SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6597

Length: 1729 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6597 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TBP-associated factor 8 [Arabidopsis thaliana] gb\|AAK25888.1\|AF360178_1 unknown protein [Arabidopsis thaliana] emb\|CAB36711.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB80151.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAK64071.1\| unknown p	-	-	3.00004e-41	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Bromodomain transcription factor	IPR006565	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2L4

Fln msg:

Fln protein: MATNGGTPTTPPQATTAQTPTNNDKKPTKGVDAFGRAVARIAVAQICEGAGFQSCQQSALEALADISVRYLCDLGKAAQYYAGLAGRTECNAFDVIHAMEDMFAAQGFVGASDVIGHSVSGSGTVREIMQYTKRAEEIPFARPVPRFPVVKKRNLLPTFLQMKETPAHQHIPPWLPAFPDSHTYKNTPVWNERKTDPQVAKIEQARQRRQAERSLVSLQQRLASASGSSSLGLAMETDGKGRNPSPSPNPNPNSNNPFLAPPVGPEEKQVSPVKLPSVLARPAVKLPSVVEAFAPAIDAVKQGLDQVEELDGRRKNPRGSQALSDERPLVQFKFDFGKKAQMAAHATGAQRNETPLSSWFSRDEEIDDKKRRVEQILKEAMENPQDLVQL*

Protein Length: 392

Fln nts: CGGCCTCCTGTTCGAGTCCCGCCAGGGATCGTTTTAACGCAAAAATTTTCTTGACCACCCTCTCAGGAAATATTCAGTAGGGTTTTAACATAGAAAATCCCAGTGAGGCAGTTTCTATGGTTCAGTGACGAGG_-_ATGGCCACCAATGGAGGAACACCGACAACACCACCGCAGGCAACAACGGCACAGACGCCGACAAACAATGATAAAAAGCCCACTAAAGGAGTAGATGCCTTCGGCCGAGCGGTTGCGCGAATTGCAGTGGCACAGATATGCGAAGGTGCCGGGTTCCAATCCTGCCAGCAATCCGCCCTCGAAGCTCTGGCAGATATCTCCGTACGCTACCTCTGCGACCTCGGTAAGGCCGCTCAATACTACGCTGGCCTCGCGGGCAGAACGGAATGCAACGCCTTCGATGTGATACACGCCATGGAGGACATGTTTGCTGCGCAGGGCTTCGTGGGCGCCTCGGATGTGATCGGTCACTCGGTCTCGGGGTCGGGTACCGTGCGTGAAATCATGCAGTACACCAAACGAGCGGAAGAGATCCCGTTCGCTCGCCCTGTGCCGCGGTTCCCCGTGGTGAAAAAACGGAATCTTTTGCCTACATTTCTGCAGATGAAGGAAACCCCAGCGCATCAACACATTCCCCCATGGCTGCCCGCGTTCCCTGATTCGCACACTTATAAGAACACTCCTGTGTGGAACGAGCGGAAAACGGATCCTCAGGTGGCCAAGATCGAGCAGGCCAGGCAGCGGCGGCAGGCCGAGCGGTCGCTGGTGAGTTTGCAGCAGCGCCTGGCATCGGCTTCCGGGTCCTCTTCTCTAGGGCTCGCCATGGAAACAGATGGCAAGGGAAGAAACCCTAGCCCTAGCCCAAATCCCAACCCCAACTCTAATAACCCCTTTCTCGCTCCGCCCGTTGGTCCCGAGGAGAAACAGGTAAGCCCTGTCAAGCTTCCCTCGGTGCTGGCCCGTCCGGCGGTTAAACTCCCTTCTGTCGTGGAGGCCTTTGCTCCAGCCATTGATGCCGTCAAGCAGGGTCTTGATCAGGTCGAAGAGCTCGATGGGCGGAGGAAGAATCCTCGCGGGAGTCAGGCGCTGTCTGATGAGAGACCCCTTGTGCAATTTAAATTTGATTTTGGAAAGAAGGCACAAATGGCTGCCCATGCGACAGGAGCACAGCGAAATGAGACGCCGCTGAGTTCTTGGTTTAGCAGAGACGAGGAGATAGATGATAAGAAGAGAAGGGTAGAGCAGATATTGAAAGAAGCCATGGAAAACCCTCAAGACTTGGTACAGCTGTGA___AGATGGCACAAAATTTTGTCCTCCGTTGTGACTTGAAAATCAACCAAGTGGGTTGGGAATTCGCCGCATCTTGAGTGTTCCAATTGTGAATTTTTAACAACAGGTTGCGATGAGCTTCTGCTAGATTTGGAAAACAATGTATAAGTAGTATCGCTTGCTGGAGAAGAGTCTATCCGATTGCTCGTGATTTCAGACCTGGTTTGGATGAGTCGCAGCTAAATTTCATAGACATTTATGTATTCATCACTCACCGGAAGTAGGTGTATCTGCTATCTATCTGAATGTCAACATTATGTCAACATTTAATAAAAGAAATATTTATTGTGAAGGCCAGTCGCAATGGGAAACTTGTTCATTGGCTTGGTTTGAAAATCCTTACAGTTAATATGCTTACTTATTCGTTATAAATGCAGAGAATTAAAC

Fln Alignment:

Contig6597___DKKPTKGVDAFGRAVARIAVAQICEGAGFQSCQQSALEALADISVRYLCDLGKAAQYYAGLAGRTECNAFDVIHAMEDMFAAQGFVGASDVIGHSVSGSGTVREIMQYTKRAEEIXXXXXXXXXXXXXXRNLLPTFLQMKETPAHQHIPPWLPAFPDSHTYKNTPVWNERKTDPQVAKIXXXXXXXXXXRSLVSLQQRXXXXXXXXXXXXAMETDGKGRXXXXXXXXXXXXXXPFLAPPVGPEEKQVSPVKLPSVLARPAVKLPSVVEAFAPAIDAVKQGLDQVEELDGRRKNPRGSQALSDERPLVQFKFDFGKKAQMAAHATGAQRNETPLSSWFSRDEEIDDKKRRVEQILKEAMENPQDLVQL
A9P2L4______________EKKPDGGVDAFGRAVARIAVAQICEGAGFQSCQQSALEALADIAVRYLRDLGKAAHYYAGLAGRTECNAFDVIHAMEDMFAAQGFVGASDVISHSVSGSGTVREIMQYTNRAEEIPFARPVPRFPVVKKRELLPTFLQMKETPPHQHIPPWLPAFPDSHTYKSTPVWNERKTDPRMAKMEQARQRRKAERSLVSLQQRLASASGSSSLGLAMETDGKGK--NSSPSPNPNPNNPFLAPPVGPEEKQVSPVKIPPVLSRPALKLPSVLEAFAPAIDAVKQGLDQVEELDGRRKNPRGSQALSDERPLVQFKFDFGKKAQMAAHATGALRNETPLSSWFSRDEEMDDKKRRVEQILKEAMENPQDLVQL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1321	14	85			0.993533
1322		14	85		0.993533
1324	85			14	0.993533
1325			85	14	0.993533
1331	16		83		0.994512
1384		87		12	0.992554
1408		88		11	0.923564
1414		11	88		0.923564
1415	88			11	0.923564
1463	14			85	0.993533
1506	14			85	0.993533
1582	16			83	0.994512
1583	16			83	0.994512
1584		83		16	0.994512
1585		83	16		0.994512
1589	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain