SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6589

Length: 2652 nt

UniGene Fasta

>sp_v3.0_unigene6589
CAGTAGTTGATTCCGAAGTTGTTATTGCTTCAAATATTTTAAAAAACTGCTCCTGTCAAAGTGGCATTAGTTGATTCCGAAGTTGTTATTGCTTCAAATATTTTAAAAAACTGCTCCTGTCAAAGTGGCATTAGTGGAATTGTTTCACCAGGTTATTCCAGGATATTCCTTTGAAATTTGCCACCTGCCAAATTGGTGGCCTGAGAATCTCCATGCTCTTCGGCAAATCCATTTTCTAGGTGTTTGAGATTTCCACCATCGTTATCGATATATCTCTGAGAAAATTACCCCCAGGACTCCGAATAAAAAATCGTCAAGTGCTTAGCCGCGGTGGGTTTTGAAAAACCCAAAACGATATCTGTACGACTGGTATTCGACCCGCAAGGATCTCATATCCTATATTCATTGCATATTCCACCGTATAGAACTCTATCGGCTATTGGGTCTGCTCTGCAATGGCCATGACAAGCTCAACAATGTTGCAGGGATCATCGTTTCTCCAAAATAAGCGAACGGGCATTCAATCCAATAAAAAATGGCAAATGGGTTCTCAGTACAAGTCAGGGCGGCAAGTGGTTTTTCAGCACAGGCAAAGATGGCTCAGCCCAGGCCCGAAAATCACAACCTTAAACCTCAGAAACCCTGGTTGTGTGCGCGCCGAACCACAAGCGGTCTCAGCAGACCTTGAGCCAGATGCCAAATCAGCGCCCCGTGAAAGCAACGGAACAAGCGGTAGGAGGAGGCATAGTGACCAGAATATCAGGGAAGAAGCTAGGGTTCTTGGCACCGGTGTGAGTGATGGTTTCTCTGCGAAATATGTACCCTTCTGTTCAGGGTCCAAGACGGATGAAGAGTATTCGCTTGACGAAGTCGTGTACAGGAGTCGATCCGGCGCCCTGCTGGACGTTCAACACGATATGGATGCTTTAAAAAGGTATGATGGCAAATACTGGAGAGGCCTCTTTGATTCTAGAGTAGGAAAGACCACCTGGCCTTATGGTTCAGGTGTTTGGAGTAAAAAAGAATGGGTTCTGCCTGAAATAGACAATGATCACATTGTTAGTGCATTTGAAGGGAATTCTAATCTGTTCTGGGCAGAGAGGTACGGGAAAGAGATATTGGGCATGAATGATCTGTGGGTGAAACACTGTGGGATCAGTCACACAGGGAGTTTTAAGGATCTGGGGATGACTGTTCTCGTTAGTCAGGTTAATAGGCTCAGAAAGATGAATAAGCCCGTTGTTGGTGTGGGTTGTGCTTCGACTGGCGATACTTCGGCTGCGTTATCAGCATATTGTGCTGCTGCAGGGATACCTGCTATTGTATTTCTGCCTGCAAATCGCATCTCGATTGCACAGTTAGTGCAGCCGATTGCCAATGGTGCGTTGGTGCTCAGTCTCGATACTGATTTCGATGGGTGTATGAGGCTGATCCGGGAGGTGACCGCAGAGTTGCCGATCTATCTGGCGAATTCGCTCAATAGTCTGCGGTTGGAGGGGCAGAAGACTGCAGCGATCGAGATCCTGCAGCAGTTTGATTGGGAGGTGCCAGATTGGGTCATTGTGCCTGGCGGGAACTTGGGAAATATCTATGCCTTTTATAAGGGGTTCCAGATGTGCAAGGAGTTGGGCCTGGTGAATGATATTCCTCGCCTTGTCTGTGCACAGGCTGCCAACGCCAATCCTCTGTATTTGTACTATAAGTCCGGTTGGAATGAATTTAAACCTGTGACTGCCAATTCCACCTTTGCCTCGGCCATACAGATTGGTGATCCCGTTTCAATCGATCGAGCTGTATATGCACTGAAGAATTCAGATGGAATAGTCGAGGAGGCTACCGAGGAGGAATTGATGGATGCTGCAGCTCTGGCAGACCTGAAAGGTATGTTTATATGCCCTCACACTGGAGTGGCTCTTGCAGCATTGACAAAGCTCAGAAGTAAGGGTATTATTGGGCTTAATGACAGGACCGTTGTTGTCAGTACTGCTCATGGGCTGAAGTTTACGCAATCCAAGATTGACTATCACTCAAAAGCGATTCATGACATGAAATGCGAATATGCAAACCCTCCCTTAACGGTAAAAGCAGATTTTTCTTCTGTTATGGATGTTTTGAAGAAGAAACTAGCTCTTCTTTGAGTCGTGGATACTGGTTATGGGGACAGGCGTTGGTGAACTCAACTATTTTCACAAGGCCAAAGTTTCTTATGCTTTCTCAAATGGTGCTCTGTGTTGGTTTATTTGACTCGCTTCTCTGTGGCTCTGCCGTATTCATTGAGCTATCAGCATATCGAGGGGGGATTTTTCCTTTCCGACATACGAGAGCCATTGTTTTCTGTTAATGTTAACGTCATGCTGAGGCAGTTCACTTCTCTTGGCTAATCATGGTATCGAGTTTAGCAGTAAAAATTTCACAGTTGAATCCTGTGACACGTGCAATGAGATCAGATTAGATAGAAAATAGTTTTAAGCCACGTTTTCAGTCATTTAAACCATAAATTTTGACTTAAATGTTTTGACCATATCACAGTAAATGCAGATTTATTTTTGTTGGATTTTTTTGAAGTTAATATATTTGAAGTTTCATCTCTTATGTCTGAAACTTCTCCTAGTATAAAAGGTGAAGAGCAGTGAGGCAGATTATCACCACTAT

Ace file of the UniGene sp_v3.0_unigene6589

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Threonine synthase, putative n=2 Tax=fabids RepID=B9RK44_RICCO	-	-	74%
FL-Next	sp=Threonine synthase, chloroplastic; Solanum tuberosum (Potato).	-	-	82%
Sma3	Chromosome chr4 scaffold_6, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00032716001;

Source	GOs	Term	Type	Identity
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	threonine synthase activity	GO:0004795	Molecular Function	-
Sma3	threonine biosynthetic process	GO:0009088	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Threonine synthase	IPR004450	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29840.1	MTO2, TS Pyridoxal-5'-phosphate-dependent enzyme family protein chr4:14599434-14601014 REVERSE LENGTH=526	77%
RefSeq	Arabidopsis thaliana	NP_194713.1	threonine synthase 1 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002329027.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9MT28

Fln msg: your sequence is longer than subject: 561 - 519

Fln protein: MAMTSSTMLQGSSFLQNKRTGIQSNKKWQMGSQYKSGRQVVFQHRQRWLSPGPKITTLNLRNPGCVRAEPQAVSADLEPDAKSAPRESNGTSGRRRHSDQNIREEARVLGTGVSDGFSAKYVPFCSGSKTDEEYSLDEVVYRSRSGALLDVQHDMDALKRYDGKYWRGLFDSRVGKTTWPYGSGVWSKKEWVLPEIDNDHIVSAFEGNSNLFWAERYGKEILGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNKPVVGVGCASTGDTSAALSAYCAAAGIPAIVFLPANRISIAQLVQPIANGALVLSLDTDFDGCMRLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVNDIPRLVCAQAANANPLYLYYKSGWNEFKPVTANSTFASAIQIGDPVSIDRAVYALKNSDGIVEEATEEELMDAAALADLKGMFICPHTGVALAALTKLRSKGIIGLNDRTVVVSTAHGLKFTQSKIDYHSKAIHDMKCEYANPPLTVKADFSSVMDVLKKKLALL*

Protein Length: 562

Fln nts: CAGTAGTTGATTCCGAAGTTGTTATTGCTTCAAATATTTTAAAAAACTGCTCCTGTCAAAGTGGCATTAGTTGATTCCGAAGTTGTTATTGCTTCAAATATTTTAAAAAACTGCTCCTGTCAAAGTGGCATTAGTGGAATTGTTTCACCAGGTTATTCCAGGATATTCCTTTGAAATTTGCCACCTGCCAAATTGGTGGCCTGAGAATCTCCATGCTCTTCGGCAAATCCATTTTCTAGGTGTTTGAGATTTCCACCATCGTTATCGATATATCTCTGAGAAAATTACCCCCAGGACTCCGAATAAAAAATCGTCAAGTGCTTAGCCGCGGTGGGTTTTGAAAAACCCAAAACGATATCTGTACGACTGGTATTCGACCCGCAAGGATCTCATATCCTATATTCATTGCATATTCCACCGTATAGAACTCTATCGGCTATTGGGTCTGCTCTGCA_-_ATGGCCATGACAAGCTCAACAATGTTGCAGGGATCATCGTTTCTCCAAAATAAGCGAACGGGCATTCAATCCAATAAAAAATGGCAAATGGGTTCTCAGTACAAGTCAGGGCGGCAAGTGGTTTTTCAGCACAGGCAAAGATGGCTCAGCCCAGGCCCGAAAATCACAACCTTAAACCTCAGAAACCCTGGTTGTGTGCGCGCCGAACCACAAGCGGTCTCAGCAGACCTTGAGCCAGATGCCAAATCAGCGCCCCGTGAAAGCAACGGAACAAGCGGTAGGAGGAGGCATAGTGACCAGAATATCAGGGAAGAAGCTAGGGTTCTTGGCACCGGTGTGAGTGATGGTTTCTCTGCGAAATATGTACCCTTCTGTTCAGGGTCCAAGACGGATGAAGAGTATTCGCTTGACGAAGTCGTGTACAGGAGTCGATCCGGCGCCCTGCTGGACGTTCAACACGATATGGATGCTTTAAAAAGGTATGATGGCAAATACTGGAGAGGCCTCTTTGATTCTAGAGTAGGAAAGACCACCTGGCCTTATGGTTCAGGTGTTTGGAGTAAAAAAGAATGGGTTCTGCCTGAAATAGACAATGATCACATTGTTAGTGCATTTGAAGGGAATTCTAATCTGTTCTGGGCAGAGAGGTACGGGAAAGAGATATTGGGCATGAATGATCTGTGGGTGAAACACTGTGGGATCAGTCACACAGGGAGTTTTAAGGATCTGGGGATGACTGTTCTCGTTAGTCAGGTTAATAGGCTCAGAAAGATGAATAAGCCCGTTGTTGGTGTGGGTTGTGCTTCGACTGGCGATACTTCGGCTGCGTTATCAGCATATTGTGCTGCTGCAGGGATACCTGCTATTGTATTTCTGCCTGCAAATCGCATCTCGATTGCACAGTTAGTGCAGCCGATTGCCAATGGTGCGTTGGTGCTCAGTCTCGATACTGATTTCGATGGGTGTATGAGGCTGATCCGGGAGGTGACCGCAGAGTTGCCGATCTATCTGGCGAATTCGCTCAATAGTCTGCGGTTGGAGGGGCAGAAGACTGCAGCGATCGAGATCCTGCAGCAGTTTGATTGGGAGGTGCCAGATTGGGTCATTGTGCCTGGCGGGAACTTGGGAAATATCTATGCCTTTTATAAGGGGTTCCAGATGTGCAAGGAGTTGGGCCTGGTGAATGATATTCCTCGCCTTGTCTGTGCACAGGCTGCCAACGCCAATCCTCTGTATTTGTACTATAAGTCCGGTTGGAATGAATTTAAACCTGTGACTGCCAATTCCACCTTTGCCTCGGCCATACAGATTGGTGATCCCGTTTCAATCGATCGAGCTGTATATGCACTGAAGAATTCAGATGGAATAGTCGAGGAGGCTACCGAGGAGGAATTGATGGATGCTGCAGCTCTGGCAGACCTGAAAGGTATGTTTATATGCCCTCACACTGGAGTGGCTCTTGCAGCATTGACAAAGCTCAGAAGTAAGGGTATTATTGGGCTTAATGACAGGACCGTTGTTGTCAGTACTGCTCATGGGCTGAAGTTTACGCAATCCAAGATTGACTATCACTCAAAAGCGATTCATGACATGAAATGCGAATATGCAAACCCTCCCTTAACGGTAAAAGCAGATTTTTCTTCTGTTATGGATGTTTTGAAGAAGAAACTAGCTCTTCTTTGA___GTCGTGGATACTGGTTATGGGGACAGGCGTTGGTGAACTCAACTATTTTCACAAGGCCAAAGTTTCTTATGCTTTCTCAAATGGTGCTCTGTGTTGGTTTATTTGACTCGCTTCTCTGTGGCTCTGCCGTATTCATTGAGCTATCAGCATATCGAGGGGGGATTTTTCCTTTCCGACATACGAGAGCCATTGTTTTCTGTTAATGTTAACGTCATGCTGAGGCAGTTCACTTCTCTTGGCTAATCATGGTATCGAGTTTAGCAGTAAAAATTTCACAGTTGAATCCTGTGACACGTGCAATGAGATCAGATTAGATAGAAAATAGTTTTAAGCCACGTTTTCAGTCATTTAAACCATAAATTTTGACTTAAATGTTTTGACCATATCACAGTAAATGCAGATTTATTTTTGTTGGATTTTTTTGAAGTTAATATATTTGAAGTTTCATCTCTTATGTCTGAAACTTCTCCTAGTATAAAAGGTGAAGAGCAGTGAGGCAGATTATCACCACTAT

Fln Alignment:

Contig6589___PDAKSAPRESNGTSGRRRHSDQNIREEARVLGTGVSDGFSAKYVPFCSGSKTDEEYSLDEVVYRSRSGALLDVQHDMDALKRYDGKYWRGLFDSRVGKTTWPYGSGVWSKKEWVLPEIDNDHIVSAFEGNSNLFWAERYGKEILGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNKPVVGVGCASTGDTSXXXXXXXXXXGIPAIVFLPANRISIAQLVQPIANGALVLSLDTDFDGCMRLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFQMCKELGLVNDIPRLVCAQAANANPLYLYYKSGWNEFKPVTANSTFASAIQIGDPVSIDRAVYALKNSDGIVXXXXXXXXXXXXXXXXXKGMFICPHTGVALAALTKLRSKGIIGLNDRTVVVSTAHGLKFTQSKIDYHSKAIHDMKCEYANPPLTVKADFSSVMD
Q9MT28______________PIKATATNDAISQQKHRRPADENIREEARRHCS--SHNFSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQIGDPVSIDRAVFALQQCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNSGVIAPTDRTVVVSTAHGLKFTQSKIDYHSKEIKDMECRFANPPVEVKADFGSVMD

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
339	20		80		0.995493
341			20	80	0.995493
342			20	80	0.995493
343			20	80	0.995493
442			16	83	0.994512
453		88		11	0.923564
558			72	27	1.0
588	10		90		0.90298
993		87		12	0.992554
1382	90			10	0.90298
1383		10		90	0.90298
1923	90		10		0.90298
2314		10		90	0.90298
2344	87	12			0.992554
2416		80		20	0.995493
2419	20			80	0.995493
2478	25	75			0.996473
2479	25		75		0.996473
2480	25			75	0.996473
2536	87	12			0.992554
2539			75	12	0.975346
2542		14	85		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain