SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6568

Length: 3454 nt

UniGene Fasta

>sp_v3.0_unigene6568
ATGGGGAGATCTGACTAGGTCAGCATAGTTGAGTGGAGTGGTGGTTGAATCTAAGCCACCTTGCCAATCGTAGAAACTAAGCTACAGCCGCTCTCTGTTAGCTAAACTTGGCTCATCACAGCAGTTGGGCGGAACCTATCAGAGATTGCGAATATTTAGCTACAAAAGGCCCAGAGCTCCCCTACAATGCCAAAGCAGGTTCAGCACTGTGTGGAGCAGCAATAAGCAGCAGCAGCATTGCTACTGCAGACAGTGCTGTATTGGTTGTTTGTGAAAAAATCCAAATCCAGATTGGATTAGTACACTTCAAATGCCACCTGCTATCAAGAGGCATTAAGGTAGAGGGTATAGAATATTTGAGTGAGAGAGAAAGGCCTAGGCTTGCATGTCAAACGGCTGCCTCTACATTGCAGAAAGTGTCCAGATCTCATTGCTCCTGCAGGTAGAGTGGAGCCGGAGCCGTTTTGACTGATCAGTATTACTGTTGTTTCCATGTCCCAATAAGAATAGACTGTTAACGAATGAATTTCAAAACCCACATTGCCGAATTCAGTGGGGTATAACTGTCAGGGACAATTCATTTCTTGTTGTCTTCATTCATTAACAAGGGACTCAGAGGCCATGGGCTTGTAGGAGCAAGGGGAGGAGAATAATAGGAGGAAGAAGATCTCTGATATCCATACTTATCAGGGCTGGGCAGGCCAGATCCAGATCTTTGGCAAGGTATATTGGGCTGCGGTACAATTTGGTGCAGAGGATCTAGGTGGCCAGCCTGGTTTTCTGATTCAATATGGATCGGTTATCTTCTGCAAATCTCCTTCCAGAGTCATTTCCGAGCAATGACATGACCGAACAGCTTGCATTGATATGGAGGCAGATTAGAGCGCCCCTTATTGCTCCGTTGCTGAGATTTGCTGTTGGTATTTGCTTGATAATGTCTCTGATGCTGTTTATTGAGAGGGTGTACATGGCTGTTGTTATAGTGCTGGTGAAGCTGTTTGGGAAGAGGCCTGAGAAGAGATACAAATGGGAGCCTATAAGAGATGACATAGAGCTTGGAAACAGTGCATATCCAATGGTTCTGGTGCAGATTCCCATGTACAATGAAAAAGAGGTTTATCAGCTTTCCATTGGAGCAGCTTGTGGGCTTTCATGGCCTTCAGACAGGATTATCATTCAAGTTCTTGATGATTCTACTGACCCAGCTATCAAGGAGTTGGTAACAATGGAGTGCCAGAGATGGGCTAGCAAGGGAATAAACATCAAATATGAGATCAGAGACAACAGGAATGGTTACAAGGCGGGTGCTCTGAAAGAAGGAATGAAACGCAGCTATGTGAAGGAATGTGACTATGTAGCCATCTTCGATGCAGATTTCCAGCCAGAACCAGACTACCTATGGCGAACGATTCCATTCCTGGTGCACAATCCTGAACTGGCTCTTGTTCAGGCCCGTTGGAAATTCGTGAATTCGGATGAATGCTTGATGACAAGAATGCAGGAGATGTCCTTGGATTATCATTTCACTGTCGAACAAGAAGTGGGCTCTTCTACTCACGCCTTCTTTGGGTTCAACGGTACTGCTGGAGTTTGGCGAATCAATGCTCTAAATGAAGCTGGTGGCTGGAAAGACCGCACAACTGTGGAAGATATGGATTTGGCTGTTCGGGCAAGTTTGAAGGGATGGAAGTTTGTTTTCGTGGGTGATCTTAAAGTCAAGAATGAATTACCTAGTACCTTCAAAGCATACCGCTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCAAATTTGTTTAGAAAGATGGTCAAGGAGATCCTTAGAAACAAGAAAGTTACACCGTGGAAGAAGTTCCATGTCATTTATGCCTTCTTTTTTGTAAGGAAGATTGTGGCTCACATTGTCACATTCGCCTTTTACTGTGTTGTGATTCCTGCAACTGTACTTGTTCCGGAAGTCCAAGTACCCAAATGGGGGGCTGTTTACATTCCTTCAATCATCACTTTACTAAATGCAGTAAGCACTCCCAAATCTCTGCATTTGCTTGTTTTCTGGATCTTGTTTGAAAATGTGATGTCTCTGCACCGAACCAAGGCAACTTTCATTGGATTATTAGAAGCTGGCCGTGTCAATGAATGGGTTGTGACAGAAAAGCTTGGAGATGCCATGAAGCATAAATCTGGGAAGCAGATAAAAAAATCTCGCTCAAGAATTGGAGAAAGACTCCACGTCTTGGAACTTTTCGCTGGCGTCTATCTCTTCTTCTGTGCATCTTATGATCTCGCATTTGGAAAAAATCACTTCTATATCTATCTTTATCTGCAAGCTGCAGCGTTCTTCGTGATGGGATTTGGATACATTGGAACATTTGTACCAACATCCTAGGAGGCTAGGACTACATAAAACGGAGGTGCCAGCCTGTTCTGTCTCTGTGTGGCACAGGCCTGATTGGAGTTCAATTATCTATGTATAGATTGTATCTTCTCATTCTTTTTAGGAGGATAAGTACATGGTATAGTCCCCAAAGGGACAGTGCTTCTCATGCATATCTGTTAGCTTATGCGAGAAGTCAATTTTAGCGCTATGTATGTTACCAATAAAATCAGATTCAGGTTGTTTCTCTGATGAGGGTGTATTGGGTGTTTCAAATAGTCATTCAATGGTGATTAATCTCAGATGCTCCTGTACTTGAGGCAAGAGTCAAGATGGTTTAGTCTTTAGTATATTTAAGTTAAGATCTGCTTAACTTTGAAGACGGGATGAGATGCATTTTATGGAACTGCATTACCAGAAAAAAATATCTTGAAATTAGTTTGTTGTATTCTTTGTAACAGAGGGAAGGATATCATGCAGAGGACTCAGCTCAAAGGAGACACTTGTAATCAAACTGGCCTTTACATCCTTAGTTTCAGAGGTAATTGATTCCTGAGAGATTCTTTGTTAGGTCAGCGCCATTCTTAAGATTTATAAACATGCTCGTGGCAATGTGTTACACATAAATTAAAGGTTGTTGAAGTTGTGAGGAAATTGTGATAGGCAACTGTTATGAAAGAGAGATAAGATAGCTACTCGGTGGGAAGTTGAGAGAGAAGATTGATGGATTTCTTCTTTCGTTGCCCCTCCGTACCCTTTGTCTATGATGATAAAAATATAGAAATTTGGATCTGACTATCTGTTTCATGTAATGTGAGTGGGGAAACCCATATATATGGCCTGGCCTGCAATAAAATTCTTTGGATTATCACTTTGTCCGAAATGTGTAAATGATTGTCTGAAATTATTGAGCAATTAATGGAACTTGAATTATATTTTTTTCCTTTGAAAATTTCAGTTTCAGGTTTGGATTGAAATTGAAGCTTTGCAAATGTGTTCTTCCAAGATTGTAAAGTGGCGTTTGAGTGCCAATCCGTGGAATGAATGATTATGTCTGCAAATATGCAGTTGCAGGGCTAATTT

Ace file of the UniGene sp_v3.0_unigene6568

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like A1 n=2 Tax=Pinaceae RepID=A3QT94_PINTA	-	-	98%
FL-Next	tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine).	-	-	98%
Sma3	Cellulose synthase-like A1	-	-	-

Source	Gene names
Sma3	CslA1;

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03760.1	ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 Nucleotide-diphospho-sugar transferases superfamily protein chr5:985910-990087 REVERSE LENGTH=533	77%
RefSeq	Arabidopsis thaliana	NP_195996.1	glucomannan 4-beta-mannosyltransferase 9 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002315357.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A3QT94

Fln msg:

Fln protein: MDRLSSANLLPESFPSNDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKECDYVAIFDADFQPEPDYLWRTIPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVKEILRNKKVTPWKKFHVIYAFFFVRKIVAHIVTFAFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGKNHFYIYLYLQAAAFFVMGFGYIGTFVPTS*

Protein Length: 532

Fln nts: ATGGGGAGATCTGACTAGGTCAGCATAGTTGAGTGGAGTGGTGGTTGAATCTAAGCCACCTTGCCAATCGTAGAAACTAAGCTACAGCCGCTCTCTGTTAGCTAAACTTGGCTCATCACAGCAGTTGGGCGGAACCTATCAGAGATTGCGAATATTTAGCTACAAAAGGCCCAGAGCTCCCCTACAATGCCAAAGCAGGTTCAGCACTGTGTGGAGCAGCAATAAGCAGCAGCAGCATTGCTACTGCAGACAGTGCTGTATTGGTTGTTTGTGAAAAAATCCAAATCCAGATTGGATTAGTACACTTCAAATGCCACCTGCTATCAAGAGGCATTAAGGTAGAGGGTATAGAATATTTGAGTGAGAGAGAAAGGCCTAGGCTTGCATGTCAAACGGCTGCCTCTACATTGCAGAAAGTGTCCAGATCTCATTGCTCCTGCAGGTAGAGTGGAGCCGGAGCCGTTTTGACTGATCAGTATTACTGTTGTTTCCATGTCCCAATAAGAATAGACTGTTAACGAATGAATTTCAAAACCCACATTGCCGAATTCAGTGGGGTATAACTGTCAGGGACAATTCATTTCTTGTTGTCTTCATTCATTAACAAGGGACTCAGAGGCCATGGGCTTGTAGGAGCAAGGGGAGGAGAATAATAGGAGGAAGAAGATCTCTGATATCCATACTTATCAGGGCTGGGCAGGCCAGATCCAGATCTTTGGCAAGGTATATTGGGCTGCGGTACAATTTGGTGCAGAGGATCTAGGTGGCCAGCCTGGTTTTCTGATTCAAT_-_ATGGATCGGTTATCTTCTGCAAATCTCCTTCCAGAGTCATTTCCGAGCAATGACATGACCGAACAGCTTGCATTGATATGGAGGCAGATTAGAGCGCCCCTTATTGCTCCGTTGCTGAGATTTGCTGTTGGTATTTGCTTGATAATGTCTCTGATGCTGTTTATTGAGAGGGTGTACATGGCTGTTGTTATAGTGCTGGTGAAGCTGTTTGGGAAGAGGCCTGAGAAGAGATACAAATGGGAGCCTATAAGAGATGACATAGAGCTTGGAAACAGTGCATATCCAATGGTTCTGGTGCAGATTCCCATGTACAATGAAAAAGAGGTTTATCAGCTTTCCATTGGAGCAGCTTGTGGGCTTTCATGGCCTTCAGACAGGATTATCATTCAAGTTCTTGATGATTCTACTGACCCAGCTATCAAGGAGTTGGTAACAATGGAGTGCCAGAGATGGGCTAGCAAGGGAATAAACATCAAATATGAGATCAGAGACAACAGGAATGGTTACAAGGCGGGTGCTCTGAAAGAAGGAATGAAACGCAGCTATGTGAAGGAATGTGACTATGTAGCCATCTTCGATGCAGATTTCCAGCCAGAACCAGACTACCTATGGCGAACGATTCCATTCCTGGTGCACAATCCTGAACTGGCTCTTGTTCAGGCCCGTTGGAAATTCGTGAATTCGGATGAATGCTTGATGACAAGAATGCAGGAGATGTCCTTGGATTATCATTTCACTGTCGAACAAGAAGTGGGCTCTTCTACTCACGCCTTCTTTGGGTTCAACGGTACTGCTGGAGTTTGGCGAATCAATGCTCTAAATGAAGCTGGTGGCTGGAAAGACCGCACAACTGTGGAAGATATGGATTTGGCTGTTCGGGCAAGTTTGAAGGGATGGAAGTTTGTTTTCGTGGGTGATCTTAAAGTCAAGAATGAATTACCTAGTACCTTCAAAGCATACCGCTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCAAATTTGTTTAGAAAGATGGTCAAGGAGATCCTTAGAAACAAGAAAGTTACACCGTGGAAGAAGTTCCATGTCATTTATGCCTTCTTTTTTGTAAGGAAGATTGTGGCTCACATTGTCACATTCGCCTTTTACTGTGTTGTGATTCCTGCAACTGTACTTGTTCCGGAAGTCCAAGTACCCAAATGGGGGGCTGTTTACATTCCTTCAATCATCACTTTACTAAATGCAGTAAGCACTCCCAAATCTCTGCATTTGCTTGTTTTCTGGATCTTGTTTGAAAATGTGATGTCTCTGCACCGAACCAAGGCAACTTTCATTGGATTATTAGAAGCTGGCCGTGTCAATGAATGGGTTGTGACAGAAAAGCTTGGAGATGCCATGAAGCATAAATCTGGGAAGCAGATAAAAAAATCTCGCTCAAGAATTGGAGAAAGACTCCACGTCTTGGAACTTTTCGCTGGCGTCTATCTCTTCTTCTGTGCATCTTATGATCTCGCATTTGGAAAAAATCACTTCTATATCTATCTTTATCTGCAAGCTGCAGCGTTCTTCGTGATGGGATTTGGATACATTGGAACATTTGTACCAACATCCTAG___GAGGCTAGGACTACATAAAACGGAGGTGCCAGCCTGTTCTGTCTCTGTGTGGCACAGGCCTGATTGGAGTTCAATTATCTATGTATAGATTGTATCTTCTCATTCTTTTTAGGAGGATAAGTACATGGTATAGTCCCCAAAGGGACAGTGCTTCTCATGCATATCTGTTAGCTTATGCGAGAAGTCAATTTTAGCGCTATGTATGTTACCAATAAAATCAGATTCAGGTTGTTTCTCTGATGAGGGTGTATTGGGTGTTTCAAATAGTCATTCAATGGTGATTAATCTCAGATGCTCCTGTACTTGAGGCAAGAGTCAAGATGGTTTAGTCTTTAGTATATTTAAGTTAAGATCTGCTTAACTTTGAAGACGGGATGAGATGCATTTTATGGAACTGCATTACCAGAAAAAAATATCTTGAAATTAGTTTGTTGTATTCTTTGTAACAGAGGGAAGGATATCATGCAGAGGACTCAGCTCAAAGGAGACACTTGTAATCAAACTGGCCTTTACATCCTTAGTTTCAGAGGTAATTGATTCCTGAGAGATTCTTTGTTAGGTCAGCGCCATTCTTAAGATTTATAAACATGCTCGTGGCAATGTGTTACACATAAATTAAAGGTTGTTGAAGTTGTGAGGAAATTGTGATAGGCAACTGTTATGAAAGAGAGATAAGATAGCTACTCGGTGGGAAGTTGAGAGAGAAGATTGATGGATTTCTTCTTTCGTTGCCCCTCCGTACCCTTTGTCTATGATGATAAAAATATAGAAATTTGGATCTGACTATCTGTTTCATGTAATGTGAGTGGGGAAACCCATATATATGGCCTGGCCTGCAATAAAATTCTTTGGATTATCACTTTGTCCGAAATGTGTAAATGATTGTCTGAAATTATTGAGCAATTAATGGAACTTGAATTATATTTTTTTCCTTTGAAAATTTCAGTTTCAGGTTTGGATTGAAATTGAAGCTTTGCAAATGTGTTCTTCCAAGATTGTAAAGTGGCGTTTGAGTGCCAATCCGTGGAATGAATGATTATGTCTGCAAATATGCAGTTGCAGGGCTAATTT

Fln Alignment:

Contig6568___MDRLSSANLLPESFPSNDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKECDYVAIFDADFQPEPDYLWRTIPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVKEILRNKKVTPWKKFHVIYAFFFVRKIVAHIVTFAFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGKNHFYIYLYLQAAAFFVMGFGYIGTFVPTS
A3QT94______________MDRLSSANLLPESFPSNDMTEQLALIWRQIRAPLIAPLLRFAVGICLIMSLMLFIERVYMAVVIVLVKLFGKRPEKRYKWEPIRDDIELGNSAYPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPAIKELVTMECQRWASKGINIKYEIRDNRNGYKAGALKEGMKRSYVKDCDYVAIFDADFQPEPDYLWRTVPFLVHNPELALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRINALNEAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEILRNKRVTPWKKFHVIYAFFFVRKIVAHIVTFTFYCVVIPATVLVPEVQVPKWGAVYIPSIITLLNAVSTPKSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNEWVVTEKLGDAMKHKSGKQIKKSRSRIGERLHVLELFAGVYLFFCASYDLAFGRNHFYIYLYLQAAAFFVMGFGYIGTFVPTS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
2030	75		18		1.0
2032	20	80			1.0
2033	20			80	1.0
2034		80	20		1.0
2040		23		76	1.0
2041	23			76	1.0
2057		66		33	0.997452
2258		66		33	0.997452
2378	30			70	1.0
2788	27	72			1.0
2835	11		88		0.923564
2867	87		12		0.992554
2872	42		57		1.0
2877		14		85	0.993533
2910	85		14		0.993533
2949		33	66		1.0
3042		40	60		1.0
3043		40		60	1.0
3249		7		78	0.999974
3279	80		20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
225	237	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain