SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6503

Length: 1777 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6503

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SNS7_PHYPA	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	-	-	2.375e-21	-

Source	Gene names
Sma3	At1g08560; At1g11250; At1g61290; At3g03800; At3g11820; At3g52400; At4g03330; At5g08080; CHLREDRAFT_195969; F20H23.28; F22O13.4; F22O6_220; F26K24.11; GSVIVT00003524001; GSVIVT00009730001; GSVIVT00024908001; GSVIVT00026017001; GSVIVT00026042001; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein anchor	GO:0043495	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	-
Sma3	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	protein targeting to membrane	GO:0006612	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	regulation of plant-type hypersensitive response	GO:0010363	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-
Sma3	negative regulation of programmed cell death	GO:0043069	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	negative regulation of cellular defense response	GO:0051245	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tyrosinase	IPR002227	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Uncharacterised domain, di-copper centre	IPR008922	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11820.1	SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, PEN1 syntaxin of plants 121 chr3:3729540-3730868 REVERSE LENGTH=346	56%
RefSeq	Arabidopsis thaliana	NP_187788.1	syntaxin-121 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002319678.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P217

Fln msg:

Fln protein: MNDLLNKSFSNYGAFKQGPMRDLEAGPEVEMANNGNDKNLGQFFEQVGSIKRDMEAMQELFGNLQRANEESKTVHKAQAMKGLRDRMDKDVVEVLKKAKLVKGKLEALDRANVASRRLLGCEEGTPTDRTRTSITNSLRKKLKDSMGEFQILRQKIMGEYRDTVQRRLYNITGEYADEDTLEKIVSTGESENILQKAIQEQGRGRILETIHEIQERHDAVKEIERSLLELHQVFLDMAVLVEAQGEQLNNIEYNVANASNYVEHGTKQLFTAKKHQKRSRKWMCIGIILLLILILIIVVPIATSIKKS*

Protein Length: 310

Fln nts: ATGGGGGAGGATGATCTCTCACGCAGTGGCTCGAAAATGGCGTAATTACGGAGCTGTTTGCTAGCTGTCTTTTTCATGTCACGCCTGAAGTGTGGAAGCAAGAGGCGTGGTTGAAATTATTCATTCAATTCTCCATCCATCAAAATCCATTTCACTTCACCGTCTTCAAGGCGCAAAATCCGGTGAAGAAATCGTTACCTTTGGTGCTACGGAAGCCAATACCATGTCTTTAAAGCAATTGAAACAGTTGCTTTGATGCCGTACTTTGTATACGCTTTTTTCAGAGGGAGAAACTGTTCACAAGAGGCTCTGTTCTGCGCTTTGGTGAATTGAACCCCTGAAGGTTAGAGTTTCTTTCCGGCATTTCGTTCTCGGGAGAGCTTTTGGCTCCAGCCGTTCTGAGATTTCTTGAATCTTCTTCAATAGTTTAGTCGAGCGTTCCTCAAGGGTGAACTAAATTCAACAGAAAACGGGCAAACAATCAGGAAAC_-_ATGAACGATCTCCTGAACAAATCCTTTTCCAACTACGGGGCTTTCAAACAGGGGCCAATGAGGGACTTGGAAGCTGGTCCCGAGGTGGAAATGGCAAACAACGGTAATGATAAGAACCTAGGTCAATTCTTTGAACAAGTTGGGAGCATCAAACGGGATATGGAAGCAATGCAAGAGCTGTTTGGAAACCTGCAGAGGGCAAACGAAGAGAGTAAAACGGTTCATAAAGCACAGGCTATGAAAGGATTGAGGGATCGCATGGATAAGGACGTGGTAGAAGTCCTCAAGAAGGCTAAACTGGTCAAAGGCAAGCTTGAAGCCCTGGACAGAGCCAATGTAGCAAGCCGTAGATTGCTTGGATGCGAGGAAGGAACACCCACAGATAGAACCAGGACCTCCATTACAAACAGTCTGCGAAAAAAGCTTAAGGATTCGATGGGGGAATTTCAGATTTTGAGGCAAAAGATAATGGGTGAGTATAGAGATACCGTTCAACGAAGACTCTATAATATAACAGGGGAGTATGCAGATGAAGACACACTTGAAAAAATCGTTTCAACGGGAGAGAGTGAAAACATTCTCCAGAAAGCCATCCAAGAGCAGGGTCGAGGTCGTATTCTTGAAACCATCCATGAAATACAGGAGCGACATGATGCTGTCAAGGAGATCGAGCGGAGTTTACTCGAGCTGCATCAAGTTTTCCTTGATATGGCCGTGCTTGTTGAGGCACAGGGTGAGCAGCTCAATAATATTGAATACAATGTTGCCAATGCTTCAAACTATGTTGAACATGGAACCAAACAACTTTTTACTGCAAAAAAGCATCAGAAAAGAAGCCGAAAATGGATGTGCATTGGCATCATTCTGTTGCTGATACTCATCCTCATTATTGTTGTTCCTATAGCAACAAGCATCAAGAAATCATAA___AGAGGAGAACCGTTGCAGAGTCAGAATGCAGCATTGTGTTGCCATTGGGAATGAGTTATGCAAGGGACGAGAACAGGCCAGGCAACTGCTGTAGAGCCATTGTTACATCAAATGAATTTATTCAAGGCTTCGCAGGCACGCCTCGCATTACAACAAGCTTCATTGTAATTCCTGTTCTAAGACACCTATTTTGATGTTGGAATAAATAATGCTCGATTAATTAATTGAATTTAGTTATAAAGACTCCGTGCTGCTCATTACTCCCCTGATATAATTCCCATTTATTCAGAAGCCAAAATCTTCCCTCTTCTTTTAGAAATAAAATCATTAAAAATAAAATGATTAATTCTACTCCAACAC

Fln Alignment:

Contig6503___MNDLLNKSFSNY-GAFKQGPMRDLEAGPEVEMANNGNDKNLGQFFEQVGSIKRDMEAMQELFGNLQRANEESKTVHKAQAMKGLRDRMXXXXXXXXXXXXXXXXXXXXXDRANVASRRLLGCEEGTPTDRTRTSITNSLRKKLKDSMGEFQILRQKIMGEYRDTVQRRLYNITGEYADEDTLEKIVSTGESENILQKAIQEQGRGRILETIHEIQERHDAVKEIERSLLELHQVFLDMAVLVEAQGEQLNNIEYNVANASNYVEHGTKQLFTAKKHQKRSRKWMCIGXXXXXXXXXXXVVPI
A9P217______________MNDLLSRSFSREKGSF------DIESGGDMEMAAMDAEKNLTPFFSEVSLMKTEMEQIRQLLLKLKEAHEESKTIHKAQAMKSLRERMDRDVLQILKKAKFIKGKLEELDKANLSSRKIPGCGQGSSTDRTRTATTNGLRNSLKKLMGEFQSLRQIIMAEYKETIERRYYTVTGEKADEETIDHIIETGESENMLQRAIQEQGKGQIIEVIREIQERHDTVKEIEKNLLELQQVFLDMAVLVQTQGQELDSIEANVERASSFVDGGTRKLRKARKLQKNTRKWTCIGILILLIIILIIVLPL

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
435	28		71		1.0
520		83		16	0.994512
591	90		10		0.90298
614		18		81	0.999994
674		22		77	0.999999
733	88	11			0.923564
748	11		88		0.923564
781	75		12	12	0.975346
803			90	10	0.90298
828	11		88		0.923564
830	77		22		0.999999
993	50	50			1.0
995		66	33		0.997452
996	33			66	0.997452
1254	28		71		1.0
1475			18	81	0.999994
1496		50	50		1.0
1589		85		14	0.993533
1611	16		83		0.994512
1621		16		83	0.994512
1640	16			83	0.994512
1641	83	16			0.994512
1643	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain