SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6616

Length: 3052 nt

UniGene Fasta

>sp_v3.0_unigene6616
ATGGGGAGAGCCCGCATGATAAAAACGGTGGCATCATCTATATAAAAGTGAAGTGGGGTTAAGCTAAACCGCTAATCGCTCGAAATTGAAAATAAACAAACGCAACGCAGGTTGGGCCTATTTAAGAGTGGTCGAATCGGCTAGGGTTTATCATTTTAGTGGAAGCTGAGAGGGCGTTCTGTTTAACCCCTACGCGGAACGAGCTGCGCGTTTCCTCTGCATTTGCTGCAAAAGCCCGTTATCACCTTTCAAGCCGAGTTTTGATTTTGACTAGATTTTTGGCAATGGACGGAGAGAAATATTCATCCGGAAAGCGTTCCTACTCGCACATTGATGCTGGGGAAGGCAATGAAAGGAGTAAAAGGCGACATTCTGACTTTGAACGGGGTTCTGCAATGCCCGGTGATAATGACACTGTTTATCGTATTCTTTGTCCTGGTAACAAGATAGGCAGTGTGATTGGGAAAGGTGGCAGTATTATAAAATCCTTGAGGCAAGAAACCCATGCCAAGATCAAAATTGCAGATTCTATCCCTGGTGTGGAAGAGAGGGTTATCATTATATTCAGCTCTCCAAAGGATCAGCGAAAGGAGCATGATGAAGAGAAGAATAGTGATGAGGAGGCTGACAATGCAGCTAAGGATGACATTGATAGGGAGCCTCTGTGTCCTGCACAGGACGCACTTTTTAAAGTACATGCAAGAATTGTCGATGGAGAGGGTGTTGCTGGTTCGGATTATGAAGAGGATGATAAGAGTCGGAATGTAACTGCTCGCCTTCTTGTGCCAACAAACCAAATTGGGTGCTTACTTGGAAAGGGTGGAAAGATAATTGAGAAAATGAGGAGTGACACTAGTGCACAAATTCGTATAATGTCCAAGGAACAGCTACCTCCCTGTGCGATGGATACTGACGAACTTGTTCAGATATCTGGAGATCCAACGGTGGTAAAAAAGGCCTTGTATGAGATTTCTGCTCGTTTGCACGAAAATCCAGCAAAACAGCGCCTTTCATATAACAGCGGTTCTCATTTTGGCAACAATCCTTATGGATCTGGTGGTCCTGCATTTTCTTCTGTAAATCTTATGCCCCAAGGAAATCCAATGTGGTCTCACCAAAATGTGGGTGCACCTATTGTTGGCATTGGTCCACCCATGCCATGGCTTGGAGGATATGGTAATGAAGCAGCTTCTGCATGGCATATGAACTCATCTGGTTTTCCCGTTCTTCCCAATTTGGGTGGGCCTTCCCGCAAGGATGGAGGTCCGGGAAAGGAGGTCACTATCAGAATCTTGTCTCCGAATGATAGGGTTGGTGGTGTAATTGGTAAGAGTGGCAGTACTATTAATCAGATAAGACAAGAATCAGGATCACGCATTAAGATAGCAGAAACAGTATCTGATTCAGAAGAAACTGAAATTGTAGTGTCGGCTTCAGAGTTTGCTGATGACCAAGTCTCGCCTACTATTGAGGCTCTACTACAACTGCAAGGCAGAACAACTGCGAGGTCTGAAAATGAAGGTCACATTACAACACGGCTCCTGGTTCCATCAAATCAGATTGGTTGTCTTATTGGCAAAGCAGGTAGCATCATATCTGAGATGCGGAAAACAAGTCGGGCTGATATTCGTATATTGTCCAAGGAAAATTTACCGAAGTGTGCTTCACAGAATGATGAACTAGTCCAGATTGCTGGGGAAGCCAATTATGCCAGAGATGCTCTTATACAAATTGCTTCGAGGCTGCGAGCAAAGGTTCTTCAAGATGGAGATGGTGCTGGTAAAGGTGGCCCCCCTGGTCTCTCATCCAAATCCAGCCTTTCAAAGGCTGACGGGGCTCCAATTTCATCCCATTATTCAGCAAGACAAGATATGTTATCCCCTGGAAGAATGTATCCTTCATCTGGTCTTGGGTTCCAAGGAACTGGTGGCAGATCATCAGCTGGGGGATATAGCAGTTTTGGAACATATCAGAGTGGAGGGAGTGGGTATGATCCCATTCAAGGATATACATCAAGTCGTACAACTGATGGCGGGTATTCTGGAGGGTTTGCGAAAAATGTATCCACAACGACTGTCGAGGTTACTATACCAAAAAACGCAGTTGGGTCAGTCCTTGGGAAGAGAGGAAGTAACATTCAAAACATTCGAGAGATATCTGGAGCAAAAGTAAAGTTGCATGATTCTGAGTCTGGTTCCTCGGATCGTGTTATTGAAATATCTGGGACACCAGAACAGACACACGCAGCAAAGAGCTTGCTTCAAGCATTTATTGCAACTGGTGGTCAAAGCCAGCCCACACGCAGTGCAGGCCGGGGTTATTAGCACGGGACTAGTTTTGATGACTGGCAGCCACGATGTATGATGCCTGGAGCCAGTCTATCATCCCATGCTGAAGCCTCAGCCCAAAACTGAAGATCTGATGAGAAGAGCCGTGGAAAGCCTATTGCCCATGCTTTGGAAGTATTAATTTAGTTGGACTAGCTTCTCAAGGAAATTTTGTTCCCTTGAGTGTTCTTTCCTTTAACTGCCAGTAGTTTTTGGAGTTTATGAACCATGTACTGTAAGGCCCAGATTCAGCATTGAAGTATTGGGAGTTTCAAGACTGAATGATCAAAAGTGGATTTTGTGTTGTCGCATATTATGGCCAATTCCTTCTCCTTAGGATTTTGGAGCCGGATCCCAGACCAAAAATCATTTTGGATTATTGTATCATTTTTTTAAAGAATTTAAGTATACTCACTAAAATGGTACGAGTAGTGAAGGTTTTTCAATAGGATTATTATAAATATGTATGCCTTCTGTATTTTGTACCCTGAAGGTTCCTGAAGGTTTTGATTATCACGTAGGCTATGTTGGAATCCCTTTTGTAGTAGTACATTTCTGTGTAGTCTGTGGTCGTTACTGATATTTACCTGTTTTGGTATGAATAAGTAGTGAGTCTTCAGCTTTTGTGCCATTAGCGATGCAATTTTGGTAATTAATTTGTTCATCATTGAGTTAAGTAAGCTTATCTTCTAATTCCAGGATGTCCATTGTATTTACTGAAGTTA

Ace file of the UniGene sp_v3.0_unigene6616

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KH domain containing protein, putative [Solanum demissum]	-	-	0.0	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Poly(RC)-binding protein, putative	-	-	1.427e-07	-

Source	Gene names
Sma3	AT1G14170; At1g14170; At5g15270; GSVIVT00020994001; GSVIVT00038217001; LOC_Os03g25970; LOC_Os10g35220; OSJNBa0041P03.3; OSJNBb0048D20.13; Os03g0376800; Os10g0495000; Os10g0497500; OsI_11787; OsI_11789; OsI_34164; OsI_34185; OsJ_11034; OsJ_32017; PHYPADRAF

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002329331.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK75

Fln msg:

Fln protein: MDGEKYSSGKRSYSHIDAGEGNERSKRRHSDFERGSAMPGDNDTVYRILCPGNKIGSVIGKGGSIIKSLRQETHAKIKIADSIPGVEERVIIIFSSPKDQRKEHDEEKNSDEEADNAAKDDIDREPLCPAQDALFKVHARIVDGEGVAGSDYEEDDKSRNVTARLLVPTNQIGCLLGKGGKIIEKMRSDTSAQIRIMSKEQLPPCAMDTDELVQISGDPTVVKKALYEISARLHENPAKQRLSYNSGSHFGNNPYGSGGPAFSSVNLMPQGNPMWSHQNVGAPIVGIGPPMPWLGGYGNEAASAWHMNSSGFPVLPNLGGPSRKDGGPGKEVTIRILSPNDRVGGVIGKSGSTINQIRQESGSRIKIAETVSDSEETEIVVSASEFADDQVSPTIEALLQLQGRTTARSENEGHITTRLLVPSNQIGCLIGKAGSIISEMRKTSRADIRILSKENLPKCASQNDELVQIAGEANYARDALIQIASRLRAKVLQDGDGAGKGGPPGLSSKSSLSKADGAPISSHYSARQDMLSPGRMYPSSGLGFQGTGGRSSAGGYSSFGTYQSGGSGYDPIQGYTSSRTTDGGYSGGFAKNVSTTTVEVTIPKNAVGSVLGKRGSNIQNIREISGAKVKLHDSESGSSDRVIEISGTPEQTHAAKSLLQAFIATGGQSQPTRSAGRGY*

Protein Length: 681

Fln nts: ATGGGGAGAGCCCGCATGATAAAAACGGTGGCATCATCTATATAAAAGTGAAGTGGGGTTAAGCTAAACCGCTAATCGCTCGAAATTGAAAATAAACAAACGCAACGCAGGTTGGGCCTATTTAAGAGTGGTCGAATCGGCTAGGGTTTATCATTTTAGTGGAAGCTGAGAGGGCGTTCTGTTTAACCCCTACGCGGAACGAGCTGCGCGTTTCCTCTGCATTTGCTGCAAAAGCCCGTTATCACCTTTCAAGCCGAGTTTTGATTTTGACTAGATTTTTGGCA_-_ATGGACGGAGAGAAATATTCATCCGGAAAGCGTTCCTACTCGCACATTGATGCTGGGGAAGGCAATGAAAGGAGTAAAAGGCGACATTCTGACTTTGAACGGGGTTCTGCAATGCCCGGTGATAATGACACTGTTTATCGTATTCTTTGTCCTGGTAACAAGATAGGCAGTGTGATTGGGAAAGGTGGCAGTATTATAAAATCCTTGAGGCAAGAAACCCATGCCAAGATCAAAATTGCAGATTCTATCCCTGGTGTGGAAGAGAGGGTTATCATTATATTCAGCTCTCCAAAGGATCAGCGAAAGGAGCATGATGAAGAGAAGAATAGTGATGAGGAGGCTGACAATGCAGCTAAGGATGACATTGATAGGGAGCCTCTGTGTCCTGCACAGGACGCACTTTTTAAAGTACATGCAAGAATTGTCGATGGAGAGGGTGTTGCTGGTTCGGATTATGAAGAGGATGATAAGAGTCGGAATGTAACTGCTCGCCTTCTTGTGCCAACAAACCAAATTGGGTGCTTACTTGGAAAGGGTGGAAAGATAATTGAGAAAATGAGGAGTGACACTAGTGCACAAATTCGTATAATGTCCAAGGAACAGCTACCTCCCTGTGCGATGGATACTGACGAACTTGTTCAGATATCTGGAGATCCAACGGTGGTAAAAAAGGCCTTGTATGAGATTTCTGCTCGTTTGCACGAAAATCCAGCAAAACAGCGCCTTTCATATAACAGCGGTTCTCATTTTGGCAACAATCCTTATGGATCTGGTGGTCCTGCATTTTCTTCTGTAAATCTTATGCCCCAAGGAAATCCAATGTGGTCTCACCAAAATGTGGGTGCACCTATTGTTGGCATTGGTCCACCCATGCCATGGCTTGGAGGATATGGTAATGAAGCAGCTTCTGCATGGCATATGAACTCATCTGGTTTTCCCGTTCTTCCCAATTTGGGTGGGCCTTCCCGCAAGGATGGAGGTCCGGGAAAGGAGGTCACTATCAGAATCTTGTCTCCGAATGATAGGGTTGGTGGTGTAATTGGTAAGAGTGGCAGTACTATTAATCAGATAAGACAAGAATCAGGATCACGCATTAAGATAGCAGAAACAGTATCTGATTCAGAAGAAACTGAAATTGTAGTGTCGGCTTCAGAGTTTGCTGATGACCAAGTCTCGCCTACTATTGAGGCTCTACTACAACTGCAAGGCAGAACAACTGCGAGGTCTGAAAATGAAGGTCACATTACAACACGGCTCCTGGTTCCATCAAATCAGATTGGTTGTCTTATTGGCAAAGCAGGTAGCATCATATCTGAGATGCGGAAAACAAGTCGGGCTGATATTCGTATATTGTCCAAGGAAAATTTACCGAAGTGTGCTTCACAGAATGATGAACTAGTCCAGATTGCTGGGGAAGCCAATTATGCCAGAGATGCTCTTATACAAATTGCTTCGAGGCTGCGAGCAAAGGTTCTTCAAGATGGAGATGGTGCTGGTAAAGGTGGCCCCCCTGGTCTCTCATCCAAATCCAGCCTTTCAAAGGCTGACGGGGCTCCAATTTCATCCCATTATTCAGCAAGACAAGATATGTTATCCCCTGGAAGAATGTATCCTTCATCTGGTCTTGGGTTCCAAGGAACTGGTGGCAGATCATCAGCTGGGGGATATAGCAGTTTTGGAACATATCAGAGTGGAGGGAGTGGGTATGATCCCATTCAAGGATATACATCAAGTCGTACAACTGATGGCGGGTATTCTGGAGGGTTTGCGAAAAATGTATCCACAACGACTGTCGAGGTTACTATACCAAAAAACGCAGTTGGGTCAGTCCTTGGGAAGAGAGGAAGTAACATTCAAAACATTCGAGAGATATCTGGAGCAAAAGTAAAGTTGCATGATTCTGAGTCTGGTTCCTCGGATCGTGTTATTGAAATATCTGGGACACCAGAACAGACACACGCAGCAAAGAGCTTGCTTCAAGCATTTATTGCAACTGGTGGTCAAAGCCAGCCCACACGCAGTGCAGGCCGGGGTTATTAG___CACGGGACTAGTTTTGATGACTGGCAGCCACGATGTATGATGCCTGGAGCCAGTCTATCATCCCATGCTGAAGCCTCAGCCCAAAACTGAAGATCTGATGAGAAGAGCCGTGGAAAGCCTATTGCCCATGCTTTGGAAGTATTAATTTAGTTGGACTAGCTTCTCAAGGAAATTTTGTTCCCTTGAGTGTTCTTTCCTTTAACTGCCAGTAGTTTTTGGAGTTTATGAACCATGTACTGTAAGGCCCAGATTCAGCATTGAAGTATTGGGAGTTTCAAGACTGAATGATCAAAAGTGGATTTTGTGTTGTCGCATATTATGGCCAATTCCTTCTCCTTAGGATTTTGGAGCCGGATCCCAGACCAAAAATCATTTTGGATTATTGTATCATTTTTTTAAAGAATTTAAGTATACTCACTAAAATGGTACGAGTAGTGAAGGTTTTTCAATAGGATTATTATAAATATGTATGCCTTCTGTATTTTGTACCCTGAAGGTTCCTGAAGGTTTTGATTATCACGTAGGCTATGTTGGAATCCCTTTTGTAGTAGTACATTTCTGTGTAGTCTGTGGTCGTTACTGATATTTACCTGTTTTGGTATGAATAAGTAGTGAGTCTTCAGCTTTTGTGCCATTAGCGATGCAATTTTGGTAATTAATTTGTTCATCATTGAGTTAAGTAAGCTTATCTTCTAATTCCAGGATGTCCATTGTATTTACTGAAGTTA

Fln Alignment:

Contig6616___SGKRSYSHIDAGEGNERSKRRHSDFERGSAMPGDNDTVYRILCPGNXXXXXXXXXXXXXXXLRQETHAKIKIADSIPGVEERVIIIFSSPKDQRKEHDEEKNSDEEADNAAKDDIDREPLCPAQDALFKVHARIVDGEGVAGSDYEEDDKSRNVTARLLVPTNQXXXXXXXXXXXXEKMRSDTSAQIRIMSKEQLPPCAMDTDELVQISGDPTVVKKALYEISARLHENPAKQRLSYNSGSHFGNNPY--GSGGPAFSSVNLMPQGNPMWSHQNVGAPIVGIGPPMPWLGGYGNEAASAWHMNSSGFPVLPNLGGPSRKDGGPGKEVTIRILSPNDRVGGVIGKSGSTINQIRQESGSRIKIAETVSDSEETEIVVSASEFADDQVSPTIEALLQLQGRTTARSENEGHITTRLLVPSNQIGCLIGKAGSIISEMRKTSRADIRILSKENLPKCASQNDELVQIAGEANYARDALIQIASRLRAKVLQXXXXXXXXXXXXXXXXXXXXXXXXXPISSHYSARQ-DMLSPGRMYPSSGLGFQGTGGRSSAGGYSSFGTYQSGGSGYDPIQGYTSSRTTDGGYSGGFAKNVSTTTVEVTIPKNAVGSVLGKRGSNIQNIREISGAKVKLHDSESGSSDRVIEISGTPEQTHAAKSLLQAFIATGGQSQPTRSAGRGY
B8LK75______________SGKRTRTEHDLAENNDRNKRRNSGTGREQTMPGADSTVYRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSSPLSKDKEKDDDD-----------DDNENEPVCPAQDGLLRVHSVIVQES--SGKD-NDADKKRPQDARLLVANSQIGSLIGKGGNNIQKLRSESGAQIQIPRKDELPGCAFSFDELVVISGDAAAVKKALYAVSAFLFKHPPKEQIPWSVILPETNQSSLPPSGVPTFPPANYLPQGDSLFGHHNLSAPILGYASRLPGLGGYGSEAGSAWPLSNPALPSFSKFGNSTTKK--TSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSATELADDRVSPTIEAVLLLQGKTSGTTDKDGAISTRFLVPSKHIGCLLGKGGNIISEMRKQTRANIRIFRKDERPICVSENEELVQVTGEPGVAKDALIQILKRLRENIFK--DKDGASNTDSVLPLSSLSVPSAVPLSSSYGTRKYDIVSP-----------RGAIAGRSAAGLSGFGALQAGTGSYASLQPYAPTRTFGIGLSGGHLNSSLAPSHEFAIPNSAVSSVLGRGGSNISHIREISGATVKLRDPITGASDRVVEISGTPEQSHAAQSLIQAFMLT-GQSQQSRMTSRTY

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
491	75		25		0.996473
752		20		80	0.995493
1173		10		90	0.90298
1176			90	10	0.90298
1182	11		88		0.923564
1183	88	11			0.923564
1185			88	11	0.923564
1186		88		11	0.923564
1188			88	11	0.923564
1189		88	11		0.923564
1190			11	88	0.923564
1191			11	88	0.923564
1320	10		90		0.90298
1649		12		87	0.992554
2063	93		6		0.999718
2077		3		96	0.978941
2203	96		3		0.980808
2213		3		96	0.982677
2246	96		3		0.982677
2309	92		7		0.999992
2322		3		96	0.979497
2380	2			98	0.962297
2419		98		1	0.943275
2528		2		97	0.952734
2722	46			46	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain