SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6528

Length: 1837 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6528

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Geraniol 10-hydroxylase n=1 Tax=Swertia mussotii RepID=D1MI46_9GENT	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Cytochrome P450	-	-	1.615e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	6.041e-07	-

Source	Gene names
Sma3	At2g45560; At2g45570; At2g45580; At3g52970/F8J2_140; At3g61040; CYP76A8; CYP76B1; CYP76B7; CYP76B8; CYP76C1; CYP76C2; CYP76C3; CYP76F3; CYP76F4; CYP76G3; CYP76G4; CYP76G5; CYP76O2; CYP76T1; CYP76T2; CYP76T3; CYP76T5; F17K2.10; F17K2.11; F17K2.9; F3'H2; F3

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavonoid 3'-monooxygenase activity	GO:0016711	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3		GO:0050381	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Protein of unknown function DUF247, plant	IPR004158	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPD9

Fln msg: your sequence is longer than subject: 576 - 512

Fln protein: MGLSCTSFKEGCRSRTGQRRLLLQNPSQKLCGDHISHAEPPRSCREKGMCTCIFLCSALLGLVLLIPMDTVWLFWYSGVGITFFIVFFMLEECLKKRNSRLPPGPPGWPIVGNLLQLGHKPYQTLFHLANRYGPLMSITLGRKTIVIVSSPAVAKEIVKTHDHIFASRTVIEAAKSLSHHKFSIIWSEHGSHWRMLRRISTTELFSAKRMEALQYMRRDQVFRTIRQILQESVKGGSINIGETAVRSVINLLGNMVFGKDMFDPYSAAFQDFKDSIWKLFVTAGTPNLVDYFPCLQPLDPQGVLRKTRICMKKVYGIVDQFIEDRLATRGETMEGSRDGPKDLLDVLLDTRSDEFSVADIRAYLTDLFAAGTDTTAKIMEWTMAELVRNPEKMKETQNELDRMIGHNRMVAECDIDNLPYLRAVVKEAFRLHPPGPLLVPRRADSRCEIEGFLIPKHTTVLLNVWAMGRDPAIWKEASKFMPERFVNSAVDFRGQHLELMPFGAGRRMCVGLPLASRMIHLMLGSLLHSFDWAPPDGIHPELLDMNDKLGAGTLEKAVPLQAIATPRLPPHVYVC*

Protein Length: 577

Fln nts: C_-_ATGGGACTATCCTGCACGAGTTTCAAGGAGGGCTGCAGAAGTAGAACCGGCCAGAGACGCCTGCTGTTACAGAACCCTAGCCAGAAGCTATGTGGAGACCACATATCCCACGCCGAACCTCCACGCTCCTGTAGAGAGAAAGGCATGTGCACTTGTATATTTCTTTGCTCTGCTCTGCTCGGCCTGGTTCTATTAATCCCAATGGATACTGTATGGTTATTCTGGTACTCTGGTGTAGGGATCACCTTCTTCATTGTCTTCTTTATGTTGGAGGAGTGCCTGAAGAAGAGAAATTCCAGGCTTCCTCCGGGGCCTCCAGGATGGCCAATAGTGGGAAATCTGTTGCAGTTGGGTCACAAGCCCTACCAAACTCTGTTCCACCTTGCCAACAGATATGGGCCTCTCATGTCTATCACTCTCGGAAGAAAAACTATAGTGATAGTTTCATCTCCCGCTGTTGCAAAAGAAATTGTGAAAACCCATGATCATATTTTCGCAAGCAGGACTGTCATAGAAGCAGCAAAGTCTCTTTCCCACCACAAATTTTCAATAATTTGGAGTGAGCATGGATCTCACTGGCGTATGCTCAGGCGTATATCCACTACAGAGCTCTTCAGTGCCAAAAGAATGGAGGCTCTGCAATACATGAGAAGGGATCAGGTATTTCGAACGATCCGACAGATTCTGCAGGAGAGCGTGAAGGGAGGGAGCATAAATATTGGGGAAACTGCGGTCCGCTCCGTCATTAATCTGTTGGGAAACATGGTGTTTGGTAAAGATATGTTCGATCCCTATTCTGCAGCTTTCCAAGATTTCAAGGACAGCATTTGGAAACTGTTTGTGACCGCAGGAACTCCCAACTTGGTGGATTATTTCCCGTGCCTTCAGCCTCTGGATCCGCAGGGCGTGTTGCGTAAAACGAGGATCTGTATGAAAAAGGTGTATGGGATTGTTGATCAATTCATAGAGGACCGCCTGGCCACAAGAGGGGAAACCATGGAGGGAAGTCGTGATGGCCCCAAGGATCTTTTGGACGTTCTGCTCGACACAAGGAGCGATGAATTTAGTGTGGCCGACATCAGAGCATATTTAACTGACTTATTTGCAGCAGGGACTGACACCACCGCAAAAATAATGGAGTGGACAATGGCAGAACTGGTACGCAACCCAGAGAAAATGAAAGAAACTCAGAACGAGTTGGACAGGATGATTGGCCACAACCGAATGGTAGCTGAATGTGACATTGACAACCTCCCTTATCTCCGCGCAGTGGTGAAAGAAGCATTCCGATTGCACCCCCCTGGTCCTCTGCTCGTTCCACGCAGAGCAGATAGCCGTTGTGAGATTGAGGGTTTCCTGATACCCAAACACACAACAGTGCTGCTGAACGTGTGGGCGATGGGAAGGGACCCTGCAATCTGGAAGGAGGCGTCGAAATTTATGCCAGAGAGATTTGTTAACAGTGCCGTGGACTTCAGGGGACAACACTTGGAGCTGATGCCGTTCGGAGCAGGAAGGAGAATGTGCGTGGGGCTTCCGTTGGCGAGTCGGATGATTCATCTGATGTTGGGGTCGCTGCTTCATTCATTCGATTGGGCGCCTCCCGATGGCATCCATCCCGAGCTGCTCGACATGAACGACAAGTTGGGAGCTGGAACCCTAGAAAAGGCGGTGCCATTACAGGCAATTGCCACGCCTCGCCTGCCGCCTCACGTCTACGTCTGTTAG___ACTGGCTTTCTTTATTTGTCAAACAATGTATTAACTAACTAGCAATGGTTGCAAGAAAAGAAAAGCTTCCAGGATGGTTGAATTGGAAAGGAAAAATTGTATTTTGGT

Fln Alignment:

Contig6528___MDTVWLFWYSGVGITFFIVFFMLEECLKKRNS--RLPPGPPGWPIVGNLLQLGHKPYQTLFHLANRYGPLMSITLGRKTIVIVSSPAVAKEIVKTHDHIFASRTVIEAAKSLSHHKFSIIWSEHGSHWRMLRRISTTELFSAKRMEALQYMRRDQVFRTIRQILQESVKG-GSINIGETAVRSVINLLGNMVFGKDMFDPYSAAFQDFKDSIWKLFVTAGTPNLVDYFPCLQPLDPQGVLRKTRICMKKVYGIVDQFIEDRLATRGETMEGSRDGPKDLLDVLLDTRSDEFSVADIRAYLTDLFAAGTDTTAKIMEWTMAELVRNPEKMKETQNELDRMIGHNRMVAECDIDNLPYLRAVVKEAFRLHPPGPLLVPRRADSRCEIEGFLIPKHTTVLLNVWAMGRDPAIWKEASKFMPERFVN----SAVDFRGQHLELMPFGAGRRMCVGLPLASRMIHLMLGSLLHSFDWAPPDGIHPELLDMNDKLGAGTLEKAVPLQAIATPRLPPHVY
B8LPD9______________MDIGRFVFYSLLGITSAIVYFVLDVWKKKKKTYCRLPPGPQGWPIVGNLFQLGKKPHESLFRLATKYGPLMSLSLGMKTTVVVSSPSMAKEVLKTHGHVFAGRIVTQAARSLSHDKSSFLLCQYGSRWRTLRRISNTELFSVKRLDALQDLRRVQVRGMIHQIFENSVKGSGCVNIGHIAFHSAFNLIGNMAFGKDMFDPHFRASEDLKDAISKLMVLHTAPNLADYFPCLQFLDLQGVYRNTGIYRKKAYDVMDKFIEDRLAKRGKNSDRTDDGKKDLLDVLLDMRSDEFTLTDIRGYLNDMFVAGSDTTAVTIEWAIAELVRNPEKLKRAQAELEEVIGLNRRLEESDTERLPYLRAVVKEVFRLHPAGPLLVPHRADGRFEIAGFVIPKHSRVLVNVWGMGRDPQIWNEPLKFVPERFIDDEMCGQMDYKGKDFELIPFGAGTRMCVGLPLASRMVHLVLGSLIHSFEWAPPKGMSAEQMDMTEKFGL-ALQKAVPLEAIATPRLLSHVY

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
925	85			14	0.993533
927	85	14			0.993533
929		85		14	0.993533
1073	20			80	0.995493
1075	80		20		0.995493
1077			20	80	0.995493
1117			87	12	0.992554
1345	14	85			0.993533
1346		14	85		0.993533
1347	14			85	0.993533
1352	85		14		0.993533
1358	83		16		0.994512
1402		14		85	0.993533
1403		16	83		0.994512
1414	87			12	0.992554
1510		88	11		0.923564
1511		88	11		0.923564
1668	33	66			1.0
1678	15		84		1.0
1823		14	85		0.993533
1827	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
167	181	TGCTC TGCTC TGCTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain