SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6608

Length: 2999 nt

UniGene Fasta

>sp_v3.0_unigene6608
ATGGGGGTCATGGGGGTGGTCCTCCCTCCAGGGGAAGGAAAATATGAAAATTATGAAAATACGACAATTCAGTAGGACCTACCTGCAATGGTACTCGGTCAAGTCCGTGCTGTGGCACGTGGTCAAGTCCATGGACAAAATTGGAGGGTCGAATTAAATGCAGTACCATGGGCGACGCTGATATTTCAAAGAAAATGCCATACTGGCGCTTTCCTAAATCTCTGCTTCCATTACCCTCCCTCCCTCCACGCTCTTCCATTTTTAAGTGCATCTTACAGCCAAAGAAAACCCGCCATGGATAAATCCCAAGACCTCCTTCAAGCTGCCCAGCCCAAGTCTGCAGAGCAGAAGATTAAAGGGTTTATGGTCATACAGAAGAAAAATGTTTTGGATCTCAACGATTTTAAGGCAGGCATCACAGAAAATCTTAGCGAGTTGTTTGGCAGAGGAGTCTCGTTCCAGCTCGTCAGCGCATCTCAAATCGATTCCAGCAATGAAATTGGAAAGTTGAGCGAGAAAGCGCCTCTTCAGAACTGGATCTCTACTCATGAAGGAATACTCACGGGCCAGACAACCTATGGCGTCGAGTTTGACTGGGACTCCAACTTCGGAGTCCCCGGAGCATTCTTCATTACAAATTCGCATCATCACGAGTTCTTCCTCAACTCACTCACTCTTCAGGTTCCCGGTCATGGCAATGTCCACTTCGACTGCAACTCTTGGGTGTATCCCGCCTCTAAATACAACAGAGACCGTGTCTTCTTCTCTAACCGGAGTTATCTCCCAGAGAAGAGTCCTCCTGCGCTCGTTAAACTGAGGAATGAGCAGCTGAGAAACCTAAGAGGCGAATACGATGGAATGGCAGAGAGTGAGAGGAAAGAGTGTGACAGAGTGTATGACTACGATTTCTACAATGATCTCGGAAACCCTGACAAGAATCTAGAACTCAGCCGGCCGGTGCTAGGAGGGTCTCAACAGTTTCCGTATCCCCGCAGGGGCAGAACGGGTCGCCCACGCACAAAAACAGAGCCCGCGAGTGAAAGCAGATTGGAATTAGACATGAGTCTCGATATCTATGTTCCACGAGATGAACGTTTTGGGCATATCAAATTGTCTGATTTCTTGGCCTATTCCCTCAAGTCAGTCGCCCAATTCTTGGTGCCAGAGCTCAAATCGCTATTCGATTCAACCCCCAACGAATTCGACTCATTTGAAAACGGTATGAAGCTTTACTCCGATGGGATCAAGCTGTCGGAGAATCCAATTCTCGACGCTGCGAAGAATCTCATTCCTCTTGAGCTCATCAGGGAGTTCCTCACGACAGATGGCCAAAAATTGCTGAAGTATCCCCTTCCTCAGGTTATTTCCAATGACAAATTTGCATGGAGGAAAGACGAAGAGTTTGCGCGGCAGACGTTGGCTGGTGTCGATCCGGTTGTTATACAGAGACTCAAAAGTTTTCCCCCAAGAAGTAAACTGGACCCGGGGACGTATGGTCCTCAGATCAGTTCTATTACTTCTTCACATATAGAAAAGAATATCGATGGGCTAACAGTGGAGCAGGCTCTAGAGGACAACAAGTTGTTCATTCTGGACCATCATGATGTCTTCATGCCTTATGTTAACCGAATAAATGCTCTGTCTAGAAAGATATATGCTTCTCGCACAATTCTGTTCCTTAACAAGGATGGCACATTAAGGCCAGTAGCAATCGAGCTGAGTCTACCCCCTTCAGATCAACGCCCGGCAAGTGTTCGTAAGGTGTTTACTCCTGCAGAGGAAGGAGCAGAAGGAGCTTTATGGCAGCTCGCCAAGGCCTATGTAGCCGTTAATGATTCTGGTTACCATCAGCTTATAAGTCACTGGCTTAAGACTCACGCAGTCACGGAGCCATTTGTCATCGCTACCAACAGACAGCTGAGTGTGATGCATCCCGTGTATAAGCTACTGAGCCCCCATTTCAGGGGCACCATGAACATCAACGCTCTGGCTCGCCAAATTCTTATAAATGGCGGAGGCATTCTTGAAAGAACAGTGTTTCCTGGAAAGTATGCCATGGAGATGTCCGCGGTAGCATACAAGGACTGGAGGTTTGACGAACAAGGGTTGCCTGCAGATCTTCTCAAAAGGGGTATGGCAGTGGTGGACTCATCAATGCCCCACGGACTTAAGCTGATAATCGAAGACTACCCTTATGCTGTGGATGGATTGGAGATATGGTTCGCAATAGTGTCATGGGTTAAGGAGTACCTGTCCTTGTACTATCAGAAAGATGATGCAGTGAAATCTGATAGGGAGCTTCAAGCATGGTGGACCGAAATCAGAAATGTGGGTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGACAACGTGGAAGATGTTGAAAAGGCAATAACAACAATCATATGGGTGGCCTCTGCTCTTCACGCTGCAGTTAATTTCGGGCAATACCCATACGCAGGATACATGCCAAATCGGCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAGGGTCTGAAGAATTCTCAGAGCTGGTGCAGAATCCGGACTTGTTTTTGCTGAGAACGATAAGCAACCAATTTGAAACGACACTGGGCATAGCGTTGATAGAAATTCTGTCCACGCACTCCACAGACGAAGTATATCTAGGACAAAGAGCCACGAGTGAATGGAGTGAGGCTGAACGTGTAACAGAAGCTTTTGAACGCTTCGGTATGAAGCTGAAAGAGCTTGAGAAAAATATAAGAGAGAGAAACGAAGATGCAGAAAAGTTGAAGAACAGATGTGGTCCTGCTCAGGTTCCTTATACTTTGCTTTATCCAAACACCTCGGATGTGAGTCATAAAGGTGGACTCACTGGTAAAGGAATTCCCAATAGCGTTTCTATTTAGGTTGTGCTTGGGATGATTATGTATCAAATTCCTTACTGGAATTTCAAAGAGTAGTCTTTACTTAGTTTGTATTTAGAAAATTCTTCTGATACGATTTC

Ace file of the UniGene sp_v3.0_unigene6608

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Ricinus communis RepID=B9RSQ2_RICCO	-	-	62%
FL-Next	sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis).	-	-	72%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g17420; At1g55020; At1g67560; At1g72520; At3g45140; AtLOX6; B1168A08.24; B1168A08.28-1; B1168A08.28-2; CM-LOX1; CM-LOX2; F12B7.11; F14C21.3; F14C21.54; F28G4.10; F28P22.29; GSVIVT00008869001; GSVIVT00013069001; GSVIVT00019960001; GSVIVT00022800001; GSV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	phytoene dehydrogenase activity	GO:0016166	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55020.1	LOX1, ATLOX1 lipoxygenase 1 chr1:20525798-20530143 FORWARD LENGTH=859	60%
RefSeq	Arabidopsis thaliana	NP_175900.1	lipoxygenase 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002315780.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G9L7U0

Fln msg: your sequence is longer than subject: 938 - 855

Fln protein: MVLGQVRAVARGQVHGQNWRVELNAVPWATLIFQRKCHTGAFLNLCFHYPPSLHALPFLSASYSQRKPAMDKSQDLLQAAQPKSAEQKIKGFMVIQKKNVLDLNDFKAGITENLSELFGRGVSFQLVSASQIDSSNEIGKLSEKAPLQNWISTHEGILTGQTTYGVEFDWDSNFGVPGAFFITNSHHHEFFLNSLTLQVPGHGNVHFDCNSWVYPASKYNRDRVFFSNRSYLPEKSPPALVKLRNEQLRNLRGEYDGMAESERKECDRVYDYDFYNDLGNPDKNLELSRPVLGGSQQFPYPRRGRTGRPRTKTEPASESRLELDMSLDIYVPRDERFGHIKLSDFLAYSLKSVAQFLVPELKSLFDSTPNEFDSFENGMKLYSDGIKLSENPILDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINALSRKIYASRTILFLNKDGTLRPVAIELSLPPSDQRPASVRKVFTPAEEGAEGALWQLAKAYVAVNDSGYHQLISHWLKTHAVTEPFVIATNRQLSVMHPVYKLLSPHFRGTMNINALARQILINGGGILERTVFPGKYAMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQKDDAVKSDRELQAWWTEIRNVGHGDKKDETWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEEGSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQRATSEWSEAERVTEAFERFGMKLKELEKNIRERNEDAEKLKNRCGPAQVPYTLLYPNTSDVSHKGGLTGKGIPNSVSI*

Protein Length: 939

Fln nts: ATGGGGGTCATGGGGGTGGTCCTCCCTCCAGGGGAAGGAAAATATGAAAATTATGAAAATACGACAATTCAGTAGGACCTACCTGCA_-_ATGGTACTCGGTCAAGTCCGTGCTGTGGCACGTGGTCAAGTCCATGGACAAAATTGGAGGGTCGAATTAAATGCAGTACCATGGGCGACGCTGATATTTCAAAGAAAATGCCATACTGGCGCTTTCCTAAATCTCTGCTTCCATTACCCTCCCTCCCTCCACGCTCTTCCATTTTTAAGTGCATCTTACAGCCAAAGAAAACCCGCCATGGATAAATCCCAAGACCTCCTTCAAGCTGCCCAGCCCAAGTCTGCAGAGCAGAAGATTAAAGGGTTTATGGTCATACAGAAGAAAAATGTTTTGGATCTCAACGATTTTAAGGCAGGCATCACAGAAAATCTTAGCGAGTTGTTTGGCAGAGGAGTCTCGTTCCAGCTCGTCAGCGCATCTCAAATCGATTCCAGCAATGAAATTGGAAAGTTGAGCGAGAAAGCGCCTCTTCAGAACTGGATCTCTACTCATGAAGGAATACTCACGGGCCAGACAACCTATGGCGTCGAGTTTGACTGGGACTCCAACTTCGGAGTCCCCGGAGCATTCTTCATTACAAATTCGCATCATCACGAGTTCTTCCTCAACTCACTCACTCTTCAGGTTCCCGGTCATGGCAATGTCCACTTCGACTGCAACTCTTGGGTGTATCCCGCCTCTAAATACAACAGAGACCGTGTCTTCTTCTCTAACCGGAGTTATCTCCCAGAGAAGAGTCCTCCTGCGCTCGTTAAACTGAGGAATGAGCAGCTGAGAAACCTAAGAGGCGAATACGATGGAATGGCAGAGAGTGAGAGGAAAGAGTGTGACAGAGTGTATGACTACGATTTCTACAATGATCTCGGAAACCCTGACAAGAATCTAGAACTCAGCCGGCCGGTGCTAGGAGGGTCTCAACAGTTTCCGTATCCCCGCAGGGGCAGAACGGGTCGCCCACGCACAAAAACAGAGCCCGCGAGTGAAAGCAGATTGGAATTAGACATGAGTCTCGATATCTATGTTCCACGAGATGAACGTTTTGGGCATATCAAATTGTCTGATTTCTTGGCCTATTCCCTCAAGTCAGTCGCCCAATTCTTGGTGCCAGAGCTCAAATCGCTATTCGATTCAACCCCCAACGAATTCGACTCATTTGAAAACGGTATGAAGCTTTACTCCGATGGGATCAAGCTGTCGGAGAATCCAATTCTCGACGCTGCGAAGAATCTCATTCCTCTTGAGCTCATCAGGGAGTTCCTCACGACAGATGGCCAAAAATTGCTGAAGTATCCCCTTCCTCAGGTTATTTCCAATGACAAATTTGCATGGAGGAAAGACGAAGAGTTTGCGCGGCAGACGTTGGCTGGTGTCGATCCGGTTGTTATACAGAGACTCAAAAGTTTTCCCCCAAGAAGTAAACTGGACCCGGGGACGTATGGTCCTCAGATCAGTTCTATTACTTCTTCACATATAGAAAAGAATATCGATGGGCTAACAGTGGAGCAGGCTCTAGAGGACAACAAGTTGTTCATTCTGGACCATCATGATGTCTTCATGCCTTATGTTAACCGAATAAATGCTCTGTCTAGAAAGATATATGCTTCTCGCACAATTCTGTTCCTTAACAAGGATGGCACATTAAGGCCAGTAGCAATCGAGCTGAGTCTACCCCCTTCAGATCAACGCCCGGCAAGTGTTCGTAAGGTGTTTACTCCTGCAGAGGAAGGAGCAGAAGGAGCTTTATGGCAGCTCGCCAAGGCCTATGTAGCCGTTAATGATTCTGGTTACCATCAGCTTATAAGTCACTGGCTTAAGACTCACGCAGTCACGGAGCCATTTGTCATCGCTACCAACAGACAGCTGAGTGTGATGCATCCCGTGTATAAGCTACTGAGCCCCCATTTCAGGGGCACCATGAACATCAACGCTCTGGCTCGCCAAATTCTTATAAATGGCGGAGGCATTCTTGAAAGAACAGTGTTTCCTGGAAAGTATGCCATGGAGATGTCCGCGGTAGCATACAAGGACTGGAGGTTTGACGAACAAGGGTTGCCTGCAGATCTTCTCAAAAGGGGTATGGCAGTGGTGGACTCATCAATGCCCCACGGACTTAAGCTGATAATCGAAGACTACCCTTATGCTGTGGATGGATTGGAGATATGGTTCGCAATAGTGTCATGGGTTAAGGAGTACCTGTCCTTGTACTATCAGAAAGATGATGCAGTGAAATCTGATAGGGAGCTTCAAGCATGGTGGACCGAAATCAGAAATGTGGGTCACGGAGACAAGAAGGACGAGACATGGTGGTACAGCATGGACAACGTGGAAGATGTTGAAAAGGCAATAACAACAATCATATGGGTGGCCTCTGCTCTTCACGCTGCAGTTAATTTCGGGCAATACCCATACGCAGGATACATGCCAAATCGGCCCACCATCAGCAGAAGGTTAATTCCGGAAGAAGGGTCTGAAGAATTCTCAGAGCTGGTGCAGAATCCGGACTTGTTTTTGCTGAGAACGATAAGCAACCAATTTGAAACGACACTGGGCATAGCGTTGATAGAAATTCTGTCCACGCACTCCACAGACGAAGTATATCTAGGACAAAGAGCCACGAGTGAATGGAGTGAGGCTGAACGTGTAACAGAAGCTTTTGAACGCTTCGGTATGAAGCTGAAAGAGCTTGAGAAAAATATAAGAGAGAGAAACGAAGATGCAGAAAAGTTGAAGAACAGATGTGGTCCTGCTCAGGTTCCTTATACTTTGCTTTATCCAAACACCTCGGATGTGAGTCATAAAGGTGGACTCACTGGTAAAGGAATTCCCAATAGCGTTTCTATTTAG___GTTGTGCTTGGGATGATTATGTATCAAATTCCTTACTGGAATTTCAAAGAGTAGTCTTTACTTAGTTTGTATTTAGAAAATTCTTCTGATACGATTTC

Fln Alignment:

Contig6608___AEQKIKGFMVIQKKNVLDLNDFKAGITENLSELFGRGVSFQLVSASQIDSSNEIGKLSEKAPLQNWISTHEGILTGQTTYGVEFDWDS-NFGVPGAFFITNSHHHEFFLNSLTLQVPG--HGNVHFDCNSWVYPASKYNRDRVFFSNRSYLPEKSPPALVKLRNEQLRNLRGEYDGMAESERKECDRVYDYDFYNDLGNPDKNLELSRPVLGGSQQFPYXXXXXXXXXXXKTEPASESRLELDMSLDIYVPRDERFGHIKLSDFLAYSLKSVAQFLVPELKSLFDSTPNEFDSFENGMKLYSDGIKLSENPILDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINAL-SRKIYASRTILFLNKDGTLRPVAIELSLPPSDQ--RPASVRKVFTPAEEGAEGALWQLAKAYVAVNDSGYHQLISHWLKTHAVTEPFVIATNRQLSVMHPVYKLLSPHFRGTMNINALARQILINGGGILERTVFPGKYAMEMSAVAYKDWRFDEQGLPADLLKRGMAVVDSSMPHGLKLIIEDYPYAVDGLEIWFAIVSWVKEYLSLYYQKDDAVKSDRELQAWWTEIRNVGHGDKKDETWWYSMDNVEDVEKAITTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRLIPEEGSEEFSELVQNPDLFLLRTISNQFETTLGIALIEILSTHSTDEVYLGQRATSEWSEAERVTEAFERFGMKLKELEKNIRERNEDAEKLKNRCGPAQVPYTLLYPNTSDVSHKGGLTGKGIPNSVSI
G9L7U0______________AMESVKGVVVLQKKNVLDLNDFHAGIVDNLSELLGSGVSLTLVGLGTPPTKSGAKLQSEPAYLKKWITTRDGVVTGQTTYPVEFKWDSIQMGTPGAFFIKNFHKHEFFLNSLTLHLPGAAQDTVHFVCDSWVYPASRYNTDRIFFSNRNYLPHETPPALVKLRNEELVNLRGDGSG----KREEWDRVYDYDLYNDLGNPDKDEEYSRQVLGGSKDFPYPRRGRTGRKPTKTDAASESRVPIQSSLDIFVPRDERFGHLKLSDFLAYALKSVGQVLLPELKSLFDSTPNEFDSFEDLMKLYSDGIKLPSNPLLDAARSLIPLEFIKQLVRSDGEKLLKFPIPKVIASDEFAWRKDEEFAREMLSGVNPVIIQRLESFPPRSELDPEKYGPQMSSITVSHIEKSLDGLTVEQALGEKKLFIVDHHDAFMPYLNRINALDSTKTYATRTILFLREDGTLKPVAIELSLPVSKELGRP-YYRNVLTPAEKGVEGALWQLAKAYVAVNDSGYHQLISHWLRTHAVTEPFIIATNRQLSVMHPVHKLLSPHFRDTMNINALSRQILINAGGILEGTVFTGKYAMEMSAVVYKGWRFDEQGLPADLVKRGMA--EEVEGTGLRLVVEDYPYAVDGLEIWSAIQSWVVDYLSFYYQNDDGVKGDTELQAWWYEIVNVGHGDHKDATWWYQMQSVKELEKALTTIIWVASALHAAVNFGQYAYAGYMPNRPTMSRKWIPEEGSKEFAQLVEKPDLFLLNTLSNQFQTTLGIALIEILSTHSSDELYLGQRASSHWTHDDSVLEAFERFASSLKESEKKINERNKD-QRLKNRSGPVQIPYTLLYPSTSDVSGVGGLTGKGIPNSVSI

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
782	33	66			0.997452
832	14		14		0.984337
833	14		85		0.993533
945		42	57		1.0
959	14		85		0.993533
960		14	85		0.993533
962			85	14	0.993533
1060	83		16		0.994512
1107	60	40			1.0
1306		25		75	0.996473
1427			33	66	0.997452
1487		50		50	1.0
1612		25		75	0.996473
1746		80		20	0.995493
1748		80	20		0.995493
1889		71	28		1.0
1904	12	87			0.992554
1919	87		12		0.992554
2014	87		12		0.992554
2089	50		50		1.0
2291	50		25		0.995533
2503			90	10	0.90298
2504		90	10		0.90298
2505	90		10		0.90298
2556	88			11	0.923564
2798	87		12		0.992554
2819		12		87	0.992554
2850	14		85		0.993533
2858		14		85	0.993533
2861	81		18		0.999994
2864	27			72	1.0
2906		16	83		0.994512
2907	16		83		0.994512
2911		20		80	0.995493
2943			20	80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
234	247	CCCT CCCT CCCT CC	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain