SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6634

Length: 2232 nt

UniGene Fasta

>sp_v3.0_unigene6634
CGTCGTGACCTCGGCGTCACCAAGGTTCTCTTTCATTTTCTGCATGTGATTCCTTTCGGTTCCATTCCATTCATCCAAACACAGTTTTGTACAGTAGCCCAGATATGGGATCATGTATAGTCTTGGTGTCCAGATGCTTAGTTTGCTTATGGGTATCTTTGCATTTTATGCTGCCAACAGTAGTCACAGTAGTAGAAGGCGGCGGCCTGGGAGTGAACTGGGGGACCTTGTCCTCCCATAGACTATCACCGCCGATTGTTGTGAATATGCTGAAGGCCAACAATATCAGTAAAGTAAAGATATTTGATGCAGACCCCAAAGTATTGCAGGCTCTCACTGGCAGCAGGATACATGTCATGGTGGGTATTCCCAACGAGATGTTGCACACCCTAAGCAGGTCCAAAGTAGCTGCAAAGAGTTGGGTCCATGACAATGTAACCAGATATGTCTTCAAGGGTGGTGTTGATATCAGGTATGTTGCTGTGGGAAATGAACCATTTCTTATGAGTTACAATGGACGTTTTCAGGCATTTGTACTCCCCACAGTGGTTAACATACAAGAGGCCTTGGAAAAGGCAAACCTTGCCAGTCAAATAAAAGTTGTGGTTCCCTGCAATGCTGATGTCTATCAGTCTAAGTTGCCATCAAAAGGAATCTTCAGGCCTGACGTGAATAAAACTATGCAGCAGCTTGCTTCTTTTCTAAAAAACAATGAATCTCCCTTTGTGGTCAATATTTCTCCCTTCTTAAATCTTTATAAAAATAAAAATTATTCAGCAGATTATGCCTTTTTTGAAAATAAGGCTCATCCACTGGTTGATGGGAAGAATGTTTACAACAATTACTTTGATGGAAACCTGGATACGCTTGAATCAGCCTTGAAAAAAATTGGCTTTGGACAGATGCCAATTGTTGTTGGACAGGTTGGATGGCCAACAGATGGGGGATTCAATGCAACTGTCAGCAATGCAAAAATATTCATTCAAGGACTGGTAAACCACGCCATAAGCAACAAGGGCACCCCGCTTAGGCCTGGAAATCCCCCAATAGAAACATATATTTTTAGTCTGCTAGATGAGGACCAAAGGAGCATTCTGCATGGAAATTTTGAAAGACATTGGGGCATATTTACAATTGATGGTCAGGTTAAATATGAGATTGACAGAGGGCAAGATGCGGGTCTGGTGAATGCAGAAAATGTTCGATACCTCTCTTCAAGGTGGTGTGTTGCAAATGATAACCATGATCTTACAAATGTGTCAAGGCATGTGGAACAGGCCTGCTCAACTTCAGATTGTACAGCCCTCTTTTCTGGAGGTTCTTGCAATCATATTGGGTCACCAGGAAATATCTCATATGCTTTTAACAGCTACTATCAATTTCACAATCAATCAGTTGATAGCTGCAATTTTGATGGTCTTGGGATGATAACAATTGTAGACCCATCAATAGGAGATTGCAGGTTTTTGGTTGCAACTAGTGACTCATATGCTTCTAGCCTGTACAGCAGTGTAAAGAAGCATTGGATAGTTCAATGGACATTTCTATCATGTACTCTGACTTTTCTTGGCATTATGTTCTAGAATGTTGTACCTGATAGTCGTCTATCTATTATTTTGTCTCTAACTACAGGGTTTCTGATATCTTGTTCTATTTATTCATGGCCAAAGGTAAAACAGTGCAGGTTGTGATTTGCACCTATTTTGCCGAACAGCTACTCAATGGCCAAATGTATTGGACTGAACACTTTAAACTCCTAGGGCATTACCCAAGGACCAACATCATATGGTGTTGCTTGTAGCCTTGTTGCATGGGTTCTAGTAAATTCTTAAAGGTGATCTCAGTGTCCACAGGCCTACAATTTGGTTAGTATGTGGTTGAGTCTTCTTGTTATTCTATTTTTGTATGTTATACAGAGAAATCGTGGGTTTACAAGTCTGTCTCCTGCAGATGAGAACAGATGATGTGTATATCTTTTTCCTGATAGCCAGTCTGTGGTACATTTGGAAGTCATGCTACAAAATTACAAAGTGGAGGGGATTTGGGCATAACCTTTACTGGAAGCCAAAGGTGGAATAAGCAGTGTAAATTCCCAGAGGTTGAGTACAATTATGAGAGAAATTATCTTTAATGAATTGCACGATACAGAAATTCAAATATGTTGTTTAAACAACTGATTTAAGCAATATTTTGCATGAATAAATATAAAATTTGTAGATATTCTCTAACTTT

Ace file of the UniGene sp_v3.0_unigene6634

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative glycosyl hydrolase [Oryza sativa Japonica Group] dbj\|BAD03265.1\| putative glycosyl hydrolase [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Glucan endo-1,3-beta-glucosidase 5	-	-	3.01e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	1.603e-24	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.603e-24	%

Source	Gene names
Sma3	31.t00002; AT4g17180; At1g64760; At2g19440; At3g04010; At3g24330; At4g17180; At4g17180/dl4625w; At4g31140; At5g18220; At5g20870; At5g58090; At5g58480; At5g64790; F13O11.7; F6E21.60; GSVIVT00013097001; GSVIVT00016351001; GSVIVT00016795001; GSVIVT0001937200

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17180.1	O-Glycosyl hydrolases family 17 protein chr4:9646541-9648045 FORWARD LENGTH=475	59%
RefSeq	Arabidopsis thaliana	NP_193451.2	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002329964.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F1

Fln msg: your sequence is longer than subject: 493 - 301

Fln protein: MGSCIVLVSRCLVCLWVSLHFMLPTVVTVVEGGGLGVNWGTLSSHRLSPPIVVNMLKANNISKVKIFDADPKVLQALTGSRIHVMVGIPNEMLHTLSRSKVAAKSWVHDNVTRYVFKGGVDIRYVAVGNEPFLMSYNGRFQAFVLPTVVNIQEALEKANLASQIKVVVPCNADVYQSKLPSKGIFRPDVNKTMQQLASFLKNNESPFVVNISPFLNLYKNKNYSADYAFFENKAHPLVDGKNVYNNYFDGNLDTLESALKKIGFGQMPIVVGQVGWPTDGGFNATVSNAKIFIQGLVNHAISNKGTPLRPGNPPIETYIFSLLDEDQRSILHGNFERHWGIFTIDGQVKYEIDRGQDAGLVNAENVRYLSSRWCVANDNHDLTNVSRHVEQACSTSDCTALFSGGSCNHIGSPGNISYAFNSYYQFHNQSVDSCNFDGLGMITIVDPSIGDCRFLVATSDSYASSLYSSVKKHWIVQWTFLSCTLTFLGIMF*

Protein Length: 494

Fln nts: CGTCGTGACCTCGGCGTCACCAAGGTTCTCTTTCATTTTCTGCATGTGATTCCTTTCGGTTCCATTCCATTCATCCAAACACAGTTTTGTACAGTAGCCCAGAT_-_ATGGGATCATGTATAGTCTTGGTGTCCAGATGCTTAGTTTGCTTATGGGTATCTTTGCATTTTATGCTGCCAACAGTAGTCACAGTAGTAGAAGGCGGCGGCCTGGGAGTGAACTGGGGGACCTTGTCCTCCCATAGACTATCACCGCCGATTGTTGTGAATATGCTGAAGGCCAACAATATCAGTAAAGTAAAGATATTTGATGCAGACCCCAAAGTATTGCAGGCTCTCACTGGCAGCAGGATACATGTCATGGTGGGTATTCCCAACGAGATGTTGCACACCCTAAGCAGGTCCAAAGTAGCTGCAAAGAGTTGGGTCCATGACAATGTAACCAGATATGTCTTCAAGGGTGGTGTTGATATCAGGTATGTTGCTGTGGGAAATGAACCATTTCTTATGAGTTACAATGGACGTTTTCAGGCATTTGTACTCCCCACAGTGGTTAACATACAAGAGGCCTTGGAAAAGGCAAACCTTGCCAGTCAAATAAAAGTTGTGGTTCCCTGCAATGCTGATGTCTATCAGTCTAAGTTGCCATCAAAAGGAATCTTCAGGCCTGACGTGAATAAAACTATGCAGCAGCTTGCTTCTTTTCTAAAAAACAATGAATCTCCCTTTGTGGTCAATATTTCTCCCTTCTTAAATCTTTATAAAAATAAAAATTATTCAGCAGATTATGCCTTTTTTGAAAATAAGGCTCATCCACTGGTTGATGGGAAGAATGTTTACAACAATTACTTTGATGGAAACCTGGATACGCTTGAATCAGCCTTGAAAAAAATTGGCTTTGGACAGATGCCAATTGTTGTTGGACAGGTTGGATGGCCAACAGATGGGGGATTCAATGCAACTGTCAGCAATGCAAAAATATTCATTCAAGGACTGGTAAACCACGCCATAAGCAACAAGGGCACCCCGCTTAGGCCTGGAAATCCCCCAATAGAAACATATATTTTTAGTCTGCTAGATGAGGACCAAAGGAGCATTCTGCATGGAAATTTTGAAAGACATTGGGGCATATTTACAATTGATGGTCAGGTTAAATATGAGATTGACAGAGGGCAAGATGCGGGTCTGGTGAATGCAGAAAATGTTCGATACCTCTCTTCAAGGTGGTGTGTTGCAAATGATAACCATGATCTTACAAATGTGTCAAGGCATGTGGAACAGGCCTGCTCAACTTCAGATTGTACAGCCCTCTTTTCTGGAGGTTCTTGCAATCATATTGGGTCACCAGGAAATATCTCATATGCTTTTAACAGCTACTATCAATTTCACAATCAATCAGTTGATAGCTGCAATTTTGATGGTCTTGGGATGATAACAATTGTAGACCCATCAATAGGAGATTGCAGGTTTTTGGTTGCAACTAGTGACTCATATGCTTCTAGCCTGTACAGCAGTGTAAAGAAGCATTGGATAGTTCAATGGACATTTCTATCATGTACTCTGACTTTTCTTGGCATTATGTTCTAG___AATGTTGTACCTGATAGTCGTCTATCTATTATTTTGTCTCTAACTACAGGGTTTCTGATATCTTGTTCTATTTATTCATGGCCAAAGGTAAAACAGTGCAGGTTGTGATTTGCACCTATTTTGCCGAACAGCTACTCAATGGCCAAATGTATTGGACTGAACACTTTAAACTCCTAGGGCATTACCCAAGGACCAACATCATATGGTGTTGCTTGTAGCCTTGTTGCATGGGTTCTAGTAAATTCTTAAAGGTGATCTCAGTGTCCACAGGCCTACAATTTGGTTAGTATGTGGTTGAGTCTTCTTGTTATTCTATTTTTGTATGTTATACAGAGAAATCGTGGGTTTACAAGTCTGTCTCCTGCAGATGAGAACAGATGATGTGTATATCTTTTTCCTGATAGCCAGTCTGTGGTACATTTGGAAGTCATGCTACAAAATTACAAAGTGGAGGGGATTTGGGCATAACCTTTACTGGAAGCCAAAGGTGGAATAAGCAGTGTAAATTCCCAGAGGTTGAGTACAATTATGAGAGAAATTATCTTTAATGAATTGCACGATACAGAAATTCAAATATGTTGTTTAAACAACTGATTTAAGCAATATTTTGCATGAATAAATATAAAATTTGTAGATATTCTCTAACTTT

Fln Alignment:

Contig6634___MQQLASFLKNNESPFVVNISPFLNLYKNKNYSADYAFFENKAHPLVDGKNVYNNYFDGNLDTLESALKKIGFGQMPIVVGQVGWPTDGGFNATVSNAKIFIQGLVNHAISNKGTPLRPGNPPIETYIFSLLDEDQRSILHGNFERHWGIFTIDGQVKYEIDRGQDA-GLVNAENVRYLSSRWCVANDNHDLTNVSRHVEQACSTSDCTALFSGGSCNHIGSPGNISYAFNSYYQFHNQSVDSCNFDGLGMITIVDPSIGDCRFLVATXXXXXXXXXXXVKKHWIVQWTFLSCTLTFLGIMF
D5A8F1______________MQQLASFLNNNGSPFVVNISPFLNIYQNKNLSADYAFFENKAHPLVDGKNVYHNYFDGNLDTLESALKKIGFGQMPIVVGQAGWPTDGGVNATISNAKRFIQGLVNHVISNKGTPLRPGNPPIETYIFNLLDEDKKSVLHGNFERHWGIFTFDGQVRYEIDVAEGSKGLVNAENVQYLSPRWCVTNDNHDLTNVTRHVRQACSTSDCTALFSGGSCNHIGSPENISYAFNSYYQFHNQSVDSCNFDGLGMLTTVDPSIGDCRFLVATSDSYASSLYSSVMKHWIVQWTFLVCTLTFLGSTF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
468	14		85		0.993533
471	85		14		0.993533
542	12	87			0.992554
569	14	85			0.993533
614		71		28	1.0
719	66		33		0.997452
723			33	66	0.997452
1169			81	18	0.999994
1217		83		16	0.994512
1317		50		50	1.0
1385		10		90	0.90298
1395	50		50		1.0
1444		28	71		1.0
1446		71		28	1.0
1447		71		28	1.0
1458	80		20		0.995493
1505	33			66	0.997452
1697			10	90	0.90298
1698			10	90	0.90298
1705	70			30	1.0
1793	15		84		0.999986
1954	11		88		0.999952
1956		11		88	0.999952
1957		11	88		0.999952
1964	11		88		0.999952
1992	33	66			1.0
2035			80	20	0.995493
2042	20		80		0.995493
2083	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain