SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6660

Length: 2641 nt

UniGene Fasta

>sp_v3.0_unigene6660
ATGGGGAACTCGGAGTCCAACCACACCATGATTAAAAACACTATCCTTTTGGGCACACAAATCCGCATTCAGACAGTATTTGCTCAGAGAGAAACATGTTGGGGGTTTTTCATTGCTGTTTGTTATGCACTGCAGAGTCTTTTCCAGGTTGATTGGCCCATTCTTTGTATAGAAATCTGTGAAAAGCTTGTAGAAGCTTGGCGTCTATCTTCAAGAGGTAGAGGTTTCATTTCAAGAATGCATACTTCTTCAGTGGAGTTTGGTAGACTGTACACATCATGCTGGATTGGAGTATGAAATAAGGTCGCATTCTTATTGTGCATGTTATTGCTTGAAGCCTGAAGGTAATTCATGGAAACAAAGACAAAATATTTGTGGCGGCCTGGTTTCCCTCGACTCGTTGAGATTGCTTCTTGTCACCAAAATAACAATTGATGCAGCGAGGCTTGTTTAAATTTTGAGAAGGGGTTGTAGCTATCACAAGAATCAAGAGTAAGGGAATATATTTTAGCTTTGAAAAAAGAACAGGTTTTGGAAGATGCAGATTGCATCAGAATAAAAGGAAAATAAACACAGTAAAGAAAGTGAAGCTTCATCCATTGGTGTGTACGAAAGATCAATTGCTGCTGCAATGGCATCGACTGAAAAGGCATTGCAGCAGAGTGAAGACTCGAGTACTGAAGAAAAAATGTCCATTTCACATATTGCAAAACGACCAAATTTGATAGTGGAAATACCTTCAAGAAGTCTGGATGATTCTATTCCCAGTGGCTTGAAAGTAAACTTACCACCAACTCCAGGTTCAACAAAGAGGACAAAAAGAGCCCTTATACCACGGCCAAGCTTCAAGAACAGGGCATCTACATCGGAGGGTGAAAAGACTGTTCTGCTCACCCCAATGGCTTCATCAGAATCACCACCACCTTATGAAGGAGATCGGATATGTCGTACTCAAAGATCATTTTCACTAACAAAAATGTTTGTGCCACTATCTGCGAAAAGAACATCATCCATGCCAGTCAGCCCGGATACAGATTTGTGTCTGTCAGCCCCTGAATCAGCTCATGGAGGACACATGGTTGAGACACGCGCTTCGACTAAACCAGTTGATCAAGGGAAAATTTTTCGCTCAAAATCAATGCCCTTAAATAATAAAACAACAATTTCGAGATCAGATTCTTCAGGTTCTTTTATCCGTGTGAGGCCCATTACTCCTCGTAAGACAGAAGCTCAAGCAGTCACCAGCCCTAAGGAAATTTCTGTCATAAATACTGGGACTGAAGATGATGCAGAGGACATTCCTGAAGAGGATGCAGTGTGCAGAATTTGTATGGTCGAACTTTGTGAAGGGGGTGAAACTCTTAAAATGGAATGTAGCTGCAAAGGGGAACTTGCGCTTGCACATGAAGAATGTGCAATTAAATGGTTTAGCATAAAGGGAAACAAAACTTGTGATGTCTGCAAGCAGGAAGTTCAAAATCTACCAGTGTCATTGTTAAGAGTGCAGACTGTTTCCACTGCCAATACACAGCCTCAGCATGTGGAGGTACAAAGATACAGGCTGTGGCAGGATGTACCAGTTCTTGTCATGATCAGTATGCTGGCATATTTCTGTTTTCTTGAACAGCTTCTGGTTAGCAAAATGGCTTCTGCTGCTCTTGCTGTTGCTTTACCGTTTGCATGCATATTGGGCCTCCTCGCATCAATCACATCATCGACCATGGTTGACAAACGGTATATTTGGGTATATGCTTCAGTTCAATTTGCACTCGTACTCCTCTTTGCGCATGTGTTCTACTCAGTGCTCCATGTGGAGCCTGTTCTGGCAGTACTCCTTTCATCATTTGCTGGCTTTGGGATTGCAATGAGTGGAAATTCGTTACTTCTGGAATACTTAAGATGGAAAGAGAGGGTGCACAGATTGCGAAATAGGTCACGGAATACTCAGACAGCACAACCACCTGATCAGGCTAGAGGAAATACAAGCAACAATCAAACAGTTCCAAGTGAACCAATTAATGAACAACATGAACATGACATTGAAAGCTTGACTCCTGCCCAGAGTACCATGCCTGGTTCCTAAAGGACCCCTCAGATATAATGTGATTGATTCATGATCTTCTGTTTCAAGACATCAGCTTGAAAGGAAGGCTTATAATCTATTTTGAAGTTAGGAGAATAACATATTAATTAGAAAATATAGATATTATAGCTATCATGCCATGGTATATAGGTCTTGTTTAAGCTATTATATGCTGGTTGTTATAATTCTTCCTGTCCAGTGCAAGTACACATCCCTTTCAGGTTCAGAACCACTGTCTATATATGCTCACCCTTTCACACAACCTCACCTTGGGAATAAATTAGTATTTTGAGAAAACTTACAGATGGAATTAAATTCATTAGTTTCAGAGATTGCCCTTGTCACAAAAAAGTGATATACGGTTGATTCTCACTCCTCTTGATGAGTGCCTGTAGATTATCAAGCTTTAAGTGGTTACCTGCCCTAAAATGTTCTCCGTTGAACTTTTGCTAGTACCATATAAATCATTGTAGCGGGAGAGGCAGTTGTTGGTTATCTTGTATCTTTTGAAATATGTATATTAGAGTTATTTAGAACATTTAATGGTTCTTCTTGTAA

Ace file of the UniGene sp_v3.0_unigene6660

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_851231.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] dbj\|BAB08241.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED97347.1\| RING/U-box domain-containing protein [Ar	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Protein binding protein, putative	-	-	6.958e-10	-

Source	Gene names
Sma3	At3g06330; At3g09760; At5g03180; At5g60580; B1153E06.19; F11F8_35; F15A17_210; F8A24.19; GSVIVT00018834001; GSVIVT00019840001; GSVIVT00023186001; GSVIVT00024528001; MA4_106O17.32; OJ1661_C12.27; OSJNBa0023I17.10; Os02g0165000; Os06g0677300; OsI_05980; OsI

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	YrdC-like domain	IPR006070	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	3-hydroxyisobutyrate dehydrogenase	IPR011548	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DHBP synthase RibB-like alpha/beta domain	IPR017945	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60580.2	RING/U-box superfamily protein chr5:24354298-24356706 FORWARD LENGTH=494	46%
RefSeq	Arabidopsis thaliana	NP_851231.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002314269.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA07

Fln msg: your sequence is longer than subject: 484 - 241

Fln protein: MASTEKALQQSEDSSTEEKMSISHIAKRPNLIVEIPSRSLDDSIPSGLKVNLPPTPGSTKRTKRALIPRPSFKNRASTSEGEKTVLLTPMASSESPPPYEGDRICRTQRSFSLTKMFVPLSAKRTSSMPVSPDTDLCLSAPESAHGGHMVETRASTKPVDQGKIFRSKSMPLNNKTTISRSDSSGSFIRVRPITPRKTEAQAVTSPKEISVINTGTEDDAEDIPEEDAVCRICMVELCEGGETLKMECSCKGELALAHEECAIKWFSIKGNKTCDVCKQEVQNLPVSLLRVQTVSTANTQPQHVEVQRYRLWQDVPVLVMISMLAYFCFLEQLLVSKMASAALAVALPFACILGLLASITSSTMVDKRYIWVYASVQFALVLLFAHVFYSVLHVEPVLAVLLSSFAGFGIAMSGNSLLLEYLRWKERVHRLRNRSRNTQTAQPPDQARGNTSNNQTVPSEPINEQHEHDIESLTPAQSTMPGS*

Protein Length: 485

Fln nts: ATGGGGAACTCGGAGTCCAACCACACCATGATTAAAAACACTATCCTTTTGGGCACACAAATCCGCATTCAGACAGTATTTGCTCAGAGAGAAACATGTTGGGGGTTTTTCATTGCTGTTTGTTATGCACTGCAGAGTCTTTTCCAGGTTGATTGGCCCATTCTTTGTATAGAAATCTGTGAAAAGCTTGTAGAAGCTTGGCGTCTATCTTCAAGAGGTAGAGGTTTCATTTCAAGAATGCATACTTCTTCAGTGGAGTTTGGTAGACTGTACACATCATGCTGGATTGGAGTATGAAATAAGGTCGCATTCTTATTGTGCATGTTATTGCTTGAAGCCTGAAGGTAATTCATGGAAACAAAGACAAAATATTTGTGGCGGCCTGGTTTCCCTCGACTCGTTGAGATTGCTTCTTGTCACCAAAATAACAATTGATGCAGCGAGGCTTGTTTAAATTTTGAGAAGGGGTTGTAGCTATCACAAGAATCAAGAGTAAGGGAATATATTTTAGCTTTGAAAAAAGAACAGGTTTTGGAAGATGCAGATTGCATCAGAATAAAAGGAAAATAAACACAGTAAAGAAAGTGAAGCTTCATCCATTGGTGTGTACGAAAGATCAATTGCTGCTGCA_-_ATGGCATCGACTGAAAAGGCATTGCAGCAGAGTGAAGACTCGAGTACTGAAGAAAAAATGTCCATTTCACATATTGCAAAACGACCAAATTTGATAGTGGAAATACCTTCAAGAAGTCTGGATGATTCTATTCCCAGTGGCTTGAAAGTAAACTTACCACCAACTCCAGGTTCAACAAAGAGGACAAAAAGAGCCCTTATACCACGGCCAAGCTTCAAGAACAGGGCATCTACATCGGAGGGTGAAAAGACTGTTCTGCTCACCCCAATGGCTTCATCAGAATCACCACCACCTTATGAAGGAGATCGGATATGTCGTACTCAAAGATCATTTTCACTAACAAAAATGTTTGTGCCACTATCTGCGAAAAGAACATCATCCATGCCAGTCAGCCCGGATACAGATTTGTGTCTGTCAGCCCCTGAATCAGCTCATGGAGGACACATGGTTGAGACACGCGCTTCGACTAAACCAGTTGATCAAGGGAAAATTTTTCGCTCAAAATCAATGCCCTTAAATAATAAAACAACAATTTCGAGATCAGATTCTTCAGGTTCTTTTATCCGTGTGAGGCCCATTACTCCTCGTAAGACAGAAGCTCAAGCAGTCACCAGCCCTAAGGAAATTTCTGTCATAAATACTGGGACTGAAGATGATGCAGAGGACATTCCTGAAGAGGATGCAGTGTGCAGAATTTGTATGGTCGAACTTTGTGAAGGGGGTGAAACTCTTAAAATGGAATGTAGCTGCAAAGGGGAACTTGCGCTTGCACATGAAGAATGTGCAATTAAATGGTTTAGCATAAAGGGAAACAAAACTTGTGATGTCTGCAAGCAGGAAGTTCAAAATCTACCAGTGTCATTGTTAAGAGTGCAGACTGTTTCCACTGCCAATACACAGCCTCAGCATGTGGAGGTACAAAGATACAGGCTGTGGCAGGATGTACCAGTTCTTGTCATGATCAGTATGCTGGCATATTTCTGTTTTCTTGAACAGCTTCTGGTTAGCAAAATGGCTTCTGCTGCTCTTGCTGTTGCTTTACCGTTTGCATGCATATTGGGCCTCCTCGCATCAATCACATCATCGACCATGGTTGACAAACGGTATATTTGGGTATATGCTTCAGTTCAATTTGCACTCGTACTCCTCTTTGCGCATGTGTTCTACTCAGTGCTCCATGTGGAGCCTGTTCTGGCAGTACTCCTTTCATCATTTGCTGGCTTTGGGATTGCAATGAGTGGAAATTCGTTACTTCTGGAATACTTAAGATGGAAAGAGAGGGTGCACAGATTGCGAAATAGGTCACGGAATACTCAGACAGCACAACCACCTGATCAGGCTAGAGGAAATACAAGCAACAATCAAACAGTTCCAAGTGAACCAATTAATGAACAACATGAACATGACATTGAAAGCTTGACTCCTGCCCAGAGTACCATGCCTGGTTCCTAA___AGGACCCCTCAGATATAATGTGATTGATTCATGATCTTCTGTTTCAAGACATCAGCTTGAAAGGAAGGCTTATAATCTATTTTGAAGTTAGGAGAATAACATATTAATTAGAAAATATAGATATTATAGCTATCATGCCATGGTATATAGGTCTTGTTTAAGCTATTATATGCTGGTTGTTATAATTCTTCCTGTCCAGTGCAAGTACACATCCCTTTCAGGTTCAGAACCACTGTCTATATATGCTCACCCTTTCACACAACCTCACCTTGGGAATAAATTAGTATTTTGAGAAAACTTACAGATGGAATTAAATTCATTAGTTTCAGAGATTGCCCTTGTCACAAAAAAGTGATATACGGTTGATTCTCACTCCTCTTGATGAGTGCCTGTAGATTATCAAGCTTTAAGTGGTTACCTGCCCTAAAATGTTCTCCGTTGAACTTTTGCTAGTACCATATAAATCATTGTAGCGGGAGAGGCAGTTGTTGGTTATCTTGTATCTTTTGAAATATGTATATTAGAGTTATTTAGAACATTTAATGGTTCTTCTTGTAA

Fln Alignment:

Contig6660___CRICMVEL---CEGGETLKMECSCKGELALAHEECAIKWFSIKGNKTCDVCKQEVQNL
D5AA07______________CRICHLTLETNPEAGASIVLGCSCKDDLAAAHKQCAEAWFKIKGNRTCEICGSIARNV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1858	20	80			0.995493
1860			20	80	0.995493
1861			20	80	0.995493
1866	16			83	0.994512
2118			12	87	0.992554
2128		85	14		0.993533
2129	14			85	0.993533
2377	50			50	1.0
2379	25			75	0.996473
2380	25		75		0.996473
2394	66			33	0.997452
2467		88	11		0.923564
2486		12		87	0.992554
2496	12			87	0.992554
2605	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain