SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6494

Length: 2143 nt

UniGene Fasta

>sp_v3.0_unigene6494
AATGTGGGAAAGAGAATTTAAAAAATGGTGCCCTTCATTTACTGTCATTCAATTTCATGGGGCTGGACGGGCAGGCTTATCCAAAAGACTAAATTTCTTGCAAAGTCTGGTGCACCACCTCCTTTCAATGTGGTGCTGGTATGCTATTCGCTTTTTGAAAGACACAGTGCACAACAGAAAGATGATCGTAAAGTGTTGAAGAAATGGAGATGGAGCTGTGTTCTAATGGATGAAGCACATGTTTTAAAAGATCGGGGCAGTTACAGAAGGAAAAACTTAATGGCGGTCGCGCAGAATGCAAAGCAACGGCTAATGCTTACAGGAACTCCACTGCAAAATGATCTCGAGGAGCTCTGGTCACTTTTGGAGTTTATGATGCCAAATATTTTTGAAACTGGTGATGTGGATTTGAAGAAGGTTCTGAGTGCTTCGGCAGAAGATACAAACTTAATTGCTCGTATCAAAACAATTTTGGGGCCATTTATTTTAAGGCGCTTAAAATCAGATGTTATGCAGCAGCTAGTGCAAAAAACTCAAAAGATAGAGTCTCTGACAATGGTACCAGAACAGGCTGCTGCATATAAAGAAGCTATCGAGGAGTATCGTGCAGCTTCTTTAGCACGTTTGGCGAAAAATGCAGGGTCTGCAGTAGAGAATGTTGTCGATTTCCTTCCTCGGCGCCAGATTTCTAACTACTTCACACAGTTTCGAAAGATTGCAAACCATCCTTTGCTAGTTAGGCGTATCTACACTGAAACCGATGTACACAATTTGGCTAAAATTTTGCATGCGAGAGGTGCTTTTGGTGATCAATGCACCCTGGACAGAGTCAGGGAAGAGATTCTGGGTTATAATGATTTTTCATTGCATCAGTTATCTCTTTCCTATGGCGGTGTTGGATGTCGAGGAACACTTGATGACCGACATGCTTTATGCTCTGCAAAATGTCAGGCGCTGTCAAAACTCCTACCTGTATTGCACCGTGAGGGTCATCGTGCTTTAATTTTCAGTCAGTGGACAGCAATGCTTGATATTCTTGAATGGGCATTGGACACAATTGACATGACCTACAGACGATTAGATGGCAGCACTCAAGTCTCAGAGCGGCAAACCATTGTTGACACTTTCAACAATGATCCTACAATTTTTGCGTGTCTTCTTTCAACCAGAGCAGGGGGCCAAGGTTTAAACCTTACTGGGGCAGACACAGTGATTATTCATGATATGGACTTTAATCCCCAAATGGATCGGCAAGCTGAAGATCGATGTCATCGTATAGGCCAGACAAAACCTGTGACTGTGTATCGGCTTGTGACTAAGGGAACAGTGGATGAAAATATTTTTGAAATAGCAAAACGTAAATTATTTTTAGATGCAGCAGTTCTTGAATCTGGAGTGGAAGAAGTCAATGAGAATGATAGCGATGCACGGACAATGGGAGAGATATTGGCTACAATCCTTGCTTCCACTCCAAGCTGAACAGTTGCTAGAAATTCGAATTCTGATTGAGTATAAGTTACTTGTGTACACAGGGTGCAATGAATTTTAAAGTATTGCTGAGCATAAACTGCTATAGATGAAATATTGAAGATGTTGAGATGTTCAGGCTTGACCCCCCTTATATTTCATCCAGCTGATATTCAAAATAGTGCAACCCAGGAAATTGTGAACCCACACAAAAATGGTTGCTACTATAAGTAGCAATGACTTTCAGATACTGTACTCTGCTTCCGAGAGCCTCTAACTGCTCTTGGAAGCATTACACAATACCACTAAATACGTGGTTTGTATTTCTATGAGAATGATATGATTGCCAGTACTAAGGTATGATTGCAAAAAGATGCAGTTTCAGTTAGAAATAGAACCCTGCACCTTACAAATGGCAACAGAAATTGTTTACTATTGGGGTGGGATGATTTTTAGCAGACCTACCTCTAACCTATGGGAATTTAAAAGTCTGGAGGCATGGTTGCATTTAGGGCTGTTGACTTTGTGTTTGTAGTGGAAACAGACACTGGATGCCTCTGAAAACCTGAAATTCCTGATGATGCAGAGTTATTGTATCATGTTATATGTTAACATTTAATTCTACGCATTCTATAGTGGATTCCAATATATCTGATCATTATATGTTTTGAAAATA

Ace file of the UniGene sp_v3.0_unigene6494

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb\|AAC97224.1\| putative helicase [Arabidopsis thaliana] gb\|AAL24339.1\| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana] gb\|AAO00936.1\| SNF2/RAD54 family (ETL1 subfamily) p	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	SNF2 super family	-	-	3.151e-12	-

Source	Gene names
Sma3	AT4g31900; At2g02090; At2g02090/F5O4.14; At3g12810; At3g57300; At4g31900; B1329D01.23; CHLREDRAFT_101843; CHLREDRAFT_135484; CHLREDRAFT_6783; CHR1506; CHR1507; CHR1508; CHR1515; CHR1523; CHR1527; CHR1529; CHR1545; CHR3506; CHR3509; CHR914; CHR922; CHR928;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin remodeling complex	GO:0016585	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleosome binding	GO:0031491	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	retrograde transport, endosome to Golgi	GO:0042147	Biological Process	-
Sma3	ATP-dependent chromatin remodeling	GO:0043044	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G02090.1	CHR19, CHA19, ETL1 SNF2 domain-containing protein / helicase domain-containing protein chr2:523481-526884 FORWARD LENGTH=763	72%
RefSeq	Arabidopsis thaliana	NP_178318.1	SNF2 and helicase domain-containing protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002314744.1	chromatin remodeling complex subunit [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 72 aas, putative chimeric sequence, your sequence is longer than subject: 485 - 377

Fln protein: MVPFIYCHSISWGWTGRLIQKTKFLAKSGAPPPFNVVLVCYSLFERHSAQQKDDRKVLKKWRWSCVLMDEAHVLKDRGSYRRKNLMAVAQNAKQRLMLTGTPLQNDLEELWSLLEFMMPNIFETGDVDLKKVLSASAEDTNLIARIKTILGPFILRRLKSDVMQQLVQKTQKIESLTMVPEQAAAYKEAIEEYRAASLARLAKNAGSAVENVVDFLPRRQISNYFTQFRKIANHPLLVRRIYTETDVHNLAKILHARGAFGDQCTLDRVREEILGYNDFSLHQLSLSYGGVGCRGTLDDRHALCSAKCQALSKLLPVLHREGHRALIFSQWTAMLDILEWALDTIDMTYRRLDGSTQVSERQTIVDTFNNDPTIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQMDRQAEDRCHRIGQTKPVTVYRLVTKGTVDENIFEIAKRKLFLDAAVLESGVEEVNENDSDARTMGEILATILASTPS*

Protein Length: 486

Fln nts: AATGTGGGAAAGAGAATTTAAAAA_-_ATGGTGCCCTTCATTTACTGTCATTCAATTTCATGGGGCTGGACGGGCAGGCTTATCCAAAAGACTAAATTTCTTGCAAAGTCTGGTGCACCACCTCCTTTCAATGTGGTGCTGGTATGCTATTCGCTTTTTGAAAGACACAGTGCACAACAGAAAGATGATCGTAAAGTGTTGAAGAAATGGAGATGGAGCTGTGTTCTAATGGATGAAGCACATGTTTTAAAAGATCGGGGCAGTTACAGAAGGAAAAACTTAATGGCGGTCGCGCAGAATGCAAAGCAACGGCTAATGCTTACAGGAACTCCACTGCAAAATGATCTCGAGGAGCTCTGGTCACTTTTGGAGTTTATGATGCCAAATATTTTTGAAACTGGTGATGTGGATTTGAAGAAGGTTCTGAGTGCTTCGGCAGAAGATACAAACTTAATTGCTCGTATCAAAACAATTTTGGGGCCATTTATTTTAAGGCGCTTAAAATCAGATGTTATGCAGCAGCTAGTGCAAAAAACTCAAAAGATAGAGTCTCTGACAATGGTACCAGAACAGGCTGCTGCATATAAAGAAGCTATCGAGGAGTATCGTGCAGCTTCTTTAGCACGTTTGGCGAAAAATGCAGGGTCTGCAGTAGAGAATGTTGTCGATTTCCTTCCTCGGCGCCAGATTTCTAACTACTTCACACAGTTTCGAAAGATTGCAAACCATCCTTTGCTAGTTAGGCGTATCTACACTGAAACCGATGTACACAATTTGGCTAAAATTTTGCATGCGAGAGGTGCTTTTGGTGATCAATGCACCCTGGACAGAGTCAGGGAAGAGATTCTGGGTTATAATGATTTTTCATTGCATCAGTTATCTCTTTCCTATGGCGGTGTTGGATGTCGAGGAACACTTGATGACCGACATGCTTTATGCTCTGCAAAATGTCAGGCGCTGTCAAAACTCCTACCTGTATTGCACCGTGAGGGTCATCGTGCTTTAATTTTCAGTCAGTGGACAGCAATGCTTGATATTCTTGAATGGGCATTGGACACAATTGACATGACCTACAGACGATTAGATGGCAGCACTCAAGTCTCAGAGCGGCAAACCATTGTTGACACTTTCAACAATGATCCTACAATTTTTGCGTGTCTTCTTTCAACCAGAGCAGGGGGCCAAGGTTTAAACCTTACTGGGGCAGACACAGTGATTATTCATGATATGGACTTTAATCCCCAAATGGATCGGCAAGCTGAAGATCGATGTCATCGTATAGGCCAGACAAAACCTGTGACTGTGTATCGGCTTGTGACTAAGGGAACAGTGGATGAAAATATTTTTGAAATAGCAAAACGTAAATTATTTTTAGATGCAGCAGTTCTTGAATCTGGAGTGGAAGAAGTCAATGAGAATGATAGCGATGCACGGACAATGGGAGAGATATTGGCTACAATCCTTGCTTCCACTCCAAGCTGA___ACAGTTGCTAGAAATTCGAATTCTGATTGAGTATAAGTTACTTGTGTACACAGGGTGCAATGAATTTTAAAGTATTGCTGAGCATAAACTGCTATAGATGAAATATTGAAGATGTTGAGATGTTCAGGCTTGACCCCCCTTATATTTCATCCAGCTGATATTCAAAATAGTGCAACCCAGGAAATTGTGAACCCACACAAAAATGGTTGCTACTATAAGTAGCAATGACTTTCAGATACTGTACTCTGCTTCCGAGAGCCTCTAACTGCTCTTGGAAGCATTACACAATACCACTAAATACGTGGTTTGTATTTCTATGAGAATGATATGATTGCCAGTACTAAGGTATGATTGCAAAAAGATGCAGTTTCAGTTAGAAATAGAACCCTGCACCTTACAAATGGCAACAGAAATTGTTTACTATTGGGGTGGGATGATTTTTAGCAGACCTACCTCTAACCTATGGGAATTTAAAAGTCTGGAGGCATGGTTGCATTTAGGGCTGTTGACTTTGTGTTTGTAGTGGAAACAGACACTGGATGCCTCTGAAAACCTGAAATTCCTGATGATGCAGAGTTATTGTATCATGTTATATGTTAACATTTAATTCTACGCATTCTATAGTGGATTCCAATATATCTGATCATTATATGTTTTGAAAATA

Fln Alignment:

Contig6494___LIARIKTILGPFILRRLKSDVMQQLVQKTQKIESLTMVPEQAAAYKEAIEEYRAASLARLAKNAGSAVENVVDFLPRRQISNYFTQFRKIANHPLLVRRIYTETDVHN--LAKILHARGAFGDQCTLDRVREEILGYNDFSLHQLSLSYGGVGCRGTLDDRHALCSAKCQALSKLLPVLHREGHRALIFSQWTAMLDILEWALDTIDMTYRRLDGSTQVSERQTIVDTFNN-DPTIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQMDRQAEDRCHRIGQTKPVTVYRLVTKGTVDENIFEIAKRKLFLDAAVLESGVEEVNENDSDARTMGEILATI
D5AD70______________VISKLHAILRPFLLRRLKEDVEKNLPSKKEIILYARMTEDQRKIQEHLLNKSLITYL-HARSEYGKAMKT--------RLENLMLQLRKNFNHPDLLQSQF-EISYHYPPVEKLM-------EQC-----------------------------------------GKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLCTSHSAECRMLKVAFDKLKLERVVIEKGQFHQERTNPGFSKESELLALL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
741	14		85		0.993533
742			85	14	0.993533
743		85	14		0.993533
744			85	14	0.993533
848	14		85		0.993533
852	11			88	0.923564
855	88			11	0.923564
1049	88			11	0.923564
1295		16		83	0.994512
2001	8		91		0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain