SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6652

Length: 3647 nt

UniGene Fasta

>sp_v3.0_unigene6652
CCTTAGAGGTCGGAGGATCGAAGCGAGAAACAGCAGACACAGATATATTTATATTTTTGATAGAGCTGTAAATAGGCCGGATTGATCGCCTGGTAATATTCGACATGAAAAGCCTGCTGAGAAAATTCCACAAAGGAGGGAACAGCGATGCCGGCCGATCGTCTAACCAAACGGGAGCTTCGTCGTCTTCGTCTCCCTCACTGTCCGATGGAACTGATCACAGTGCAGCATGGAGCAATGCGACCACTTCTCCCTCGAGGGAGGGGGCTAACGACCTTTCTTCCTCCCGAGGTAGGACAGCAGGAGGAGGGGGAGGCAGGGTTACTACTAGTACGACAAATAATAATAACGGCGAAGACGAGCAGCAGGGAGAGGATTATTCTTTTCTGGAAGAGGAGTTTCAGGTGCAGTTGGCTTTAGCTATCAGTGCATCGAACACTGATGTTAGAGACAATTCAGAGTCGGAGCAGATTAAAGCTGCGCAGAGGTTAAGCCTTGGCCGTGCACTGACCCGGGTTCGATGTACGGACTACGACGCAGAGTCGCTTTCTCGGCGTTATTGGGATTATAATAGTTCTTGATTACGAGGAAAGAATTCTGGATGGATTTTATGATGTTTATGGTGGTTCGTATGACCTTAGTTCTCAAGACAAGTTGCCTTCTCTTGCTGAACTTCAACAGATACCTGTCTCAAATAATCTAGGCTATGAAGTTGTCCTAGTCAATAGAGCAATTGATCCTGCATTAGAACAGCTTGAACAAGCTGCTCTTTGCCTTGCACTAGATTCTGGAACTACTGAGCCTGGTCCAGTGAATAGTGGCCTAGCACAAAAGGTTGCGGACATTGTTGCAAATCATATGGGTGGGCCAGTTAGTGATGCTAATGACATGCTAGCACGGTGGACAATGACAAGTGATGAATTGCGATTTTCTTCAAATAATGTTGTACTTCTTCTTGGTTGCTTGCAGACAGGGTTGTCGCGTCATCGGGCTCTGTTATTTAAGGTGTTAGCAGATCATGTTGGTATACCTTGCAGACTAGTGAAGGGGAGCCACTATACCGGAATTGACGGAGGAGCGGTAAACATAATTAAGCTAGATTTTGAAAGGGAATTTATAATTGATCTAATGGGAGCCCCAGGGACTCTTATTCCTGCTGAACTTCCAAGTATGGATTCTGCTCAAAATGTGGAGATGAATAGCATGAACTTTGGTCAGCAGATTCCTCTACGGCCAGACCATGATTTGTTGTCTTTTCAAGATATGGATTTTGGCCAGCCTGCAGAAAGAAGATCACCTCAAAAGGATTCAAATCCTGAACAGAAGTCCCAAGACGTTTTAGATGGTGGTTTTGTAGCTGCTCCTTCAGTTATGTTGGTTGACATTAACTCACACCAAAATGTTGGAGAAAAGAAAGTTATGAAACAGAACAAGTTCCCTGGGAAAAGAAACGAGTTTCAAAGACGGCGGGAAAATCTCAACCCAGGACTTGGACGACCACCACTTCCCATCATGCGGAAGAATCCTTTTATATGCAATGATGTTTTAGGGGAATGTGATCCTATAGATGGAATAGGACTGAGGAGAGTACCGGAGACTAGGGGTTTTAATATGCCTCCTTTACTAGAACCATCTGTTTCACGATCTCAACATGTTTCCCATGCAGCCGCTTAAAATGTACCAAGCAGATGGCATCCTAACAATGCAAACTGCTTCATACACTTTCGTTCCTAATATGAAAGGCCTCCCTGCTTCACCAGTGGTTGCTACTACTACTGTAGCACCAGGTAAATGTAGGGAGTCCCCAGTTGATTTTCCTATGGCTGCTGCAACAGATGCATCTACACATATATGCAATGAAAACCAAAAGAAAATGGAAATAAATGATCTGTCTGCACAAGATATAGTTGGCAGGGAAGATTATTATAATAACATAATAAGAAAGGAATCGAAGGACTGCAACAAGATGATTTATGATAAACGTGGATATCAACAATGCAATGATGAAAGGTTAGCTTGTGTGAGGGGAACAGAAGATGAACAAAGTCCAAATCTTCCAACTTCCGTTCGTCCTGCTAGACTGGACACAGTATTGGATGATGTTGCTGAATGTGAGATCCCATGGGAAGATCTTGTAATTGGTGAACGGATTGGATTGGGCTCCTATGGAGAAGTTTATCGTGCAGAGTGGAATGGCACAGAAGTTGCCGTGAAGAAGTTTTTGGATCAAGATTTCTCAGGGGATGCGCTTGAAGAGTTCAGAAGAGAAGTACGAATTATGCGAAGATTGCGTCATCCGAATGTTGTTCTTTTTATGGGTGCTGTTACTCGTCCACCAAATCTTTCTATTGTGACAGAGTTTCTTCCAAGGGGAAGCTTATATAGATTGATCCACCGGCCCAACATTCATATAGATGAAAAGCGACGCATAAGAATGGCTCTTGATGTTGCTAAGGGGATGAATTGTTTGCATAGTAGCATCCCTACAATAGTTCATCGAGACCTGAAGTCTCCAAACCTTCTTGTCGATAAAAATTGGGCAGTTAAGGTTTGTGACTTTGGCTTGTCACGTCTGAAGCACAATACGTTCCTATCTTCCAAATCCACTGCTGGAACGCCAGAATGGATGGCACCCGAAGTTCTTCGGAATGAACCATCAAATGAAAAATGTGATGTCTATAGCTTTGGTATAATATTATGGGAATTGGCTACACTGCGAATGCCATGGAGTGGGATGAATCCTATGCAGGTAGTTGGTGCTGTTGGTTTCCAGAATCGACGCCTTGATATTCCCAAAGATTTAGATCCATTGGTTGCAAGGATAATCAGGGAATGTTGGCAAAGCGATCCAAGTTTACGCCCTTCATTCGCACAGCTTATGGCTGCTCTCAAGCCATTGCAGAGGCTTGTTATTCCACCTCATTTAGATATACATTGTCCTGTATCACCACAAGAGCAAATTGTAAATGCTAATTGCACACCTTGACATAAGCTGAATATACGTGAGAATTTCCCCATCAATTGTTGTCGTATCCATGGACCTAGAGGGGTTTCCTCTATTTGTATATTTCAACTTGAGCTATAGTTCGTATTTATTTATGCCTGATGGCTAGTGCAAAGCTACAGCTTCCGAGATGAGATTAAAAAAAATGTGTAAAGCGTTTTGTATCTGATGGCGGAAAGAAAAAACAAAATGCCCCACTTGGAGATCTAGAACTTTCAGATTCACACATTCCACTTTGGGCAAATCACATCAGCGTGAAACCTTTTGTCTATTTGTAAAGGTGGTGTAAGCCATGTTTGTTCGGCTAGGAGCTTTACAGAATTGATTCGTATGAGTTTCCACGATTTGCTTCAATGAAAGGTCTCCTTAAAGATGGGCATTTTAAAACTGGCTGCGATGGTTTGTGCTAGAAAATCATATTAAACCATCAGTTCATTTGGGATAAACGTGACTAGGTCACTGCATTGTTTATTTCCTGCATAAAAAACACGCATTGAGAAGGGCATTTTTGTGTAGAAACCTCCACCTCAGATGGCTCATTTAATATGAATTATCCGCAATTTTTCACAACTGCTGTTCGATTATTACAAACCATGCAGCCTCGAAACAGATGAGAAAAATCATCATTATATTGATGCTTATA

Ace file of the UniGene sp_v3.0_unigene6652

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitogen-activated protein kinase [Medicago sativa]	-	-	0.0	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Map3k delta-1 protein kinase, putative	-	-	2.631e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	4.352e-11	-

Source	Gene names
Sma3	AT4g23050; AT4g24480; AT4g35780; AT5G03730; At1g18160; At1g67890; At1g73660; At2g17700; At2g31010; At2g42630; At3g06620; At3g06630; At3g06640; At3g58640; At4g23050; At4g24480; At4g35780; At5g03730; At5g11850; At5g49470; B1131G07.13; CHLREDRAFT_102541; CHL

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	actin filament binding	GO:0051015	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000173	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3		IPR015706	-	-
Sma3		IPR015783	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Alkaline phosphatase, active site	IPR018299	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08720.1	EDR1, ATEDR1 Protein kinase superfamily protein chr1:2774089-2779077 FORWARD LENGTH=933	77%
RefSeq	Arabidopsis thaliana	NP_563824.1	protein kinase domain-containing protein [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002319612.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: your sequence is longer than subject: 445 - 319

Fln protein: MFPMQPLKMYQADGILTMQTASYTFVPNMKGLPASPVVATTTVAPGKCRESPVDFPMAAATDASTHICNENQKKMEINDLSAQDIVGREDYYNNIIRKESKDCNKMIYDKRGYQQCNDERLACVRGTEDEQSPNLPTSVRPARLDTVLDDVAECEIPWEDLVIGERIGLGSYGEVYRAEWNGTEVAVKKFLDQDFSGDALEEFRREVRIMRRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNIHIDEKRRIRMALDVAKGMNCLHSSIPTIVHRDLKSPNLLVDKNWAVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRMPWSGMNPMQVVGAVGFQNRRLDIPKDLDPLVARIIRECWQSDPSLRPSFAQLMAALKPLQRLVIPPHLDIHCPVSPQEQIVNANCTP*

Protein Length: 446

Fln nts: CCTTAGAGGTCGGAGGATCGAAGCGAGAAACAGCAGACACAGATATATTTATATTTTTGATAGAGCTGTAAATAGGCCGGATTGATCGCCTGGTAATATTCGACATGAAAAGCCTGCTGAGAAAATTCCACAAAGGAGGGAACAGCGATGCCGGCCGATCGTCTAACCAAACGGGAGCTTCGTCGTCTTCGTCTCCCTCACTGTCCGATGGAACTGATCACAGTGCAGCATGGAGCAATGCGACCACTTCTCCCTCGAGGGAGGGGGCTAACGACCTTTCTTCCTCCCGAGGTAGGACAGCAGGAGGAGGGGGAGGCAGGGTTACTACTAGTACGACAAATAATAATAACGGCGAAGACGAGCAGCAGGGAGAGGATTATTCTTTTCTGGAAGAGGAGTTTCAGGTGCAGTTGGCTTTAGCTATCAGTGCATCGAACACTGATGTTAGAGACAATTCAGAGTCGGAGCAGATTAAAGCTGCGCAGAGGTTAAGCCTTGGCCGTGCACTGACCCGGGTTCGATGTACGGACTACGACGCAGAGTCGCTTTCTCGGCGTTATTGGGATTATAATAGTTCTTGATTACGAGGAAAGAATTCTGGATGGATTTTATGATGTTTATGGTGGTTCGTATGACCTTAGTTCTCAAGACAAGTTGCCTTCTCTTGCTGAACTTCAACAGATACCTGTCTCAAATAATCTAGGCTATGAAGTTGTCCTAGTCAATAGAGCAATTGATCCTGCATTAGAACAGCTTGAACAAGCTGCTCTTTGCCTTGCACTAGATTCTGGAACTACTGAGCCTGGTCCAGTGAATAGTGGCCTAGCACAAAAGGTTGCGGACATTGTTGCAAATCATATGGGTGGGCCAGTTAGTGATGCTAATGACATGCTAGCACGGTGGACAATGACAAGTGATGAATTGCGATTTTCTTCAAATAATGTTGTACTTCTTCTTGGTTGCTTGCAGACAGGGTTGTCGCGTCATCGGGCTCTGTTATTTAAGGTGTTAGCAGATCATGTTGGTATACCTTGCAGACTAGTGAAGGGGAGCCACTATACCGGAATTGACGGAGGAGCGGTAAACATAATTAAGCTAGATTTTGAAAGGGAATTTATAATTGATCTAATGGGAGCCCCAGGGACTCTTATTCCTGCTGAACTTCCAAGTATGGATTCTGCTCAAAATGTGGAGATGAATAGCATGAACTTTGGTCAGCAGATTCCTCTACGGCCAGACCATGATTTGTTGTCTTTTCAAGATATGGATTTTGGCCAGCCTGCAGAAAGAAGATCACCTCAAAAGGATTCAAATCCTGAACAGAAGTCCCAAGACGTTTTAGATGGTGGTTTTGTAGCTGCTCCTTCAGTTATGTTGGTTGACATTAACTCACACCAAAATGTTGGAGAAAAGAAAGTTATGAAACAGAACAAGTTCCCTGGGAAAAGAAACGAGTTTCAAAGACGGCGGGAAAATCTCAACCCAGGACTTGGACGACCACCACTTCCCATCATGCGGAAGAATCCTTTTATATGCAATGATGTTTTAGGGGAATGTGATCCTATAGATGGAATAGGACTGAGGAGAGTACCGGAGACTAGGGGTTTTAATATGCCTCCTTTACTAGAACCATCTGTTTCACGATCTCAAC_-_ATGTTTCCCATGCAGCCGCTTAAAATGTACCAAGCAGATGGCATCCTAACAATGCAAACTGCTTCATACACTTTCGTTCCTAATATGAAAGGCCTCCCTGCTTCACCAGTGGTTGCTACTACTACTGTAGCACCAGGTAAATGTAGGGAGTCCCCAGTTGATTTTCCTATGGCTGCTGCAACAGATGCATCTACACATATATGCAATGAAAACCAAAAGAAAATGGAAATAAATGATCTGTCTGCACAAGATATAGTTGGCAGGGAAGATTATTATAATAACATAATAAGAAAGGAATCGAAGGACTGCAACAAGATGATTTATGATAAACGTGGATATCAACAATGCAATGATGAAAGGTTAGCTTGTGTGAGGGGAACAGAAGATGAACAAAGTCCAAATCTTCCAACTTCCGTTCGTCCTGCTAGACTGGACACAGTATTGGATGATGTTGCTGAATGTGAGATCCCATGGGAAGATCTTGTAATTGGTGAACGGATTGGATTGGGCTCCTATGGAGAAGTTTATCGTGCAGAGTGGAATGGCACAGAAGTTGCCGTGAAGAAGTTTTTGGATCAAGATTTCTCAGGGGATGCGCTTGAAGAGTTCAGAAGAGAAGTACGAATTATGCGAAGATTGCGTCATCCGAATGTTGTTCTTTTTATGGGTGCTGTTACTCGTCCACCAAATCTTTCTATTGTGACAGAGTTTCTTCCAAGGGGAAGCTTATATAGATTGATCCACCGGCCCAACATTCATATAGATGAAAAGCGACGCATAAGAATGGCTCTTGATGTTGCTAAGGGGATGAATTGTTTGCATAGTAGCATCCCTACAATAGTTCATCGAGACCTGAAGTCTCCAAACCTTCTTGTCGATAAAAATTGGGCAGTTAAGGTTTGTGACTTTGGCTTGTCACGTCTGAAGCACAATACGTTCCTATCTTCCAAATCCACTGCTGGAACGCCAGAATGGATGGCACCCGAAGTTCTTCGGAATGAACCATCAAATGAAAAATGTGATGTCTATAGCTTTGGTATAATATTATGGGAATTGGCTACACTGCGAATGCCATGGAGTGGGATGAATCCTATGCAGGTAGTTGGTGCTGTTGGTTTCCAGAATCGACGCCTTGATATTCCCAAAGATTTAGATCCATTGGTTGCAAGGATAATCAGGGAATGTTGGCAAAGCGATCCAAGTTTACGCCCTTCATTCGCACAGCTTATGGCTGCTCTCAAGCCATTGCAGAGGCTTGTTATTCCACCTCATTTAGATATACATTGTCCTGTATCACCACAAGAGCAAATTGTAAATGCTAATTGCACACCTTGA___CATAAGCTGAATATACGTGAGAATTTCCCCATCAATTGTTGTCGTATCCATGGACCTAGAGGGGTTTCCTCTATTTGTATATTTCAACTTGAGCTATAGTTCGTATTTATTTATGCCTGATGGCTAGTGCAAAGCTACAGCTTCCGAGATGAGATTAAAAAAAATGTGTAAAGCGTTTTGTATCTGATGGCGGAAAGAAAAAACAAAATGCCCCACTTGGAGATCTAGAACTTTCAGATTCACACATTCCACTTTGGGCAAATCACATCAGCGTGAAACCTTTTGTCTATTTGTAAAGGTGGTGTAAGCCATGTTTGTTCGGCTAGGAGCTTTACAGAATTGATTCGTATGAGTTTCCACGATTTGCTTCAATGAAAGGTCTCCTTAAAGATGGGCATTTTAAAACTGGCTGCGATGGTTTGTGCTAGAAAATCATATTAAACCATCAGTTCATTTGGGATAAACGTGACTAGGTCACTGCATTGTTTATTTCCTGCATAAAAAACACGCATTGAGAAGGGCATTTTTGTGTAGAAACCTCCACCTCAGATGGCTCATTTAATATGAATTATCCGCAATTTTTCACAACTGCTGTTCGATTATTACAAACCATGCAGCCTCGAAACAGATGAGAAAAATCATCATTATATTGATGCTTATA

Fln Alignment:

Contig6652___EQSPNLPTSVRPARLDTVLDDVAECEIPWEDLVIGERIGLGSYGEVYRAEWNGTEVAVKKFLDQDFSGDALEEFRREVRIMRRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNIH--IDEKRRIRMALDVAKGMNCLHSSIPTIVHRDLKSPNLLVDKNWAVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRMPWSGMNPMQVVGAVGFQNRRLDIPKDLDPLVARIIRECWQSDPSLRPSFAQLMAALKPLQRLVIP
D5A8V0______________DETDNLLSTKANLELSLSMDGL---EIPWSDLVLKERIGAGSFGTVHHADWHGSDVAVKILIEQDFHEERLKEFLREVAIMKRLRHPNVVLFMGAVLSRPNLSIVTEYLPRGSLYRLIHRPGTREILDERRRLRMALDVAKGMNHLHRLNPPIVHRDLKSPNLLVDKTWTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELITLQQPWSGLNAAQVVGAVGFQNRRLQIPKDVKPDIAAIIEACWANDSRKRPSFASIMELLKPLVKPPTP

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
916			75	25	0.996473
988		83	16		0.994512
1062		83		16	0.994512
1347	25		75		0.996473
2131	75		25		0.996473
2359	87	12			0.992554
2394		25		75	1.0
2612	10		90		0.90298
2846	88			11	0.923564
2848		88	11		0.923564
2927			11	88	0.923564
2928			11	88	0.923564
2929	88		11		0.923564
2981	84		15		0.999986
3089		12		87	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain