SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6498

Length: 2727 nt

UniGene Fasta

>sp_v3.0_unigene6498
ATGGGGATTCAATTCTTCTGCCTTGGAATACAGAATGTTCCCATGCAGGATACCATTCATTAATGTGTTCAGAGGGCTTATCGTTGTTGTGGATCACTAGTCTTGGAATTCTCATAATCTGCATATGGGTAGTTGTGGTTCAGTCTTAGAGGTCATGAATGAAGTGCCCACCTGGTTAGTTTTATTTAGTTTTGCTTGCTCGTAAGTTATAGGTGTCGTGTGAAATTGGTTTTTTATGGTGATCTTGACTGAGGAATTGTGCTTTGTAGCAGCAAGCAATCAGTCGAAGCCCATTGGCAGTTGCTATAGCGCATTGCTTCTGGCGTTCAAGATATTTGTTTTTTTAATGGAAGTACTCTGATACAGGTATGGGGGGTCATTTGGTATCAGTATTTATGTGGGGATATTTCTTGAGTTCGTCACGTCAGTCAACCTTTTTCCATTCTATATCTCATACACTGTTTGGCGGTGTTTTGCATCTACACTTTAGTTGGTTGGTCAGCGTTTTACTGTTTCAATAAAGTTTTGCATTATTCGATATATAATAATCTCGTCCTCTTAATCCACAATCCCATTATTTCCCTTTCTAGTGTGAATTACCCCATTGGCAACTCTTCAGATCCACTGGTTTTGCATTCAAAACTCCATTTTGATATACTTCTCTGCTTTTTAAACAAAACCAGAATTTCCCTTGTATTGGCCTTGTTTTGCATTCAGTAGCCTATCTAATTCCTGTTTGGAGCCATGAGGGAAATATGGACATCTTTGGCTTCTCTGATGGGTGTTCTAGCCTTCAGTCAGACACTTTTACATGCACTGCTTCCCCCAGAGCTGCGCTACGTTCTGAGCAGATTCATCAATCATATGCTCAATTGGTTTTCAGCCTACACTTACTTCGATATCATGGAAGTGGAAGGTGTGAATACGAACGATCTTTACAGTGCTGTGCAACTTCATCTGAGCAACTCTCCATCCATTTCGGCACGAAGAGTTAATCTCAGCAGAGCTAAAAACTCGAGCTCTTTCACATTCAGCCTTGCCAACAATGATAAGATTGTTGACAAATATAAAGGAGTGAGCATATGGTGGGAGCATCATGTAACCCAGAGGCAGAATCAGTCATTTTCATGGAGGCCTCTCCCAGAAGAGAAGAGAGGATTCGTTCTGTGTATACACAAGAACGACAAGGAGCGGATCCTGAATTCATATCTGGAGCATATAATGGAGCATGCCTTGGAGATCAGAAGAAAGAATCAAGAGCGCTTGCTGTACACAAATTCTAAAGGAGGAGGTATGGATTCAAGGACTCAGCCATGGGAATCAGTGCCCTTCAAACATCCGAGCACATTCGATACTTTGGCTCTAGATCCTGCTAGGAAAGCAGAAATCATAGAAGATCTTGAGGCCTTTGCCAAAGGCAAAGAGTTCTATCAGAATACAGGAAGAGCCTGGAAGAGAGGCTATTTGCTTTATGGGCCTCCAGGAACAGGCAAATCTAGCATGATTGCAGCTATGGCCAATCATTTGGGCTATGATGTCTATGATCTGGAGCTCACTGATGTCCATACAAATGGAGAGCTGAGGAAACTACTGATAAAGACCACCAACAAGTCTATTATTGTTATTGAGGATATTGATTGCTCATTGAATCTCTCAAGCCGTGCAAAAAAACCAGCCGCCAGAGTGGACTCTGTTATGGCAGGATCTCCAATGCAGCGGCCTGATGAGAACAACAATTCAGTTACCCTATCTGGCTTGCTTAATTTCACAGATGGGCTTTGGTCATGCTGTGGTAGTGAGAGAATCTTTGTTTTCACTACCAATCATGTAGAGAAACTTGATCCTGCACTGTTGAGATCAGGAAGGATGGACCTGCACATTTTCATGTCATTCTGCACATTCCCTGCCTTGAAAATTTTGGTGAAAAACTATCTGGGGATCGAGAAACACCAACTGTTTCCAGAACTGGAGCAGGTTACTGAAGATGCCCGGATGACGCCTGCAGATGTTAGCGAAATCCTCGTGAAATACCGTTTGAATGCCACCCAAGCATTGGAAGAGTTGCTTGAAACATTCAAGGCTGCAAAGGACAAGCCTCATGCATCTTGGGCAAGGGAAGAAAACCCAAACCCAAACCCAGTTGAGGATGAGGAGCAAGAAAAGAGAGCTCTGGAGACTCCTAAGAAGACTCAACTCCATGAGGATTATTTGACGTCTGTTGACAGATGCCAATGTCAAAGGAATCAACAGAAAGAGAATGCAATTGGGAAGGATAAAGATGCAGAAAATCAAGGAAAGAAAAATGATCAATCTGGAGAACAAGAGGGGACTGATGACTCAAAGATGCAGAAAGCTGAGTGAATGCCTTCAAATCTCACTGGATTTTTACATGGCAGCCAACTTTAGAAGGGCTCTATAGCCTTGCTGTAATCACAATTTTGTAGTCCAGACTCCAGAATGCTATTTGCTGTGGCCACTTATATACAGGTCCTTCGTTTCATGCAATGAAATTTAATGTTTTATATTTCAAAATCTTTGGCTCAAGGTCATGATTTTGGAAGTGTTTTGTTTATTATTTATCAATCAAACAGTCAGGTACTCCTAAATCTTACATATGTATCCGAGATCTCTGAGTATTTCTGCTTATTTTGTTTATTACAGATTCATTGCTTCAAGAGTTTGCATATTTCTCAGTGCTTTTGTAGGATTCTTTGGATCGTGTACATT

Ace file of the UniGene sp_v3.0_unigene6498

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T8B4_RICCO	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Similarity to AAA-type ATPase	-	-	7.833e-20	-

Source	Gene names
Sma3	ACRE102; AT4g30250; At3g28510; At3g28540; At3g28580; At3g28600; At3g50930; At3g50940/F18B3_220; At4g05380; At4g25835; At4g30250; At5g40010; At5g57480; F18B3.210; F18B3.220; F9N11.100; GSVIVT00000059001; GSVIVT00003720001; GSVIVT00020821001; GSVIVT00020823

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:23279406-23280968 REVERSE LENGTH=520	64%
RefSeq	Arabidopsis thaliana	NP_200556.1	AAA-type ATPase family protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002325059.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D7

Fln msg: your sequence is longer than subject: 539 - 478

Fln protein: MREIWTSLASLMGVLAFSQTLLHALLPPELRYVLSRFINHMLNWFSAYTYFDIMEVEGVNTNDLYSAVQLHLSNSPSISARRVNLSRAKNSSSFTFSLANNDKIVDKYKGVSIWWEHHVTQRQNQSFSWRPLPEEKRGFVLCIHKNDKERILNSYLEHIMEHALEIRRKNQERLLYTNSKGGGMDSRTQPWESVPFKHPSTFDTLALDPARKAEIIEDLEAFAKGKEFYQNTGRAWKRGYLLYGPPGTGKSSMIAAMANHLGYDVYDLELTDVHTNGELRKLLIKTTNKSIIVIEDIDCSLNLSSRAKKPAARVDSVMAGSPMQRPDENNNSVTLSGLLNFTDGLWSCCGSERIFVFTTNHVEKLDPALLRSGRMDLHIFMSFCTFPALKILVKNYLGIEKHQLFPELEQVTEDARMTPADVSEILVKYRLNATQALEELLETFKAAKDKPHASWAREENPNPNPVEDEEQEKRALETPKKTQLHEDYLTSVDRCQCQRNQQKENAIGKDKDAENQGKKNDQSGEQEGTDDSKMQKAE*

Protein Length: 540

Fln nts: ATGGGGATTCAATTCTTCTGCCTTGGAATACAGAATGTTCCCATGCAGGATACCATTCATTAATGTGTTCAGAGGGCTTATCGTTGTTGTGGATCACTAGTCTTGGAATTCTCATAATCTGCATATGGGTAGTTGTGGTTCAGTCTTAGAGGTCATGAATGAAGTGCCCACCTGGTTAGTTTTATTTAGTTTTGCTTGCTCGTAAGTTATAGGTGTCGTGTGAAATTGGTTTTTTATGGTGATCTTGACTGAGGAATTGTGCTTTGTAGCAGCAAGCAATCAGTCGAAGCCCATTGGCAGTTGCTATAGCGCATTGCTTCTGGCGTTCAAGATATTTGTTTTTTTAATGGAAGTACTCTGATACAGGTATGGGGGGTCATTTGGTATCAGTATTTATGTGGGGATATTTCTTGAGTTCGTCACGTCAGTCAACCTTTTTCCATTCTATATCTCATACACTGTTTGGCGGTGTTTTGCATCTACACTTTAGTTGGTTGGTCAGCGTTTTACTGTTTCAATAAAGTTTTGCATTATTCGATATATAATAATCTCGTCCTCTTAATCCACAATCCCATTATTTCCCTTTCTAGTGTGAATTACCCCATTGGCAACTCTTCAGATCCACTGGTTTTGCATTCAAAACTCCATTTTGATATACTTCTCTGCTTTTTAAACAAAACCAGAATTTCCCTTGTATTGGCCTTGTTTTGCATTCAGTAGCCTATCTAATTCCTGTTTGGAGCC_-_ATGAGGGAAATATGGACATCTTTGGCTTCTCTGATGGGTGTTCTAGCCTTCAGTCAGACACTTTTACATGCACTGCTTCCCCCAGAGCTGCGCTACGTTCTGAGCAGATTCATCAATCATATGCTCAATTGGTTTTCAGCCTACACTTACTTCGATATCATGGAAGTGGAAGGTGTGAATACGAACGATCTTTACAGTGCTGTGCAACTTCATCTGAGCAACTCTCCATCCATTTCGGCACGAAGAGTTAATCTCAGCAGAGCTAAAAACTCGAGCTCTTTCACATTCAGCCTTGCCAACAATGATAAGATTGTTGACAAATATAAAGGAGTGAGCATATGGTGGGAGCATCATGTAACCCAGAGGCAGAATCAGTCATTTTCATGGAGGCCTCTCCCAGAAGAGAAGAGAGGATTCGTTCTGTGTATACACAAGAACGACAAGGAGCGGATCCTGAATTCATATCTGGAGCATATAATGGAGCATGCCTTGGAGATCAGAAGAAAGAATCAAGAGCGCTTGCTGTACACAAATTCTAAAGGAGGAGGTATGGATTCAAGGACTCAGCCATGGGAATCAGTGCCCTTCAAACATCCGAGCACATTCGATACTTTGGCTCTAGATCCTGCTAGGAAAGCAGAAATCATAGAAGATCTTGAGGCCTTTGCCAAAGGCAAAGAGTTCTATCAGAATACAGGAAGAGCCTGGAAGAGAGGCTATTTGCTTTATGGGCCTCCAGGAACAGGCAAATCTAGCATGATTGCAGCTATGGCCAATCATTTGGGCTATGATGTCTATGATCTGGAGCTCACTGATGTCCATACAAATGGAGAGCTGAGGAAACTACTGATAAAGACCACCAACAAGTCTATTATTGTTATTGAGGATATTGATTGCTCATTGAATCTCTCAAGCCGTGCAAAAAAACCAGCCGCCAGAGTGGACTCTGTTATGGCAGGATCTCCAATGCAGCGGCCTGATGAGAACAACAATTCAGTTACCCTATCTGGCTTGCTTAATTTCACAGATGGGCTTTGGTCATGCTGTGGTAGTGAGAGAATCTTTGTTTTCACTACCAATCATGTAGAGAAACTTGATCCTGCACTGTTGAGATCAGGAAGGATGGACCTGCACATTTTCATGTCATTCTGCACATTCCCTGCCTTGAAAATTTTGGTGAAAAACTATCTGGGGATCGAGAAACACCAACTGTTTCCAGAACTGGAGCAGGTTACTGAAGATGCCCGGATGACGCCTGCAGATGTTAGCGAAATCCTCGTGAAATACCGTTTGAATGCCACCCAAGCATTGGAAGAGTTGCTTGAAACATTCAAGGCTGCAAAGGACAAGCCTCATGCATCTTGGGCAAGGGAAGAAAACCCAAACCCAAACCCAGTTGAGGATGAGGAGCAAGAAAAGAGAGCTCTGGAGACTCCTAAGAAGACTCAACTCCATGAGGATTATTTGACGTCTGTTGACAGATGCCAATGTCAAAGGAATCAACAGAAAGAGAATGCAATTGGGAAGGATAAAGATGCAGAAAATCAAGGAAAGAAAAATGATCAATCTGGAGAACAAGAGGGGACTGATGACTCAAAGATGCAGAAAGCTGAGTGA___ATGCCTTCAAATCTCACTGGATTTTTACATGGCAGCCAACTTTAGAAGGGCTCTATAGCCTTGCTGTAATCACAATTTTGTAGTCCAGACTCCAGAATGCTATTTGCTGTGGCCACTTATATACAGGTCCTTCGTTTCATGCAATGAAATTTAATGTTTTATATTTCAAAATCTTTGGCTCAAGGTCATGATTTTGGAAGTGTTTTGTTTATTATTTATCAATCAAACAGTCAGGTACTCCTAAATCTTACATATGTATCCGAGATCTCTGAGTATTTCTGCTTATTTTGTTTATTACAGATTCATTGCTTCAAGAGTTTGCATATTTCTCAGTGCTTTTGTAGGATTCTTTGGATCGTGTACATT

Fln Alignment:

Contig6498___EIWTSLASLMGVLAFSQTLLHALLPPELRYVLSRFINHMLNWFSAYTYFDIMEVEGVNTNDLYSAVQLHLSNSPSISARRVNLSRAKNSSSFTFSLANNDKIVDKYKGVSIWWEHHVTQRQNQ-SFSWRPLPEEKRGFVLCIHKNDKERILNSYLEHIMEHALEIRRKNQERLLYTN-SKGGGMDSRTQPWESVPFKHPSTFDTLALDPARKAEIIEDLEAFAKGKEFYQNTGRAWKRGYLLYGPPGTGKSSMIAAMANHLGYDVYDLELTDVHTNGELRKLLIKTTNKSIIVIEDIDCSLNLSSRAKKPAARVDS------VMAGSPMQRPDENNNSVTLSGLLNFTDGLWSCCGSERIFVFTTNHVEKLDPALLRSGRMDLHIFMSFCTFPALKILVKNYLGIEKHQLFPELEQVTEDARMTPADVSEILVKYRLNATQALEELLETFKAAKDK
D5A9D7______________EVWSNLGSIMAAVIFIRTMAKEYLPPEFYGFLSKSLRSLIGIVSSHISVVIEENDGMKVSEVYEAVQTYLSVRSCSAAKRLKLKKPQHNKEFTFSMARNEQIAEEYEGIKVWWVFHSSERKQQIMFSWNSTSEEKRYYKLTFHKKHKHIIFDQYLPHVMAEAKTLEIRSRYRKIYTNQSNSRDYEYRNRVWTPVVFDHPATFGTLALEPELKQDIMEDLQRFLRGEKYYRQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLFTTTNKSIIVIEDIDCSLDLSDRKKKKKPQKDGEEDEKPSKPGKPDERESNEDSKVTLSGVLNFTDGLWSCCGSERLFVFTTNHVDRLDPALLRSGRMDKHILLTFCTFGAFKILARNYLSIEDHELFPDIGDLTEAAQMTPADVTEHLMKMADHPSRALENLIQALREAKER

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
807	33	66			0.997452
810	66			33	0.997452
924			80	20	0.995493
952	20	80			0.995493
955			20	80	0.995493
1565	16			83	0.994512
1566		16	83		0.994512
1612		80		20	0.995493
1613		80		20	0.995493
1731		33		66	0.997452
1779	66		33		0.997452
1816			25	50	0.995533
1817			25	75	0.996473
1818			25	75	0.996473
2084			25	75	0.996473
2085		75	25		0.996473
2101	75		25		0.996473
2165	85		14		0.993533
2278	90		10		0.90298
2313	14			85	0.993533
2431	10			90	0.90298
2462	11	88			0.923564
2465			88	11	0.923564
2471		12		87	0.992554
2476	12		87		0.992554
2478	12			87	0.992554
2479			87	12	0.992554
2536		25		75	0.996473
2632	14		85		0.993533
2640		14		85	0.993533
2642	85		14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
2121	2139	AAACCC AAACCC AAACCC A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain