SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6628

Length: 1929 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6628 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana] sp\|Q9M0G7.1\|PXL2_ARATH RecName: Full=Leucine-rich repeat receptor-like protein kinase PXL2; AltName: Full=Protein PHLOEM INTERCALATED WITH XYLEM-LIKE 2; Flags: Precursor emb\|	-	-	0.0	57%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	39%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	7.589e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	9.99e-24	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	5.61e-20	-
Sma3		EC:2.7.11.3-	-	3.191e-07	-

Source	Gene names
Sma3	AT1G08590; AT1G28440; AT1G34110; AT1G75820; AT2G33170; AT3G49670; AT4G20270; AT4G28490; AT4G28650; AT4g20270; AT5G49660; AT5G61480; AT5G63930; AT5G65700; AT5G65710; At1g08590; At1g17230; At1g28440; At1g75820; At2g33170; At3g24240; At3g49670; At4g20270; At

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G28650.1	Leucine-rich repeat transmembrane protein kinase family protein chr4:14144155-14147276 REVERSE LENGTH=1013	57%
RefSeq	Arabidopsis thaliana	NP_194594.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002301848.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 484 - 998

Fln protein: AISKCEKLVALDLKNNNLSGSIPSELAVMRALAIVDLSINNLTGTIPTRFGSSASLEIFNVSYNDLSGSVPTDGMFRTATADSFAGNHGLCGGILPPCNPTDTYNVSGMSLPMAWLIIILVIIGGGLVLVAGGRFLYKRYYSCSQGLENEDSDAWPWRLTAFQRLNFTSSEILACIKDSNIIGMGSTGTVYRAEIPRGEGVVAVKKLWRSQKELGVDPSNPSFIAEVDLLGNLRHRNILRLLGYCYNDVHALLIYEYMPNGSLAEALHGKGSCGSNLLVDWVSRYNIAVGIAQGLCYLHHDCFPLVVHRDVKSNNILLDSNLDARVADFGLAKIIETQASMSMVAGSYGYIAPEYAYTLNVDEKSDIYSFGVVLMELLTGRKPVDPEFGEAVTIVEWVREKIRTKEGMVRALDSNIGARCSHVQEELILVLRIAVLCTSKLPRDRPSMRDVVTMLAEAKPRRKSSAAAKETAVFSPPPISSLL*

Protein Length: 485

Fln nts: GGCTATTAGCAAGTGTGAGAAGCTGGTGGCGCTGGACTTGAAGAACAATAATCTGAGCGGAAGTATTCCTTCTGAACTTGCAGTAATGCGCGCTCTAGCAATTGTGGATCTCTCCATCAACAATCTCACGGGCACCATTCCAACCAGATTTGGCAGCTCAGCTTCACTGGAAATTTTCAATGTCTCTTATAACGATCTCTCCGGCTCTGTTCCGACCGATGGGATGTTCAGAACAGCCACGGCTGATAGCTTTGCGGGGAATCACGGACTCTGTGGAGGAATCCTGCCCCCTTGTAACCCCACTGATACATACAATGTGTCAGGCATGAGTTTGCCAATGGCGTGGCTAATTATAATCTTGGTTATTATCGGTGGAGGCTTGGTCCTTGTAGCTGGAGGGCGGTTTCTGTACAAACGTTACTATAGCTGTAGCCAGGGCCTCGAGAACGAGGACAGCGACGCCTGGCCGTGGAGGCTGACGGCCTTCCAGAGACTCAACTTCACCAGCAGCGAAATCTTGGCTTGCATAAAGGACTCCAACATCATAGGAATGGGAAGCACCGGTACAGTTTACAGGGCCGAGATACCCCGAGGCGAGGGCGTCGTGGCTGTCAAGAAGCTCTGGAGATCGCAGAAGGAGCTCGGCGTTGACCCCTCCAATCCCTCTTTTATTGCAGAGGTCGATTTGTTGGGGAATCTAAGGCATAGGAACATACTCAGGTTGCTCGGCTACTGCTACAACGATGTCCACGCATTGTTAATCTATGAATACATGCCCAACGGGAGCCTGGCAGAGGCCTTGCACGGAAAGGGATCTTGCGGCAGCAATCTGTTGGTTGATTGGGTTTCGAGGTATAACATTGCAGTGGGTATTGCTCAGGGACTGTGTTACCTTCACCATGACTGCTTTCCTCTCGTGGTTCACAGGGATGTTAAATCCAATAACATTCTGCTCGATTCCAACCTGGATGCCCGTGTTGCAGACTTTGGGCTGGCCAAGATTATAGAGACGCAGGCATCAATGTCGATGGTAGCAGGTTCATATGGCTATATTGCTCCAGAGTACGCGTACACGTTGAATGTGGACGAGAAGAGCGACATATACAGCTTTGGTGTCGTGCTCATGGAGCTCTTGACAGGAAGAAAGCCTGTCGACCCAGAGTTTGGAGAAGCCGTGACTATTGTGGAATGGGTTAGAGAAAAAATCAGAACGAAGGAGGGCATGGTTCGGGCCCTGGATTCCAACATTGGAGCTAGGTGTAGTCACGTTCAGGAAGAATTGATATTGGTGCTGCGGATAGCGGTGCTCTGCACCAGTAAATTGCCCAGAGATAGGCCCTCCATGAGAGATGTCGTGACCATGTTGGCTGAAGCCAAGCCCAGGAGAAAAAGCAGTGCAGCTGCCAAAGAAACCGCCGTGTTCAGCCCGCCTCCCATTTCAAGTCTGCTGTGA___GTCTAAACGGTACCACGGTCCCCATGTACAGTCCCATAAAATCTCTGGAAGAAAACTCAAATCATGACGAAGGGATATTCACTGTATTAATCTTCTGTACGCAATTTGTTGAATTCATAGATGATGTATGGCTCCATTGACAACCGAACTTGTGGCGGCAAATGGTGGCATGGATTAATTCTAGGAAGAATGGAGATCCTGCTGCCCGGTGCCCGATAACTGTTATTTCTCACTGATTCCGTTAACAAAATCAACTTCTTAATAAAGATGGAAGCTGAAATCTGTAAAAGATCGTCTTTGATTTTAATTTGATTGTTTGGTGAAAATTCAGATGAAATCTCAATCCGAACACGCCAAACTGAAACTTCCCCGAGTCCGCTTCCGTTGAAAGCGCCTTTCTTCATAATTACTTTTTTCATTGTAATGTGTTTTCTTTTGACACAATGGGAAAATCTATAACCGGAGCATTAGTAATT

Fln Alignment:

Contig6628___AISKCEKLVALDLKNNNLSGSIPSELAVMRALAIVDLSINNLTGTIPTRFGSSASLEIFNVSYNDLSGSVPTD-GMFRTAT
Q19AV8______________SITKLDKVAQIELYQNLLSGPIPVAMGELKALKRFDASMNMLNGSIPAGLG-SLNLESLNLYQNDLVGEIPPGLGSFASLT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
55	33		66		1.0
1227		75		25	0.996473
1557	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain