SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6520

Length: 852 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6520

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	anaphase promoting complex/cyclosome subunit [Arabidopsis thaliana]	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	Gene names
Sma3	APC6; At1g78770/F9K20_19; CDC16; F9K20.19; GSVIVT00027833001; LOC_Os03g13370; MICPUCDRAFT_55310; MICPUN_51833; OJ1081D05.3; OSTLU_39911; Os03g0236900; OsI_10676; OsJ_10068; Ot01g01010; PHATRDRAFT_1550; PHYPADRAFT_153829; POPTRDRAFT_585761; POPTRDRAFT_5857

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-
Sma3	cell division	GO:0051301	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G78770.1	APC6 anaphase promoting complex 6 chr1:29617421-29621273 FORWARD LENGTH=543	72%
RefSeq	Arabidopsis thaliana	NP_565188.1	anaphase-promoting complex subunit 6 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002331799.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADE4

Fln msg: your sequence is shorter than subject: 268 - 533

Fln protein: CFHLKCTLVHIATAMELGHKNELYLMACNLVKDYPQKAISWFAVGCYYYCIRQFDQSRRYFSKATSLDGTFAPAWIGFGNAFAAKDESDQAMAAFRTCARLFPGCHLPTLYIGLEYMRTHSYKIAEQFFMQAKRICPTDPLVYHELGVVSYKTQEYEKAVRWFEKTLSLVPLPLTETWEPTLVNMAHALRKLRRYIHAIKSYEKALDLSSRNVSTYAGLGYTYHLQNKFDDAIHLYHKALALKPDHQFCGEMLNIALDDAINFKMSY*

Protein Length: 269

Fln nts: AATGTTTTCATTTGAAATGCACACTAGTACATATTGCAACAGCAATGGAACTTGGCCACAAGAATGAGCTTTATCTTATGGCATGTAATCTAGTGAAGGACTATCCACAGAAAGCCATATCATGGTTTGCAGTTGGTTGCTACTACTACTGTATCCGACAATTTGACCAGTCACGCCGATACTTCAGCAAAGCTACTTCTCTAGATGGCACATTTGCTCCTGCATGGATAGGTTTTGGAAATGCATTTGCTGCTAAGGATGAAAGTGATCAAGCAATGGCTGCTTTTCGAACATGTGCTCGGTTATTTCCAGGGTGCCATTTACCTACATTATATATTGGGTTGGAGTACATGCGGACACACAGCTATAAAATCGCCGAACAGTTTTTCATGCAGGCGAAAAGGATTTGCCCTACAGATCCTCTTGTGTATCATGAACTGGGAGTTGTGTCTTATAAAACCCAAGAGTATGAGAAAGCTGTACGGTGGTTTGAAAAGACTCTAAGTCTCGTTCCATTACCATTGACTGAAACTTGGGAACCTACATTAGTAAACATGGCACATGCATTACGAAAACTCAGACGTTACATTCATGCAATCAAATCATATGAGAAAGCATTGGACCTTTCTTCGAGGAATGTAAGCACATATGCAGGCCTTGGATACACTTACCATTTGCAGAACAAGTTTGATGATGCAATTCATCTTTACCACAAGGCATTGGCACTGAAACCGGATCATCAATTTTGCGGGGAGATGTTAAACATTGCCCTTGATGATGCAATTAATTTTAAAATGAGCTATTAA___AAATTGTGGCCTCTTGTAATTCTATGCGTTGCAACACTATCTAGAT

Fln Alignment:

Contig6520___FHLKCTLVHIATAMELGHKNELYLMACNLVKDYPQKAISWFAVGCYYYCIRQFDQSRRYFSKATSLDGTFAPAWIGFGNAFAAKDESDQAMAAFRTCARLFPGCHLPTLYIGLEYMRTHSYKIAEQFFMQAKRICPTDPLVYHELGVVSYKTQEYEKAVRWFEKTLSLVPLPLTETWEPTLVNMAHALRKLRRYIHAIKSYEKALDLSSRNVSTYAGLGYTYHLQNKFDDAIHLYHKALALKPDHQFCGEMLNIALDDAINFK
D5ADE4______________FHLKCTLVHIATAMELGHKNELYLMACNLVKDYPQKAISWFAVGCYYYCIRQFDQSRRYFSKATSLDGTFAPAWIGFGNAFAAKDESDQAMAAFRTCARLFPGCHLPTLYIGLEYMRTHSYKIAEQFFMQAQRICPTDPLVYHELGVVSYKTQEYDKAVRWFEKTLSLVPLPLTETWEPTLVNMAHALRKLRRYPQAIKSYEKALDLSSRNVSTYAGLGYTYHLQNKFDEAIHLYHKALALKPDHQFCGEMLNIALDDAINFK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
483		66		33	0.997452
532			33	66	1.0
578	85			14	0.993533
579	85		14		0.993533
580	85		14		0.993533
581		85	14		0.993533
582			14	85	0.993533
601	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain