SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6567

Length: 1664 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6567 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F5O11.33 n=2 Tax=Arabidopsis RepID=Q9LDX3_ARATH	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Sma3	Adenosine 3'-phospho 5'-phosphosulfate transporter, putative	-	-	5.087e-09	-

Source	Gene names
Sma3	AT1G12600; AT4g23010; At1g12600; At4g23010; F7H19.200; GSVIVT00001087001; GSVIVT00026335001; LOC_Os03g02670; MtrDRAFT_AC155886g22v2; Os03g0118200; OsI_09974; OsJ_09186; PHYPADRAFT_128915; POPTRDRAFT_1067052; POPTRDRAFT_730998; POPTRDRAFT_830820; RCOM_1613

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UAA transporter	IPR013657	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G12600.1	UDP-N-acetylglucosamine (UAA) transporter family chr1:4286414-4288859 REVERSE LENGTH=349	73%
RefSeq	Arabidopsis thaliana	NP_172720.1	UDP-N-acetylglucosamine transporter-like protein [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002320097.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRK5

Fln msg: your sequence is longer than subject: 360 - 329

Fln protein: MGREGNLNDSNPSMSLLGITLTGKPKWLQLLICAAGFFFGYLVNGICEEYVYNRLQFSYGWYFTFIQGFVYLALIYLNGFRIRDIQNPWKIYVNLSAVLMGSQGLTKGSLMFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLEEYIAAMLLVVGLIIFTLADAQTSPNFSVWGVIMVCGALILDAFLGNLQEAIFTLNPSTTQMEMLFCSTAVGLPFLIPPMILTGELFKAWEACSQHLYVYLVLIFEATATFVGQLSVLCLIAIFGAATTAMVTTARKAVTLLLSYIIFTKPITEKHATGLLLIAMGIILKMLPNPMPNTARKQNNSEAFANQPSKMVASSKEDLEESRALKSDT*

Protein Length: 361

Fln nts: CAACCACACACCCTCATAAATTGTTTGCGAGATTTGTTTACTCGGGCGTTTTGTATGGCCATGATCGCTCATTTTGTTGGGTTTGGGTTTGCTAAGCTCCTAATTGGAAGGAGGCGGATGCGCTTCTGCACCATTGGTCTGTAATTACTCTCAGACC_-_ATGGGTCGTGAAGGGAATTTAAATGACAGCAATCCTTCTATGAGTCTGTTGGGTATTACCTTAACAGGTAAACCAAAATGGCTTCAGCTCCTCATCTGCGCTGCGGGATTCTTCTTTGGGTATTTGGTGAATGGAATTTGTGAGGAATACGTGTATAATAGATTACAATTCAGCTATGGATGGTATTTCACCTTTATACAAGGATTTGTGTATTTGGCGCTTATCTATCTCAATGGCTTCAGAATAAGGGATATACAAAATCCATGGAAAATATACGTAAACCTCTCTGCTGTACTCATGGGGTCCCAAGGATTAACCAAGGGATCTCTAATGTTTCTTAATTATCCGGCCCAAATCATGTTCAAGTCCACCAAGGTTTTGCCTGTTATGATTATGGGAGCCTTTATACCAGGCTTAAGGCGAAAGTATCCCTTGGAGGAATACATCGCGGCGATGTTGCTTGTCGTTGGTTTGATAATCTTCACACTGGCAGATGCCCAAACATCCCCAAATTTCAGTGTGTGGGGAGTTATTATGGTCTGTGGAGCTCTGATTTTGGATGCCTTTTTGGGTAACTTGCAAGAGGCCATATTTACTCTGAATCCTTCTACTACACAAATGGAAATGCTGTTCTGCTCTACTGCTGTGGGACTCCCCTTCTTGATTCCTCCAATGATTTTGACTGGAGAGCTCTTCAAAGCCTGGGAAGCCTGCTCACAACACTTGTATGTTTATCTCGTGCTGATATTCGAAGCAACAGCCACCTTCGTAGGCCAGCTGTCTGTTCTGTGTTTAATAGCAATCTTCGGAGCTGCCACAACTGCCATGGTGACAACGGCGAGAAAGGCGGTAACATTGCTTCTATCATATATCATATTCACAAAGCCTATCACGGAGAAGCACGCAACTGGATTGCTTCTGATAGCCATGGGAATTATATTGAAAATGCTTCCAAATCCCATGCCTAATACCGCGAGAAAACAAAACAACAGTGAAGCTTTTGCGAACCAGCCATCCAAAATGGTTGCTTCTTCCAAAGAAGATTTAGAAGAAAGCAGGGCACTTAAATCAGATACATAA___TCATGCTGTGATGTGCTGTATACTATATTAACAGATGAGCGGTCAAGGTTTTGAATAGTTAATTTTGGTACTTGACTTTAAATGTCCTTTGAGTTTGTTAAGGATGTTTTACTACCGTATACATAGCACAGGTGCTGACCTGGTCAAGTTCTGTTCTACCTTGTTATGTTCATACATTCTCAATTATATGAAGGATTTTTCAAACTTCAAAAGATGAAAATTGCCAGTATTCATGCAGAAAAAGAAATTACTGCAATTTTGACTTAAACAACTTCTACAGGAGCTATGTTACGGATATATTACCGCAATTTTGAGTTAAACAGCTTTTACAGGACTTATGTTACGGACATTTTCGTTACTTGTAGGTAAATGCTTATAGGTAAGAGTTAACAAAATCATTGTAACAAATAGACCTATACTGCTTAAA

Fln Alignment:

Contig6567___LTGKPKWLQLLICAAGFFFGYLVNGICEEYVY------NRLQFSYGWYFTFIQGFVYLALIYLN----GFRIRDIQNPWKIYVNLSAVLMGSQGLTKGSLMFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLEEYIAAMLLVVGLIIFTLADAQTS-------PNFSVWGVIMVCGALILDAFLGNLQEAIFTLNPSTTQMEMLFCSTAVGLPFLIPPMIL--TGELFKAWEACSQHLYVYLVLIFEATATFVGQLSVLCLIAIFGAATTAMVTTARKAVTLLLSYIIFTKPITEKHATGLLLIAMGI
A9NRK5______________ITQFQRLLRLLFCVGGIFGAYIYQGFLQETLSTKRFGPNGQRFQHLPFLNFAQNVVCLAWSYLMITLWSTKSSGAAPPWK-YWSPSITNTIGPALGLQALKYISYPAQVLVKSSKMIPVMLVGALFYGI--KYTVPEYICTFLVASGVSLFALSKSSSKTVSKLAHPN-APWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFFYMFLFPGGGGFEALQFCKQHPEAAWDILWFCVCGAIGQNFIFMTISLFGSLANTTITTVRKFFSILVSSLFSGNPLSDRQWISVFMVFGGL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1332	66		33		0.997452
1595	85			14	0.993533
1596	85		14		0.993533
1598	85		14		0.993533
1602		14	85		0.993533
1603	14	85			0.993533
1605	85	14			0.993533
1609	14			85	0.993533
1612		85		14	0.993533
1615		14		85	0.993533
1618	83		16		0.994512
1625	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain