SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6591

Length: 1352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6591 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR	-	-	0.0	50%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	55%
Sma3	Chromosome chr6 scaffold_28, whole genome shotgun sequence	-	-	7.264e-06	-

Source	Gene names
Sma3	At3g54280; AtBTAF1; CHR1532; CHR920; F24B22.240; GSVIVT00023016001; GSVIVT00023017001; OJ9003_G05.21; OsJ_05476; PHYPADRAFT_184534; POPTRDRAFT_823728; RCOM_1515310;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54280.2	" RGD3 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases chr3:20092361-20104153 FORWARD LENGTH=2129"	46%
RefSeq	Arabidopsis thaliana	NP_190996.3	TATA box binding protein associated factor-like protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002319739.1	chromatin remodeling complex subunit [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: I1LNP6

Fln msg: Distance to subject end: 1683 aas, your sequence is shorter than subject: 369 - 2046

Fln protein: MAQQSSRLQRLLTLLDTGSTQTTRRTAARQIGEIAKLHPQDLSALLKKVSQYLRSKNWDTRVAAAQAIGAIAENVKHISINEIRDNAESELLKLGIDQNIKDLMVASWNLVSNSPTGLSFSSLDINKVLEFGGALLASGGQEYDIAIDNSKNSAERLARQKENLSRRLGLDVCEDYMDVNDMIRDEDLMVHKLPSHGNGAQHKYCAAQSGTQHIQKLVTNMVPGYFPRKLSARERNLLKRKAKVNVNHSKGWCDDDDTEEPVPKNKVTVKPVSMEQHPKNNKVLMERMVEEESLEQPSDGRWPFIYFVEQLIHDIFDPIWEIRHGSIMALREILSYQAASAGVSLPDLNTKGAWRHEMEENKMNHSLKR

Protein Length: 370

Fln nts: TTTCGGTTAATCATGCACAAGCATTGCTTATCCCGTTGGCTCCAAGGGCTTCTAGCATAATGTGCGAGAAAATGCACTAATTTCTGGACCGGTTATTGAATACGAGGGTTTCGGTTCGTAAAATGTTCAATTAGCCGTCTCTTGCGTCAGAAGCGGCAACATTAGGGGTCCTTGAAGGATTTTGTTGCCCGTGCTTGCTCCGGAAGCCAGCTCGAATGAAATACAGCGTAAATTTATTGACGTT_-_ATGGCTCAGCAGTCGTCTCGTCTTCAACGTCTGCTCACGCTCCTGGATACTGGCTCGACGCAGACAACGAGGCGTACAGCTGCACGGCAGATAGGAGAAATTGCAAAACTGCACCCCCAGGATCTAAGTGCACTCTTGAAGAAGGTTTCTCAGTATCTTCGAAGCAAGAATTGGGATACAAGGGTTGCTGCAGCTCAGGCTATTGGTGCCATTGCAGAAAATGTCAAACATATATCCATTAATGAAATCAGAGACAATGCTGAATCTGAGTTGTTAAAATTGGGTATCGATCAGAATATTAAAGACCTTATGGTAGCAAGTTGGAATTTGGTCTCAAATTCTCCAACAGGTCTTTCTTTTAGCAGCTTGGACATAAATAAAGTCCTGGAATTTGGAGGTGCATTGCTTGCATCAGGAGGACAGGAATATGATATTGCAATAGATAACAGTAAGAATAGTGCTGAGCGCTTGGCTCGTCAGAAGGAAAATCTTAGCCGTCGATTAGGATTAGATGTCTGTGAGGATTACATGGATGTTAATGATATGATACGAGATGAGGATCTCATGGTGCATAAATTGCCTTCCCATGGAAATGGAGCACAGCATAAATACTGTGCAGCTCAATCTGGCACCCAGCATATTCAGAAACTTGTCACAAATATGGTTCCAGGATATTTTCCTAGGAAATTAAGTGCAAGGGAACGTAATTTGTTGAAACGCAAAGCCAAGGTCAATGTTAACCACTCAAAAGGTTGGTGTGATGATGATGACACTGAGGAGCCAGTTCCAAAGAATAAAGTGACTGTAAAACCTGTATCGATGGAACAACACCCCAAAAACAACAAGGTTTTAATGGAGCGTATGGTTGAAGAAGAGAGTCTAGAGCAACCCAGTGATGGGAGATGGCCATTTATATACTTTGTAGAGCAGCTTATTCATGATATATTTGATCCAATTTGGGAGATACGTCATGGAAGCATAATGGCTTTGAGAGAAATTTTGAGTTACCAGGCAGCATCTGCGGGAGTGTCATTGCCTGATTTAAACACTAAAGGTGCATGGCGTCATGAAATGGAAGAGAACAAAATGAACCATTCGCTCAAACGGG

Fln Alignment:

Contig6591___DTGSXXXXXXXXXXQIGEIAKLHPQDLSALLKKVSQYLRSKNWDTRVXXXXXXXXXAENVKHISINEIRDNAESELLKLGIDQNIKDLMVASWNLVSNSPTGLSFSSL-DINKVLEFGGALLASGGQEYDIAIDNSKNSAERLARQKENLSRRLGLDVCEDYMDVNDMIRDEDLMVHKLPSHGNGAQHKYCAAQSGTQHIQKLVTNMVPGYFPRKLSARERNLLKRKAKVN-VNHSKGWCDDDDTEEXXXXXXXXXXXVSMEQHPKNNKVLMERMVEEESLEQPSDGRWPFIYFVEQLIHDIFDPIWEIRHGSIMALREILSYQAASAGVSLPDLNTKGAWRHEMEENKMNHSLKR
I1LNP6______________DTGSNQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFACVVSKMSENGISCSIEDL--CAWPYLQSKVTGSSFRRFFDMNKVLEFG-ALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRLFTSCS-SHNIQKMVSNMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTE--VSGGQNLTSKGTCPDSVNYSKAFMSVNHDEDGIEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVFKPDSSMGGTLFIELEDKSIPNILKR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
845	87		12		0.992554
916		10	90		0.90298
1225		11		88	0.923564
1226		11	88		0.923564
1227	88	11			0.923564
1229		88		11	0.923564
1318	66	33			0.997452
1319	66	33			0.997452
1321	33		66		0.997452
1322			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
339	350	TCA TCA TCA TCA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain