAGCTATGGATCGATGCCACAGGATTGGACAAACACGACCTGTACATGTTTACAGGCTTATCACAGCACACTCTGTGGAGGGTCGCATGCTTAAAGTAGCGTTTGGTAAGTTAAAGTTGGAGCACTTGGTGATTGAGAAAGGACAATTTCGTCAGGAACGGAATACCAACATGCTAGAGGAATCAGATCTACTTGCTTTGATCCAGCAAGAAAAAGATGAAGAGGAGGAACTCATTGAGTGTGAAATTAGTGAATCAAATCTTGTCAGGCTGATGGACCGTTCTGATATGCTAAACGATTCAGCTGAACATGCAAGTGCAAATGCTGATACTCTTCCTCTCAAGGGGCCTGGTTGGGAGGTAGTAGTACGCAGTGGACAAGGTGGGAGTGTGCTGTCTTCAATTGAAGGCTAGCAAAAATTCTCTTCTGATACCAGCGACTTGAACAATAAATTATAATGGCCCTTTTGTTCTGTTTTGGTGTTATGCCCTATGGACTATAGTTGGTGTATTTTTGTAATCCCCATTAATTCTATTGATCATTTTCTCTCAGGGGACTGTCTTATCCATCTATTGTAGTTTAGTGCTCAGGCATGTCGCAATGTCTCATATAGGGATGATTTTACAAGGGATCACAGTGCATTGTTGTGGAATTTAAAGGCCAAATTAATCTCAAGCCTTTTGACAGCTCTGAAAAATGTAACATATTTTTGGCGTGTACTTGGTGGAAAGCTGGCAGCTTATTTCCTCTGTAATACACATGGTAAACTGATGTCTGTAAATTTATGTCGGTATATCCAGATGACTACGTTTAGTCTGTCAATGGAAGTTTTGATCATAATGCAATGTTTCAGGGGTTATGCCTATGGTGTTTCATGGTCCTTGTGATAAACATTCTGGTCTTAAGATGGTTTCAGGATTTCCTTTATTGGACAGTCCTGTAATCTCTGTGGTAAAGTATGGTTGAAACTGTTCTATATGTTTTAGCTGTGTTACTGATTAAGTCCTAGGTGTTTGATTGCATTATCATGTAATGGTATATAGGTGAGATATTTGTAATGACAGGTTAAATCCTTTTTAACTGG

Ace file of the UniGene sp_v3.0_unigene6666

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ISWI chromatin remodeling complex ATPase ISW1, putative n=1 Tax=Ricinus communis RepID=B9S6I7_RICCO	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	SNF2 super family	-	-	1.796e-12	-

Source	Gene names
Sma3	At2g46020; At3g06010; At5g19310; BRM; CHLREDRAFT_188131; CHLREDRAFT_196757; CHR1519; CHR1521; CHR1530; CHR1536; CHR1546; CHR3503; CHR3504; CHR3506; CHR904; CHR905; CHR916; CHR917; DDM1; DDM1b; F2O10.3; GSVIVT00019937001; GSVIVT00024954001; GSVIVT000253710

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin remodeling complex	GO:0016585	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleosome binding	GO:0031491	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	regulation of gene expression, epigenetic	GO:0040029	Biological Process	-
Sma3	ATP-dependent chromatin remodeling	GO:0043044	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	HSA	IPR006562	-	-
Sma3		IPR012287	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66750.1	DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 chromatin remodeling 1 chr5:26649050-26652869 FORWARD LENGTH=764	61%
RefSeq	Arabidopsis thaliana	NP_201476.1	chromatin remodeling 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002325643.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: your sequence is longer than subject: 761 - 377

Fln protein: MAKDSTASLKGDAHSPISVLEDEGMSRSEAPVVDIEDNDLSIHGEALEVPEDMAMEEKRLEEERAEREKKEMEKQLSNGSSQMDHLLFNKLDELLSQTQLYSEFLLEKMDDITFIPSENGNAKASAVKKSGRGRKRKMVTNNADSYQTKKKSKNAINAMTENCIGDTPVQTSDNLTDEERNWKEQMELVPLLIGGRLKSYQIKGVKWLISLWQNGLNGILADQMGLGKTVQTIGLLAHLKGMGMHGPFLVVAPLSTLSNWVNEINRFVPSMNAIIYHGSKIERQELRKIHMPPTVGPTFPVIVTSYEVAMNDSKALARYDWKYIVVDEGHRLKNSNCKLLRELKTLPAENKLLLTGTPLQNNLAELWSLLNFILPQIFTSREEFESWFDLAGKQSNGMRQEEIEEKRRVQVISKLHLILRPFLLRRLKEEVEQSLPRKKEIILYADMTEHQKQIQDHLVNKTLEVYLHNKSENGTGLKGKLNNLMIQLRKNCNHPDLLESQFDQSFEYPPVEQLVKQCGKFGLLERLLTHLKAQKHKMLIFSQWTKVLDLLEYYLSERGYEVCRIDGSVKLEDRKNQIRDFNDPDSNFCIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDMQAMDRCHRIGQTRPVHVYRLITAHSVEGRMLKVAFGKLKLEHLVIEKGQFRQERNTNMLEESDLLALIQQEKDEEEELIECEISESNLVRLMDRSDMLNDSAEHASANADTLPLKGPGWEVVVRSGQGGSVLSSIEG*

Protein Length: 762

Fln nts: CGTCGTGACCTTGGCTGTCATCGCGAGACCCTTTCGTACTACCTCTCTCCAAGGGTTTTCCAACTAAGTTTCCCGCCTTAACGCACCTGCGCCGTTCCCTCCCTGTATTTGTTCGGCTCTTCCTTCATTGTTTCTCTCATTCCATTACAAATCCTCTTCTTCAGGTGGCAGGTTCGATTCCTGGTCACTCGTATCCTTAGCCAGTGCCTTTTTCTTTTTTTCTTTCTATCGAAACAGTGAAGAATCGACGTAGCAGAGCAAGTCTTCAGATTTTAAAA_-_ATGGCGAAGGATTCAACTGCCAGTCTTAAAGGAGACGCACATTCACCTATATCTGTTTTAGAAGATGAGGGAATGTCTAGAAGTGAAGCGCCAGTTGTTGATATAGAGGATAATGATTTATCAATTCATGGCGAAGCATTGGAAGTTCCAGAGGATATGGCCATGGAGGAGAAACGCCTAGAAGAAGAACGAGCTGAGCGAGAAAAGAAGGAAATGGAAAAACAACTGAGCAATGGGAGTTCACAGATGGATCATTTATTATTTAACAAATTGGATGAGCTTCTTAGCCAGACTCAACTTTATTCAGAGTTTCTGCTTGAGAAGATGGATGACATCACATTTATTCCAAGTGAGAATGGCAATGCAAAAGCAAGTGCGGTGAAAAAAAGTGGTAGGGGTCGAAAGCGTAAGATGGTGACTAATAATGCAGACTCTTATCAGACAAAGAAAAAGTCAAAAAATGCTATCAATGCTATGACTGAGAATTGCATAGGAGACACCCCAGTTCAAACTTCTGATAATTTAACAGACGAGGAGAGGAACTGGAAAGAGCAGATGGAACTTGTTCCTCTATTGATCGGGGGAAGGTTAAAGTCCTATCAAATTAAGGGTGTAAAGTGGTTGATTTCTCTCTGGCAAAATGGGCTCAATGGAATCCTGGCAGATCAAATGGGTCTAGGAAAGACAGTGCAGACTATTGGTCTCCTTGCTCATCTCAAGGGGATGGGCATGCATGGGCCCTTTTTAGTAGTTGCTCCTCTTTCAACTCTCTCGAATTGGGTGAATGAAATCAATAGGTTTGTTCCAAGCATGAATGCTATAATCTATCATGGCTCCAAAATTGAGCGACAAGAGCTGAGGAAAATCCACATGCCTCCCACAGTGGGCCCAACATTCCCTGTTATTGTCACTTCTTATGAGGTTGCAATGAATGATAGCAAGGCTTTGGCTCGCTATGATTGGAAATATATAGTTGTTGATGAGGGACACCGATTAAAAAACTCCAACTGCAAATTGCTGAGGGAATTGAAAACCTTACCTGCTGAAAATAAGCTGCTTTTGACTGGAACACCCCTACAAAATAATTTGGCGGAACTTTGGTCCTTGCTGAATTTCATTTTGCCTCAAATATTCACATCACGTGAAGAGTTTGAATCTTGGTTTGATCTAGCTGGGAAACAAAGCAATGGGATGAGGCAGGAAGAAATTGAAGAGAAAAGAAGAGTTCAAGTAATTTCAAAGCTTCATTTGATCCTTCGACCATTTCTTCTCAGAAGGCTGAAAGAAGAGGTTGAGCAGTCCCTGCCCAGGAAAAAAGAGATAATTTTGTATGCAGATATGACAGAACATCAGAAGCAGATCCAAGATCATTTGGTCAACAAAACACTTGAGGTTTATTTGCACAATAAATCAGAAAATGGCACAGGCCTAAAGGGAAAGCTGAACAATTTGATGATTCAACTGCGCAAGAATTGCAACCACCCTGATCTTTTGGAGTCACAGTTCGATCAATCATTTGAATATCCACCGGTGGAGCAGTTGGTTAAGCAGTGTGGTAAATTTGGTTTGCTAGAGAGGCTATTAACACATTTGAAAGCTCAGAAACACAAGATGTTGATATTTTCTCAATGGACTAAAGTTCTTGACTTGCTGGAATACTATTTAAGTGAGAGAGGATATGAGGTTTGTCGCATTGATGGAAGTGTTAAGTTGGAAGATAGGAAAAATCAGATAAGGGATTTCAATGACCCAGATAGCAACTTTTGTATCTTTTTGCTAAGCACACGGGCTGGTGGTCTTGGAATCAATCTTACTGCTGCAGACACTTGTATTATCTATGATAGTGATTGGAATCCTCAAATGGATATGCAAGCTATGGATCGATGCCACAGGATTGGACAAACACGACCTGTACATGTTTACAGGCTTATCACAGCACACTCTGTGGAGGGTCGCATGCTTAAAGTAGCGTTTGGTAAGTTAAAGTTGGAGCACTTGGTGATTGAGAAAGGACAATTTCGTCAGGAACGGAATACCAACATGCTAGAGGAATCAGATCTACTTGCTTTGATCCAGCAAGAAAAAGATGAAGAGGAGGAACTCATTGAGTGTGAAATTAGTGAATCAAATCTTGTCAGGCTGATGGACCGTTCTGATATGCTAAACGATTCAGCTGAACATGCAAGTGCAAATGCTGATACTCTTCCTCTCAAGGGGCCTGGTTGGGAGGTAGTAGTACGCAGTGGACAAGGTGGGAGTGTGCTGTCTTCAATTGAAGGCTAG___CAAAAATTCTCTTCTGATACCAGCGACTTGAACAATAAATTATAATGGCCCTTTTGTTCTGTTTTGGTGTTATGCCCTATGGACTATAGTTGGTGTATTTTTGTAATCCCCATTAATTCTATTGATCATTTTCTCTCAGGGGACTGTCTTATCCATCTATTGTAGTTTAGTGCTCAGGCATGTCGCAATGTCTCATATAGGGATGATTTTACAAGGGATCACAGTGCATTGTTGTGGAATTTAAAGGCCAAATTAATCTCAAGCCTTTTGACAGCTCTGAAAAATGTAACATATTTTTGGCGTGTACTTGGTGGAAAGCTGGCAGCTTATTTCCTCTGTAATACACATGGTAAACTGATGTCTGTAAATTTATGTCGGTATATCCAGATGACTACGTTTAGTCTGTCAATGGAAGTTTTGATCATAATGCAATGTTTCAGGGGTTATGCCTATGGTGTTTCATGGTCCTTGTGATAAACATTCTGGTCTTAAGATGGTTTCAGGATTTCCTTTATTGGACAGTCCTGTAATCTCTGTGGTAAAGTATGGTTGAAACTGTTCTATATGTTTTAGCTGTGTTACTGATTAAGTCCTAGGTGTTTGATTGCATTATCATGTAATGGTATATAGGTGAGATATTTGTAATGACAGGTTAAATCCTTTTTAACTGG

Fln Alignment:

Contig6666___NGMRQEEIEEKRRVQVISKLHLILRPFLLRRLKEEVEQSLPRKKEIILYADMTEHQKQIQDHLVNKTLEVYLHNKSENGTGLKGKLNNLMIQLRKNCNHPDLLESQFDQSFEYPPVEQLVKQCGKFGLLERLLTHLKAQKHKMLIFSQWTKVLDLLEYYLSERGYEVCRIDGSVKLEDRKNQIRDFNDPDSNFCIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDMQAMDRCHRIGQTRPVHVYRLITAHSVEGRMLKVAFGKLKLEHLVIEKGQFRQER-NTNMLEESDLLALIQQ-XXXXXXXXXXXXXXXSNLVRLMDRSDMLNDSAEHASANADTLPLKGPGWEVVVRSGQGGSVLSSIEG*QKF
D5AD70______________NETGNEETEDKKKVQVISKLHAILRPFLLRRLKEDVEKNLPSKKEIILYARMTEDQRKIQEHLLNKSLITYLHARSEYGKAMKTRLENLMLQLRKNFNHPDLLQSQFEISYHYPPVEKLMEQCGKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLCTSHSAECRMLKVAFDKLKLERVVIEKGQFHQERTNPGFSKESELLALLQQERDEEEELVQSDEISESNLLKLLDRRDMINDSLKVGGAGTDSLPLKGPGWEIVVRGGQVGGMLSSIEGYKEY

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
1190	16		83		0.994512
1192		83	16		0.994512
1193	83		16		0.994512
1194		83	16		0.994512
1227		83		16	0.994512
1254		20		80	0.995493
1256			80	20	0.995493
1561	11		88		0.923564
1582	10		90		0.90298
1598	85	14			0.993533
1600	57			14	1.0
1601			85	14	0.993533
1630	85			14	0.993533
1660		85		14	0.993533
2004			90	10	0.90298
2005			90	10	0.90298
2193	16	83			0.994512
2195			83	16	0.994512
2200		80		20	0.995493
2377			83	16	0.994512
2379	83			16	0.994512
2464		88		11	0.923564
2465			11	88	0.923564
2484		12		87	0.992554
2528	12		87		0.992554
2529		12	87		0.992554
2531		87		12	0.992554
2532	88			11	0.923564
2626	14			85	0.993533
2627		14	85		0.993533
2629		14		85	0.993533
2630	14			85	0.993533
2639		14		85	0.993533
2701		80	20		0.995493
2751	16		83		0.994512
2955		33		66	0.997452
2958		66		33	0.997452
3017	30			70	1.0
3019	12			87	0.992554
3020	12		87		0.992554
3021	12		87		0.992554
3022	14			85	0.993533
3089			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain