SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6625

Length: 2154 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene6625
ATGGGTCGTGACCTGGTGTTTTAGAGGGTAGAGTGTGAAGTGCAGGCGGTAAGAGTAGCAGATCATAGCTCGTCACATAAATTGAATGGCAATGTCAATGACGATTCGCCGCATGAGGATTGCTCCTGTCGTACACTGTTATTATGCCCACCTGCACCAGCGACAGATGAGCAGCGAGTCAATAAGATGGCTGAATGAAAAGGGTCTGCTGCGAACACAAGGTCTGATTGGGGGGAAGTGGGTTGGTGCTCGCGATGGCAAGACTATACCAGTACATAATCCAGCAAACCAAGAGCTGCTTGGAGTTGTTCCCTACATGGGGGAAAGTGAGACAAAGGATGCAATTGCTTCTGCATACGAAGCTTTCCCTTCTTGGAGCAAGCTTACTGCTACTGAGAGAAGCAAAATTCTTCGAAAATGGTATGAATTACTAATGGCACACAAGGAAGATTTGGGGAAGCTTATGACATTAGAAAACGGCAAGCCTATTAAAGAAGGTTTGGGAGAGGTTGCATACGGGGCAAGTTTTGTTGAATTTTATGCCGAAGAAGCAAAACGTATATATGGGGATATAATCCCTCCTACTGTAGCTGATCGACGATTACTTGTTCTAAAACAGCCTGTAGGTGTTGTTGGCGCCATTACTCCCTGGAACTTCCCACTTGCCATGATCACACGCAAGGTTGCTCCAGCTCTTGCTTCTGGTTGTACAGTTGTGGTCAAACCATCTGAATTGACTCCTTTGACGGCATTGGCAGCTGCTGAGCTTGCACTTCAAGCAGGAGTTCCACCAGGTGTCCTGAATATTGTGATGGGAAACGCTGCTGACATTGGAGATACACTACTTGAATCTTCACAGGTGCGAAAAATCACATTCACTGGATCAACAGCGGTTGGAAAGAAGCTAATGGCAGCTGCCGCAGGAACAGTGAAAAGGGTCTCCTTGGAGCTTGGTGGGAATGCACCTTGTATAATCTTTGATGATGCAGATCCTGAGGTTGCAGTAAAAGGCACTTTGGCAGCAAAATTTCGTAACACTGGACAAACTTGCGTTTGTGTTAATAGGATATTAGTGCAAGATGGTATCTATGAAAAATTTGCAAGTCTCTTTGCCAGTGCAGTCCAGGACATGCGAGTCGGAAATGGTTTGGAGGAAGGTGTTATGCAGGGGCCCTTAATCAACAATGCTGCCGTGCAAAAGGTTGAAAAGCACATACAAGATGCTGTATCAAAGGGAGCAAAGCTATTGGTTGGGGGTAAACGGCATAGCCTTGGGTATACATTTTATGAACCGACTGTCCTTGGAGATGCAACTTCTGGCATGTTGATTTCCAGGGAGGAAGTGTTTGGACCTGTTGCACCACTTTTCCGTTTCAAGTCTGAGGACGAAGCTATTAGACTAGCAAATGACACACAATTCGGATTAGCTTCCTATTTATTTACAGAAAGCATGTCACGAGCTTGGCGTGTGGCAGAGGCTCTAGAATATGGATTGGTTGGAGTCAATGAAGGCATTATTTCCACTGAGGTTGCACCATTTGGAGGTGTCAAGGAATCTGGCCTTGGACGAGAGGGCTCAAAATATGGCATCGATGAGTATTTAGAGGTTAAATACGTATGTCTGGGAAACATGAAACACTAGCAATAGCTAGTTGCTTACATTTTTATAGATAATTAATGCTTGTATTGAAATGTGTCTTTTGTGATAACTTTGCCTCAAGGTTCCATGAAGGGATCCGGCTTACCTTTTAATCTTGTTTCTTCTAGCTACTGTTTCAGATTTTTTTTCCTTAGGTTTTGCACCATATGCTTTGACTGCACAGTTTATAAGCTTCGAGGCGAAGCCTCCACATCTGTTGTATGTTCAAAGTTGTAAGCATCTGACTTGTTTTAAACAGAAATACTAGCAAGCTAAATTTCTAAATAAGGGCTCATATTTATAATTTTATTTTGTTTAAAACATAATGGTGTTTTTGTGAATAGCTTGGGTAAGTTCAGTTGTGCATTAGTTTTCCATTAAAACACTGATAAGATGGAATGCAGACTGACTGTAAATTAATTTTTACCAAGCTTTAACATTCCGTTGGACGGAAGTTCTGGAAGGATTGTTTCTGCAGCCTCTGAAATGGATAAAAATGTTAAAGCTACTGTTAT

Ace file of the UniGene sp_v3.0_unigene6625 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Succinate-semialdehyde dehydrogenase, mitochondrial n=2 Tax=Arabidopsis RepID=SSDH_ARATH	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Sma3	Aldehyde dehydrogenase family 5 member F1	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Succinate-semialdehyde dehydrogenase (NAD(+)).	EC:1.2.1.24	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Butanoate metabolism	00650	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ALDH5F1; SSADH1; At1g79440; T8K14.14;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	succinate-semialdehyde dehydrogenase activity	GO:0004777	Molecular Function	-
Sma3	gamma-aminobutyric acid catabolic process	GO:0009450	Biological Process	-
Sma3	glutamate decarboxylation to succinate	GO:0006540	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-
Sma3	oxygen and reactive oxygen species metabolic process	GO:0006800	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79440.1	ALDH5F1, SSADH1, SSADH aldehyde dehydrogenase 5F1 chr1:29882525-29887275 REVERSE LENGTH=528	75%
RefSeq	Arabidopsis thaliana	NP_178062.1	succinate-semialdehyde dehydrogenase [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002315079.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV02

Fln msg:

Fln protein: MAMSMTIRRMRIAPVVHCYYAHLHQRQMSSESIRWLNEKGLLRTQGLIGGKWVGARDGKTIPVHNPANQELLGVVPYMGESETKDAIASAYEAFPSWSKLTATERSKILRKWYELLMAHKEDLGKLMTLENGKPIKEGLGEVAYGASFVEFYAEEAKRIYGDIIPPTVADRRLLVLKQPVGVVGAITPWNFPLAMITRKVAPALASGCTVVVKPSELTPLTALAAAELALQAGVPPGVLNIVMGNAADIGDTLLESSQVRKITFTGSTAVGKKLMAAAAGTVKRVSLELGGNAPCIIFDDADPEVAVKGTLAAKFRNTGQTCVCVNRILVQDGIYEKFASLFASAVQDMRVGNGLEEGVMQGPLINNAAVQKVEKHIQDAVSKGAKLLVGGKRHSLGYTFYEPTVLGDATSGMLISREEVFGPVAPLFRFKSEDEAIRLANDTQFGLASYLFTESMSRAWRVAEALEYGLVGVNEGIISTEVAPFGGVKESGLGREGSKYGIDEYLEVKYVCLGNMKH*

Protein Length: 520

Fln nts: ATGGGTCGTGACCTGGTGTTTTAGAGGGTAGAGTGTGAAGTGCAGGCGGTAAGAGTAGCAGATCATAGCTCGTCACATAAATTGA_-_ATGGCAATGTCAATGACGATTCGCCGCATGAGGATTGCTCCTGTCGTACACTGTTATTATGCCCACCTGCACCAGCGACAGATGAGCAGCGAGTCAATAAGATGGCTGAATGAAAAGGGTCTGCTGCGAACACAAGGTCTGATTGGGGGGAAGTGGGTTGGTGCTCGCGATGGCAAGACTATACCAGTACATAATCCAGCAAACCAAGAGCTGCTTGGAGTTGTTCCCTACATGGGGGAAAGTGAGACAAAGGATGCAATTGCTTCTGCATACGAAGCTTTCCCTTCTTGGAGCAAGCTTACTGCTACTGAGAGAAGCAAAATTCTTCGAAAATGGTATGAATTACTAATGGCACACAAGGAAGATTTGGGGAAGCTTATGACATTAGAAAACGGCAAGCCTATTAAAGAAGGTTTGGGAGAGGTTGCATACGGGGCAAGTTTTGTTGAATTTTATGCCGAAGAAGCAAAACGTATATATGGGGATATAATCCCTCCTACTGTAGCTGATCGACGATTACTTGTTCTAAAACAGCCTGTAGGTGTTGTTGGCGCCATTACTCCCTGGAACTTCCCACTTGCCATGATCACACGCAAGGTTGCTCCAGCTCTTGCTTCTGGTTGTACAGTTGTGGTCAAACCATCTGAATTGACTCCTTTGACGGCATTGGCAGCTGCTGAGCTTGCACTTCAAGCAGGAGTTCCACCAGGTGTCCTGAATATTGTGATGGGAAACGCTGCTGACATTGGAGATACACTACTTGAATCTTCACAGGTGCGAAAAATCACATTCACTGGATCAACAGCGGTTGGAAAGAAGCTAATGGCAGCTGCCGCAGGAACAGTGAAAAGGGTCTCCTTGGAGCTTGGTGGGAATGCACCTTGTATAATCTTTGATGATGCAGATCCTGAGGTTGCAGTAAAAGGCACTTTGGCAGCAAAATTTCGTAACACTGGACAAACTTGCGTTTGTGTTAATAGGATATTAGTGCAAGATGGTATCTATGAAAAATTTGCAAGTCTCTTTGCCAGTGCAGTCCAGGACATGCGAGTCGGAAATGGTTTGGAGGAAGGTGTTATGCAGGGGCCCTTAATCAACAATGCTGCCGTGCAAAAGGTTGAAAAGCACATACAAGATGCTGTATCAAAGGGAGCAAAGCTATTGGTTGGGGGTAAACGGCATAGCCTTGGGTATACATTTTATGAACCGACTGTCCTTGGAGATGCAACTTCTGGCATGTTGATTTCCAGGGAGGAAGTGTTTGGACCTGTTGCACCACTTTTCCGTTTCAAGTCTGAGGACGAAGCTATTAGACTAGCAAATGACACACAATTCGGATTAGCTTCCTATTTATTTACAGAAAGCATGTCACGAGCTTGGCGTGTGGCAGAGGCTCTAGAATATGGATTGGTTGGAGTCAATGAAGGCATTATTTCCACTGAGGTTGCACCATTTGGAGGTGTCAAGGAATCTGGCCTTGGACGAGAGGGCTCAAAATATGGCATCGATGAGTATTTAGAGGTTAAATACGTATGTCTGGGAAACATGAAACACTAG___CAATAGCTAGTTGCTTACATTTTTATAGATAATTAATGCTTGTATTGAAATGTGTCTTTTGTGATAACTTTGCCTCAAGGTTCCATGAAGGGATCCGGCTTACCTTTTAATCTTGTTTCTTCTAGCTACTGTTTCAGATTTTTTTTCCTTAGGTTTTGCACCATATGCTTTGACTGCACAGTTTATAAGCTTCGAGGCGAAGCCTCCACATCTGTTGTATGTTCAAAGTTGTAAGCATCTGACTTGTTTTAAACAGAAATACTAGCAAGCTAAATTTCTAAATAAGGGCTCATATTTATAATTTTATTTTGTTTAAAACATAATGGTGTTTTTGTGAATAGCTTGGGTAAGTTCAGTTGTGCATTAGTTTTCCATTAAAACACTGATAAGATGGAATGCAGACTGACTGTAAATTAATTTTTACCAAGCTTTAACATTCCGTTGGACGGAAGTTCTGGAAGGATTGTTTCTGCAGCCTCTGAAATGGATAAAAATGTTAAAGCTACTGTTAT

Fln Alignment:

Contig6625___QGLIGGKWVGARDGKTIPVHNPANQELLGVVPYMGESETKDAIASAYEAFP-----SWSKLTATERSKILRKWYELLMAHKEDLGKLMTLENGKPIKEGLGEVAYGASFVEFYAEEAKRIYGDIIPPTVADRRLL---VLKQPVGVVGAITPWNFPLAMITRKVAPALASGCTVVVKPSXXXXXXXXXXXXXXLQAGVPPGVLNIVMGNAADIGDTLLESSQVRKITFTGSTAVGKKLMAAAAGTVKRVSLELGGNAPCIIFDDADPEVAVKGTLAAKFRNTGQTCVCVNRILVQDGIYEKFASLFASAVQDMRVGNGLEEGVMQGPLINNAAVQKVEKHIQDAVSKGAKLLVGGK--RHSLGYTFYEPTVLGDATSGMLISREEVFGPVAPLFRFKSEDEAIRLANDTQFGLASYLFTESMSRAWRVAEALEYGLVGVNEGIISTEVAPFGGVKESGLGREGSKYGIDEYLEVKYV
A9NV02______________QLFIDGEWRAPLKGKRLPVINPTTEETIGEIPAATAEDVEIAIKAARVAFTRNRGKDWARTPGAFRAKYLRAIAAKVIERKSELAELEALDSGKPLDETAWDMDDVAGCFEFYADLAEALDSEQRAPVSLPMEAFKSHVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCTAILKPSELTSVTCLELASICKEIGLPPGVLNIVTGVGPEAGAPLPAHPDVDKVAFTGSTATGRAIMTAAAQVIKPVSLELGGKSPILVFEDVDIEKAAEWAMFGCFWTNGQICSATSRLLVQESIADEFIKKLVNWTKSIKISDPFEKGCRLGPVVSEGQYKKILNFISVAKEEGATVLCGGRHPEHLKKGYFIEPTIIGNVNPSMQIWREEVFGPVLTVMTFRTEEEAIDIANDSHYALGGAVLSNNADLCNRVSEHLQAGIIWVNCSQPCFCQAPWGGNKRSGFGRELGKWGLENYLSVKQV

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
982		28	71		1.0
989		14		85	0.993533
1199		90	10		0.90298
1200	10	90			0.90298
1207		90	10		0.90298
1224	12			87	0.992554
1225	14	85			0.993533
1227		85		14	0.993533
1230			16	83	0.994512
1240	83		16		0.994512
1293			88	11	0.923564
2057	72		27		1.0
2093	63	27	9		1.0
2099			10	90	0.90298
2108		66		33	1.0
2127	85	14			0.993533
2129		33	50		1.0
2131		16		83	0.994512
2132	20	60	20		0.99255
2133	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain