SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6495

Length: 1431 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6495 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAK50098.1\|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gb\|AAF35413.1\| unknown protein [Arabidopsis thaliana] dbj\|BAB02376.1\| WD-40 repeat protein-like [Arabidopsis thaliana] gb\|A	-	-	4.0e-21	29%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	33%

Source	Gene names
Sma3	At2g37670; OSJNBa0014E22.36-1; Os02g0638900; OsJ_07666; P0010C01.12-1; POPTRDRAFT_1113907; POPTRDRAFT_801931; RCOM_1247050; VITISV_034983;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6H267

Fln msg: Distance to subject end: 574 aas, your sequence is shorter than subject: 365 - 880

Fln protein: MSSCSDEEDQFFESLDRIASTSGSDTEEDGDYLNAVNKCQKSNTVRNGCTLPVAAAASLASKYEVWKGEPGSVRERRQRLLRELGLSDDRELQREPPANFRRQEISEIQPDTQCSTSGSHTFAKQRGFHGDANLRTKQGPPVDMFRSISCDELSRRKPVESAWSIARSRSDGANPAEVWRKEGAKPPLGGGVRASAIVALETAAKDLLQSGNSKHLKDEMDLGHGKYNHLSSGGDQVSNLGSRVDRNDESNSDSVQVFFRSSDLGLGDLTVQLSREAEQARRDGIGDISHTDSSRGSFCKIKNLDNGKEFVVNEVGEDGMWNKLRDVETGRQLTMEEFERAVGHSPIVQELMTETGKCGTSRGER

Protein Length: 366

Fln nts: GGAGAATCGATCGTCATCGTCCCCAGGGTTTGAAGAGGAGGAGGCGGAGGAGGAGGAGGGGGGTTTTGAAGACGAAACGTGATTTGGATCTCCGGATCTTTTCGTGTTCTGCTGGAGAATCGATCGTTCGACGTCTGAGATTGGGTTCGCTTGGATTCGACTGTGAATTTCTGGGACTCGGTTGCTGACGAATACCATTTAGAGACAGCCCTGGGTTCTGAATTGAAGTGTAAGTAGGGTTTAGATTTTTGATGTAAATGTTGATTTGTTATTGAAACTGCCATGTGATCGAACCCACGCCGCTTCCGAGCTGGCATTCCAGGCGATGCCTGCACA_-_ATGAGCAGCTGTAGCGATGAGGAGGATCAATTCTTTGAGTCACTGGATCGAATCGCCTCCACTTCTGGATCAGATACCGAAGAAGACGGCGATTATTTGAACGCTGTAAATAAATGTCAGAAATCGAACACCGTTCGAAATGGCTGCACTCTACCCGTGGCAGCAGCAGCATCGTTGGCATCAAAATACGAAGTATGGAAGGGCGAGCCCGGTTCTGTTCGGGAACGCCGCCAGCGGCTTCTCCGAGAGCTGGGATTAAGCGACGATAGGGAGCTCCAGCGAGAACCCCCTGCGAATTTCAGGCGACAGGAGATTTCTGAAATTCAGCCCGACACTCAATGCTCAACCAGTGGTTCCCATACGTTTGCCAAGCAGCGGGGGTTCCATGGTGATGCAAATCTTAGAACGAAACAAGGACCGCCAGTGGACATGTTTAGATCCATTTCTTGCGACGAGCTTTCGAGAAGAAAGCCGGTGGAGTCAGCCTGGAGCATAGCGAGGTCTCGGTCGGATGGTGCAAATCCAGCGGAGGTGTGGCGTAAAGAAGGCGCCAAGCCGCCCCTCGGTGGTGGTGTCCGGGCATCTGCGATCGTTGCTTTGGAAACGGCAGCAAAGGACCTCTTGCAATCGGGCAATAGCAAACACCTAAAGGATGAGATGGATTTGGGCCACGGAAAATACAATCATTTGTCTTCTGGCGGGGATCAGGTTAGTAACCTTGGAAGCAGAGTTGACAGAAATGACGAGAGCAATTCGGACTCTGTGCAGGTTTTCTTTAGGTCTAGTGATCTTGGTCTTGGGGATTTAACAGTTCAGCTTAGTAGAGAAGCAGAACAAGCTAGGAGGGATGGCATTGGTGATATCTCTCACACAGATAGCAGCAGAGGGTCTTTTTGTAAGATAAAGAATCTAGATAATGGAAAGGAGTTTGTTGTGAACGAAGTAGGCGAAGATGGCATGTGGAACAAGCTCAGAGACGTGGAAACTGGTAGACAGCTAACCATGGAGGAGTTTGAGAGAGCTGTTGGGCATTCTCCTATTGTCCAGGAACTCATGACGGAAACGGGAAAGTGTGGAACGAGCAGAGGAGAAAGA

Fln Alignment:

Contig6495___MSSCSDEEDQ---FFESLDRIASTS----GSDTEEDGDYLNAVNKCQKSNTVRNGCTLPVAAAASLASKYEVWKGEPGSVXXXXXXXXXXXXLSDDRELQREPPANFRRQEISEIQPDTQCSTSGSHTFAKQRGFHGDANLRTKQGPPVDMFRSISCDELSRRKPVESAWSIARSRSDGANPAEVWRKEGAKPPLGGGVRASAIVALETAAKDLLQSGNSKHLKDEMDLGHGK-YNHLSSGGDQVSNLGSRVDRNDESNSDSVQV---FFRSSDLGLGDLTVQLSREAEQARRDGIGDISHTDSSRGSFCKIKNLDNGKEFVVNEVGEDGMWNKLRDVETGRQLTMEEFERAVGHSPIVQELM
F6H267______________MSKAGDEDDDDECFYESLDRVLSSSCSCSSSNSDDDADPNASPNYASEH-------PFPIPKFPIGASKYDIWISEPSSIEERRSRLLREMGLSNDPSLSRVKP-----------------------TADRSNG---------------DIGRSVSSDRLAGQG--EAGVVICRSKSDGA-----------KDQCNSSVCSPPILSICSVVN------NSKLVNSRSSGSNGSPIANAASASPNKPPTGKMCRRVDETRGDSTKSEPSFGRNSFSGSGNGT------GGECDEDSDCNVVARTVPHDQVCTIKNLDNGKEFVVNELREDGMWNKLKEVGTDRQLTMEEFEMCVGHSPIVQELM

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
436		75		25	0.996473
498	50			50	1.0
552	33	66			0.997452
555	33			66	0.997452
557			33	66	0.997452
558			33	66	0.997452
559		33		66	0.997452
564		80		20	0.995493
566		80		20	0.995493
568		80	20		0.995493
650		25	75		0.996473
653	75			25	0.996473
904	87		12		0.992554
905	12			87	0.992554
908			12	87	0.992554
909		12		87	0.992554
910		87		12	0.992554
915	12			87	0.992554
917	12			87	0.992554
918	12		87		0.992554
990	88		11		0.923564
991		11		88	0.923564
992			11	88	0.923564
993	11			88	0.923564
1046		87		12	0.992554
1118		12	87		0.992554

SSRs (tot: 2)

Start position	End position	Sequence	Length
925	936	TGC TGC TGC TGC	12
1373	1386	CCT CCT CCT CCT CC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain