SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6605

Length: 1970 nt

UniGene Fasta

>sp_v3.0_unigene6605
CGTCGTGACCTTGGCTGTCACTCATTGTTCATAGTCTAGATGAGGATGGTGACATGGGTGTAGCTTTCTGCTTTAGAAGCAAGCCCTTCTCTTGCTCTGTAACAGACATGGAGAAAGTTACTCCTTTTGAAGTCGGGGATGAAATTCATATTCATGTCATCTGTCACAGAACCACGTTTAGGATGGTCTCGTGAGACATCAGCAACAACGGGAAAGATCGCGAAAATAGATATGGACGGCACATTGAATGTGAAAGTGGCTGGCAGAAGTACGTTCTGGAAGGTTGCTCCAGGAGATGCTGAAAGACTATCAGGTTTTGAAGTTGGAGACTGGGTCAGACTTAAGCCAACTCTTGGGATCAGACCTAGCTATGATTGGCATGGGATTGGCAAAGACAGTTTTGCTGTGGTCCACAGTCTATCTGACACCGGTTACTTGGAGCTTGCAGGGTGTTTCAGAAAGGGGAGATGGATGACTCATTATACAGAGGTCGAGAAAGTTCCAAGCCTGAAGGTTGGTCAGCATGTTCATTTCAGAGCAGGACTGACTGAGCCTAGATGGGGTTGGAGAGGTGCTTCTCCAGACTCTCATGGTGTGATAATTGGTGTCCATGCTGATGGTGAAGTGCGGGTAGCATTTTCAGGCCTTTCTGCTCCATGGCGAGGTGATCCAGCTGACCTAGAGAAAGAAGAGATGTTTGAGGTGGGAGATTGGGTGAAAGTAAAGTCAGACTTAGTAGAGCCTAGAAATGGGTGGAAGTCGGTAAGGCCAGGGAGTGTTGGTGTAGTACAGGGAATAGCATATGAAAATGAAGGAGATATTGGGGAAAGGACTTTCCTTATTGGTTTCTGTGGTGAGCAGGAAAGATGGCTTGGTCTACCTCATGAACTTGAAAGTGTAAAGCCATTTTCTGTTGGTCAGCAGGTATGCATTAAATCCTCAGTGAAGCAGCCAAGGTTTGGTTGGTCAGGCCATACCCATTGCAGCATTGGAACAATTACTACGATTGATGCTGATGGAAGGTTGCGTGTATATACATCTTCTGGTTCTCAGAAAGCTTGGATGCTTGACCCTGCAGAAGTGGAGGTTGTAGAAGAACAACCAATTTGCATTGGGGACTGGGTAAGAGTAAAGTCCTCAGTCCCTACTCCAACTCATCAATGGGGCGAAGTGACACACAAAAGTATTGGAGTGGTTCAGAAGATTGATGACGATGGTGATTTGTGGGTTGCCTTTTGTTTTCTAGAAAGGTTATGGGTTTGCAAACCTTCAGAAATGGAGAGAGTGCGGCCTTTTAACATTGGAGACAGGGTGAGGGTGAACCACAGTGTTGTGACCCCAAGGTGGGGTTGGGGTATGGAGACATATGCAAGTAGAGGAGTAATTTCTGGGGTTGATGCAGATGGAAAATTGAGAATAAAATTCGCATGGCGAGAAGGAAGGCTTTGGGTTGGAGACCCTGCAGATGTTGAATTCGATTCAGATGTTTCATGATGCAATGGCCCTGGTAATTCCTGCTTTTGTATCTAGTTTCGTAACTAGACGATGGATTTCGGTCTGGTAGGAATGTGATTCTTTCACTTCATTAGATTTTTATAGGCTCTGGTAGGGAAGGGGGAATCACACTTCTACCAGGTCTATCGTCTACTTAGGAAATTTAGGGTGCTGGGCTGTAACCTTTGTATAATACTGGACTGTATTTCCGGTGCATATCATGTTTGCACGATTAGAATATAGGTTTACTCTGCTTGTGTAATATTGTGCTGCTGTAGGTATTCGTGTGCTCTATTATGGCTGTTAGCCAATTTAACATGTAATCTCCTATGTTACGAGTTCTTGCCATCTTTAATGGCATGATATTTTTAGCAATTCTTTCTAGCTTGTGAAGTTATCTGTCCCCACAGTGAGGATATATGTTCTTTGTCCGATTAAAGCTATTTTAAATTTTGTTAGTGTCCTCTATTTGAGAG

Ace file of the UniGene sp_v3.0_unigene6605

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ankyrin-repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9RG78_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	34%

Source	Gene names
Sma3	At5g13530; At5g13540; GSVIVT00030895001; KEG; Os05g0392000; OsI_19839; OsJ_18429; POPTRDRAFT_1068557; POPTRDRAFT_647334; RCOM_1452000; T6I14.60; T6I14_70; VITISV_007720;

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13530.1	" KEG protein kinases;ubiquitin-protein ligases chr5:4345618-4354369 FORWARD LENGTH=1625"	64%
RefSeq	Arabidopsis thaliana	NP_001190303.1	E3 ubiquitin-protein ligase KEG [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002298466.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8SNB7

Fln msg: your sequence is longer than subject: 452 - 409

Fln protein: MKFIFMSSVTEPRLGWSRETSATTGKIAKIDMDGTLNVKVAGRSTFWKVAPGDAERLSGFEVGDWVRLKPTLGIRPSYDWHGIGKDSFAVVHSLSDTGYLELAGCFRKGRWMTHYTEVEKVPSLKVGQHVHFRAGLTEPRWGWRGASPDSHGVIIGVHADGEVRVAFSGLSAPWRGDPADLEKEEMFEVGDWVKVKSDLVEPRNGWKSVRPGSVGVVQGIAYENEGDIGERTFLIGFCGEQERWLGLPHELESVKPFSVGQQVCIKSSVKQPRFGWSGHTHCSIGTITTIDADGRLRVYTSSGSQKAWMLDPAEVEVVEEQPICIGDWVRVKSSVPTPTHQWGEVTHKSIGVVQKIDDDGDLWVAFCFLERLWVCKPSEMERVRPFNIGDRVRVNHSVVTPRWGWGMETYASRGVISGVDADGKLRIKFAWREGRLWVGDPADVEFDSDVS*

Protein Length: 453

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTCATAGTCTAGATGAGGATGGTGACATGGGTGTAGCTTTCTGCTTTAGAAGCAAGCCCTTCTCTTGCTCTGTAACAGACATGGAGAAAGTTACTCCTTTTGAAGTCGGGG_-_ATGAAATTCATATTCATGTCATCTGTCACAGAACCACGTTTAGGATGGTCTCGTGAGACATCAGCAACAACGGGAAAGATCGCGAAAATAGATATGGACGGCACATTGAATGTGAAAGTGGCTGGCAGAAGTACGTTCTGGAAGGTTGCTCCAGGAGATGCTGAAAGACTATCAGGTTTTGAAGTTGGAGACTGGGTCAGACTTAAGCCAACTCTTGGGATCAGACCTAGCTATGATTGGCATGGGATTGGCAAAGACAGTTTTGCTGTGGTCCACAGTCTATCTGACACCGGTTACTTGGAGCTTGCAGGGTGTTTCAGAAAGGGGAGATGGATGACTCATTATACAGAGGTCGAGAAAGTTCCAAGCCTGAAGGTTGGTCAGCATGTTCATTTCAGAGCAGGACTGACTGAGCCTAGATGGGGTTGGAGAGGTGCTTCTCCAGACTCTCATGGTGTGATAATTGGTGTCCATGCTGATGGTGAAGTGCGGGTAGCATTTTCAGGCCTTTCTGCTCCATGGCGAGGTGATCCAGCTGACCTAGAGAAAGAAGAGATGTTTGAGGTGGGAGATTGGGTGAAAGTAAAGTCAGACTTAGTAGAGCCTAGAAATGGGTGGAAGTCGGTAAGGCCAGGGAGTGTTGGTGTAGTACAGGGAATAGCATATGAAAATGAAGGAGATATTGGGGAAAGGACTTTCCTTATTGGTTTCTGTGGTGAGCAGGAAAGATGGCTTGGTCTACCTCATGAACTTGAAAGTGTAAAGCCATTTTCTGTTGGTCAGCAGGTATGCATTAAATCCTCAGTGAAGCAGCCAAGGTTTGGTTGGTCAGGCCATACCCATTGCAGCATTGGAACAATTACTACGATTGATGCTGATGGAAGGTTGCGTGTATATACATCTTCTGGTTCTCAGAAAGCTTGGATGCTTGACCCTGCAGAAGTGGAGGTTGTAGAAGAACAACCAATTTGCATTGGGGACTGGGTAAGAGTAAAGTCCTCAGTCCCTACTCCAACTCATCAATGGGGCGAAGTGACACACAAAAGTATTGGAGTGGTTCAGAAGATTGATGACGATGGTGATTTGTGGGTTGCCTTTTGTTTTCTAGAAAGGTTATGGGTTTGCAAACCTTCAGAAATGGAGAGAGTGCGGCCTTTTAACATTGGAGACAGGGTGAGGGTGAACCACAGTGTTGTGACCCCAAGGTGGGGTTGGGGTATGGAGACATATGCAAGTAGAGGAGTAATTTCTGGGGTTGATGCAGATGGAAAATTGAGAATAAAATTCGCATGGCGAGAAGGAAGGCTTTGGGTTGGAGACCCTGCAGATGTTGAATTCGATTCAGATGTTTCATGA___TGCAATGGCCCTGGTAATTCCTGCTTTTGTATCTAGTTTCGTAACTAGACGATGGATTTCGGTCTGGTAGGAATGTGATTCTTTCACTTCATTAGATTTTTATAGGCTCTGGTAGGGAAGGGGGAATCACACTTCTACCAGGTCTATCGTCTACTTAGGAAATTTAGGGTGCTGGGCTGTAACCTTTGTATAATACTGGACTGTATTTCCGGTGCATATCATGTTTGCACGATTAGAATATAGGTTTACTCTGCTTGTGTAATATTGTGCTGCTGTAGGTATTCGTGTGCTCTATTATGGCTGTTAGCCAATTTAACATGTAATCTCCTATGTTACGAGTTCTTGCCATCTTTAATGGCATGATATTTTTAGCAATTCTTTCTAGCTTGTGAAGTTATCTGTCCCCACAGTGAGGATATATGTTCTTTGTCCGATTAAAGCTATTTTAAATTTTGTTAGTGTCCTCTATTTGAGAG

Fln Alignment:

Contig6605___KLLLLKSGMKFIFMSSVTEPRLGWSRETSATTGKIAKIDMDGTLNVKVAGRSTFWKVAPGDAERLSGFEVGDWVRLKPTLGIRPSYDWHGIGKDSFAVVHSLS-------DTGYLELAGCFRKGRWMTHYTEVEKVPSLKVGQHVHFRAGLTEPRWGWRGASPDSHGVIIGVHADGEVRVAFSGLSAPWRGDPADLE--KEEMFEVGDWVKVKSDLVEPRNGWKSVRPGSVGVVQGIAYENEGDIGERTFLIGFCGEQERWLGLPHELESVKPFSVGQQVCIKSSVKQPRFGWSGHTHCSIGTITTIDADGRLRVYTSSGSQKAWMLDPAEVEV
D8SNB7______________KVQVLRVGQHVRFRPGISEPRWGWRGCTASSRGVIIGVHADGELRIAFPGLKTPWRGDPADLEKEEIFEVGDWVKVKDDLQ-ETKYGWKGARPGSVGIVQGIGYENGGDYDERALLVGFCGEQERWIGLPSEVERAMPLKASQRIRVKASVSQPRFGWSGHDHSTITTITTVDADGKLRVYSPASQRSWVLDPTEVELYEEQPICIGDWVRVKPSVPTPTHQWGEVTHKSIGVVHKIT--DDGDL-----RVAFCFLERLWVCKPGEMERVEAFRMGDRVQIKHSVVTPRWGWGNETLASRGVVYGVDADGRLRIQFARREGRLWIGDPADVEL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
331			88	11	0.923564
465	66		33		0.997452
691	75		25		1.0
696	11			88	0.923564
698			11	88	0.923564
700	88		11		0.923564
843	11		88		0.923564
844		11	88		0.923564
845	11			88	0.923564
887	85	14			0.993533
888	14	85			0.993533
944			83	16	0.994512
1559		11	88		0.999952
1562	88	11			0.999952
1566	88	11			0.999952
1567		11		88	0.999952
1568			88	11	0.999952
1571	88		11		0.999952
1575	11			88	0.999952
1576		11		88	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain