SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6475

Length: 2225 nt

UniGene Fasta

>sp_v3.0_unigene6475
TAAAATTGCGGTGATGCAAAAGGGTCAGGTCATCGAATTCGGTGGACACCAAGAACTGATAAGCAACCCAAATGGGGCATATACAGCTTTACTGCAGATGCAGCAAAAGGCCCCGTCACATGGTACTAACGCTGCATCAAATACTCTAATGCCATCCGGAGTAAATAGCCAAAGCTTAGATGATAACAAGTCACCCGCTAGATCAAATCAATTTGATAGTTGCATATCCGGCCTGGAACAAGAAGACCTAGAAGCCAATGCTGCGCCCAAATCTTCCTTCTGGAGGTTGCTTGCACTTGAATGTTCCAGAGTGGAAGAATACTCTCATGGGCTGTGTAGGCGCCTTTGGATATGCAGCAACTCAAATAGCTTATTCCGTCACTGTGGCAACCATGATTTCTGCGCTCTTTCTGAAAGACGGAAACGAGATCAGATCAAAAGTCGGAACTTATTGCATTCTTTTTATAGCCCTAGCAGCGCATGTATTTGCAGTGAATTTGGTTCAACACTATAACTTCGCAGTGGTGGGTGAGTTTCTAGCAAAAAGGATCCGCCAGAGAATGTTTTCAAAAATTCTTACATTCGAAGTTGGCTGGTTCGATCAGGACCAAAATTCCAGTGGAGCTGTTTGTTCAAAATTGGCCAAGGAAGCTAATGTGGTAAGATCCTTGGTGGGAGATCGTGTTTCACTCCTAGTGGAGTGTGTCTCTGGAGTAACTATAACGGTGACTCTAGGAATGTTGGTAGCTTGGAGACTTGCTATTGTCTTGATCGCTGTGCAGCCGTTGATGGTGCTTTGTTTCTACACCAGAAACGTCCTCCTTAAAAGTGTTTCGGGCAAGTCTATTAAAGCGCAGAATCAAGGTAGCCAAGCGGCCTTCGAATGTGTCACACATCATAGAACCATAGCGGCTTTTTGCTCTCAAGACAAAATTATTAATATTTTTGACTCCACACAGACAGGGCCACGCAGGGAGATCAATAAACAGTCTTGGTACGCAGGATTGGCCCTGGGAACTTCTAAGTTTCTTGAAATATGCTATTGGCCATTTGAGTTTTGGTACGGAGGGAAGCTCATAGCACAAGGTGTTATCAGTTTTCATGCTTTTTTATTGAACCATTTTATATTTGGAAGATTGGGTCGCATGATAGCGGATGCTGGAAGTATGACTTCCGACCTGGCCAAAGGGTCTGATGCTGTCACGTCCGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAACCCAGAGAACCATGGTGCGGTTAACCCTGAGAAAGTCCAAGGCTATGTAGCGCTCAATAGTGTGGACTTTGCTTATCCAGCTCGTCCAAATGCTATGATCTTGAGAAACTTCAGCCTCAAAATCAACGCAGGGAGCAGCGTGGCACTAGTTGGAAAGAGTGGGTGTGGTAAGTCCACTATCATCGGATTGATAGAGAGATTCTATGATCCGCTGAAAGGGACAGTACTCGTTGATGGCAAAGATATAAGGAGCTTCAATTTACGGTCACTGAGAGAGCATATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTGCTGGGAGCATCCGGGAGAACATTGCCTATGGTAAAGAGAACGCAAGTGAGGCGGAAATAATAGATGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGAGCTTGAAGGATGGATACGAAACGAGCACAGGGAACCGGGGAACGCAGCTGTCTGGGGGCCAGAAGCAAAGGATAGCGATAGCAAGGGCAATTATAAAGAATCCAAGCATCTTGTTGTTGGACGAGGCAACCAGTGCATTGGATGCTTATTCGGAGAAGGTAGTTCAGGGGGCATTGGATCGAGCGACGGTGGGTCGAACGACTGTCACTGTAGCTCATCGACTGGCGTCAGTTCAAAATGCTGACTGTATAGTAGTTATTGAAAAGGGGAGCGTTGTTGAGCAGGGAAATCACTTGCATCTCATGGAGAAAGGCGAAGGCGGTGCATATTTTGGTCTTGTCAAACTGCAGCAGCGTCAGTAGGCAATTTATATTTGTATGCAAAAGGATCGCCATGGGTCACAATTGTATCCATAGTTCCGAAGACCCGAAGTTTTCAGGCGTCATAACTGTCACATTGACAACCATGGCGTTCTCTGTACCAAGAATTATTAACTGTCACATTGACAACCATGGCGTTCTCTGTACCAAGAATTATTAACGTAATAACGGAATAAATAAATTCGG

Ace file of the UniGene sp_v3.0_unigene6475

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Putative multidrug resistance protein; AltName: Full=P-glycoprotein dbj\|BAD16475.1\| putative multidrug resistance p-glycoprotein [Oryza sativa Japonica Group]	-	-	55%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	41%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphate-transporting ATPase.	EC:3.6.3.27	-	5.623e-15	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	2.369e-31	-

Source	Gene names
Sma3	At1g02520; At1g02530; At1g10680; At1g27940; At1g28010; At2g36910; At2g47000; At3g28344; At3g28345; At3g28360; At3g28380; At3g28390; At3g28415; At3g28860; At3g30875; At3g62150; At4g01830; At4g25960; At5g46540; CMDR1; F13K9.11; F13K9.5; F14M4.17; F20B24.12;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	auxin efflux	GO:0010315	Biological Process	-
Sma3	basipetal auxin transport	GO:0010540	Biological Process	-
Sma3	acropetal auxin transport	GO:0010541	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G28345.1	ABC transporter family protein chr3:10593921-10598775 REVERSE LENGTH=1240	58%
RefSeq	Arabidopsis thaliana	NP_189475.1	ABC transporter B family member 15 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002324019.1	multidrug/pheromone exporter, MDR family, ABC transporter family, partial [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 673 - 1316

Fln protein: KLR*CKRVRSSNSVDTKN**ATQMGHIQLYCRCSKRPRHMVLTLHQIL*CHPE*IAKA*MITSHPLDQINLIVAYPAWNKKT*KPMLRPNLPSGGCLHLNVPEWKNTLMGCVGAFGYAATQIAYSVTVATMISALFLKDGNEIRSKVGTYCILFIALAAHVFAVNLVQHYNFAVVGEFLAKRIRQRMFSKILTFEVGWFDQDQNSSGAVCSKLAKEANVVRSLVGDRVSLLVECVSGVTITVTLGMLVAWRLAIVLIAVQPLMVLCFYTRNVLLKSVSGKSIKAQNQGSQAAFECVTHHRTIAAFCSQDKIINIFDSTQTGPRREINKQSWYAGLALGTSKFLEICYWPFEFWYGGKLIAQGVISFHAFLLNHFIFGRLGRMIADAGSMTSDLAKGSDAVTSVFEILDRNSLINPENHGAVNPEKVQGYVALNSVDFAYPARPNAMILRNFSLKINAGSSVALVGKSGCGKSTIIGLIERFYDPLKGTVLVDGKDIRSFNLRSLREHIALVGQEPTLFAGSIRENIAYGKENASEAEIIDAAKAANAHEFISSLKDGYETSTGNRGTQLSGGQKQRIAIARAIIKNPSILLLDEATSALDAYSEKVVQGALDRATVGRTTVTVAHRLASVQNADCIVVIEKGSVVEQGNHLHLMEKGEGGAYFGLVKLQQRQ*

Protein Length: 674

Fln nts: TAAAATTGCGGTGATGCAAAAGGGTCAGGTCATCGAATTCGGTGGACACCAAGAACTGATAAGCAACCCAAATGGGGCATATACAGCTTTACTGCAGATGCAGCAAAAGGCCCCGTCACATGGTACTAACGCTGCATCAAATACTCTAATGCCATCCGGAGTAAATAGCCAAAGCTTAGATGATAACAAGTCACCCGCTAGATCAAATCAATTTGATAGTTGCATATCCGGCCTGGAACAAGAAGACCTAGAAGCCAATGCTGCGCCCAAATCTTCCTTCTGGAGGTTGCTTGCACTTGAATGTTCCAGAGTGGAAGAATACTCTCATGGGCTGTGTAGGCGCCTTTGGATATGCAGCAACTCAAATAGCTTATTCCGTCACTGTGGCAACCATGATTTCTGCGCTCTTTCTGAAAGACGGAAACGAGATCAGATCAAAAGTCGGAACTTATTGCATTCTTTTTATAGCCCTAGCAGCGCATGTATTTGCAGTGAATTTGGTTCAACACTATAACTTCGCAGTGGTGGGTGAGTTTCTAGCAAAAAGGATCCGCCAGAGAATGTTTTCAAAAATTCTTACATTCGAAGTTGGCTGGTTCGATCAGGACCAAAATTCCAGTGGAGCTGTTTGTTCAAAATTGGCCAAGGAAGCTAATGTGGTAAGATCCTTGGTGGGAGATCGTGTTTCACTCCTAGTGGAGTGTGTCTCTGGAGTAACTATAACGGTGACTCTAGGAATGTTGGTAGCTTGGAGACTTGCTATTGTCTTGATCGCTGTGCAGCCGTTGATGGTGCTTTGTTTCTACACCAGAAACGTCCTCCTTAAAAGTGTTTCGGGCAAGTCTATTAAAGCGCAGAATCAAGGTAGCCAAGCGGCCTTCGAATGTGTCACACATCATAGAACCATAGCGGCTTTTTGCTCTCAAGACAAAATTATTAATATTTTTGACTCCACACAGACAGGGCCACGCAGGGAGATCAATAAACAGTCTTGGTACGCAGGATTGGCCCTGGGAACTTCTAAGTTTCTTGAAATATGCTATTGGCCATTTGAGTTTTGGTACGGAGGGAAGCTCATAGCACAAGGTGTTATCAGTTTTCATGCTTTTTTATTGAACCATTTTATATTTGGAAGATTGGGTCGCATGATAGCGGATGCTGGAAGTATGACTTCCGACCTGGCCAAAGGGTCTGATGCTGTCACGTCCGTGTTTGAAATTTTGGACAGAAATAGCCTTATAAACCCAGAGAACCATGGTGCGGTTAACCCTGAGAAAGTCCAAGGCTATGTAGCGCTCAATAGTGTGGACTTTGCTTATCCAGCTCGTCCAAATGCTATGATCTTGAGAAACTTCAGCCTCAAAATCAACGCAGGGAGCAGCGTGGCACTAGTTGGAAAGAGTGGGTGTGGTAAGTCCACTATCATCGGATTGATAGAGAGATTCTATGATCCGCTGAAAGGGACAGTACTCGTTGATGGCAAAGATATAAGGAGCTTCAATTTACGGTCACTGAGAGAGCATATAGCTCTTGTAGGGCAGGAGCCAACTCTTTTTGCTGGGAGCATCCGGGAGAACATTGCCTATGGTAAAGAGAACGCAAGTGAGGCGGAAATAATAGATGCTGCCAAGGCTGCCAATGCCCATGAATTCATTTCGAGCTTGAAGGATGGATACGAAACGAGCACAGGGAACCGGGGAACGCAGCTGTCTGGGGGCCAGAAGCAAAGGATAGCGATAGCAAGGGCAATTATAAAGAATCCAAGCATCTTGTTGTTGGACGAGGCAACCAGTGCATTGGATGCTTATTCGGAGAAGGTAGTTCAGGGGGCATTGGATCGAGCGACGGTGGGTCGAACGACTGTCACTGTAGCTCATCGACTGGCGTCAGTTCAAAATGCTGACTGTATAGTAGTTATTGAAAAGGGGAGCGTTGTTGAGCAGGGAAATCACTTGCATCTCATGGAGAAAGGCGAAGGCGGTGCATATTTTGGTCTTGTCAAACTGCAGCAGCGTCAGTAG___GCAATTTATATTTGTATGCAAAAGGATCGCCATGGGTCACAATTGTATCCATAGTTCCGAAGACCCGAAGTTTTCAGGCGTCATAACTGTCACATTGACAACCATGGCGTTCTCTGTACCAAGAATTATTAACTGTCACATTGACAACCATGGCGTTCTCTGTACCAAGAATTATTAACGTAATAACGGAATAAATAAATTCGG

Fln Alignment:

Contig6475___LNVPEWKNTLMGCVGAFGYAATQIAYSVTVATMISALFLKDGNEIRSKVGTYCILFIALAAHVFAVNLVQHYNFAVVGEFLAKRIRQRMFSKILTFEVGWFDQDQNSSGAVCSKLAKEANVVRSLVGDRVSLLVECVSGVTITVTLGMLVAWRLAIVLIAVQPLMVLCFYTRNVLLKSVSGKSIKAQNQGSQAAFECVTHHRTIAAFCSQDKIINIFDSTQTGPRREINKQSWYAGLALGTSKFLEICYWPFEFWYGGKLIAQGVISFHAFLLNHFIFGRLGRMIADAGSMTSDLAKGSDAVTSVFEILDRNSLINPENHGAVNPEKVQGYVALNSVDFAYPARPNAMILRNFSLKINAGSSVALVGKSGCGKSTIIGLIERFYDPLKGTVLVDGKDIRSFNLRSLREHIALVGQEPTLFAGSIRENIAYGKEN-XXXXXXXXXXXXXXXHEFISSLKDGYETSTGNRGTQLSGGQKQXXXXXXXXXKNPSILLLDEATSALDAYSEKVVQGALDXXXXXXXXXXXXHRLASVQNADCIVVIEKGSVVEQGNHLHLMEKGEGGAYFGLVKLQQ
E6Y0T0______________LNKPEIPVFILGSIAAAMNGMIFPVFGLLLSSVIK-VFYEPPHELRKDAKFWALMFIVLAVTCFIVAPTQMYCFSIAGGRLVQRIRSLTFSKVVYQEISWFDDNENSSGAISARLSTDAATVRSLVGDALSLVVQNIATIIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKLVYEEASQVANDAVGSIRTVASFCAEDKVISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFTQYALSFWVGARLVEDGKTTFDKVFKVFFALSMAAAGISQSAGLSPDLAKAKSSINSVFKILDRPSKIDANDESGTILDNVKGDIEFQHVSFKYPTRPDVQIFRDLCLFVHSGKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGAVTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQDALDRVKVNRSTIVIAHRLSTIKDADLIAVVKNGKIAEQGKHDELLKK-RNGAYASLVQLHK

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
626	33			66	0.997452
627	33		66		0.997452
629			33	66	0.997452
647	16		83		0.994512
664		16	83		0.994512
665	83	16			0.994512
666	16			83	0.994512
674	20		80		0.995493
689	80		20		0.995493
692		80		20	0.995493
705		20	80		0.995493
718		80		20	0.995493
725	20	20	60		0.99255
728			80	20	0.995493
731	20			80	0.995493
734	80		20		0.995493
743			80	20	0.995493
749	11			88	0.923564
753	88	11			0.923564
756		88		11	0.923564
767		88	11		0.923564
773	11	77		11	0.968132
794			88	11	0.923564
806		87		12	0.992554
809		75		25	1.0
810	87	12			0.992554
814	87		12		0.992554
830		12		87	0.992554
839		87		12	0.992554
842	12		87		0.992554
851	87		12		0.992554
866		12		87	0.992554
887		16		83	0.994512
901	20		80		0.995493
926	80		20		0.995493
927		20	80		0.995493
929		60	40		1.0
931	75		25		0.996473
939	75	25			0.996473
942	75			25	0.996473
943	25			75	0.996473
950		75		25	0.996473
1127	40			60	1.0
1145		50		50	1.0
1154		42	57		1.0
1175		57	42		1.0
1205		7	69	23	1.0
1208		69	7	23	1.0
1232	23			76	1.0
1244		66		33	1.0
1251	72		27		1.0
1255	72	27			1.0
1258	27		72		1.0
1259		27		72	1.0
1261		72	27		1.0
1272		25	75		1.0
1295		23	53	23	1.0
1298		75	25		1.0
1313		18		81	0.999994
1335	18		81		0.999994
1337	18			81	0.999994
1343		80		20	0.999996
1352		87		12	0.992554
1361		87		12	0.992554
1388	60		40		1.0
1400	16		66		0.988813
1481		75	25		0.996473
1505	66		33		0.997452
1512		66		33	0.997452
1826		20	80		0.995493
1832	85		14		0.993533
1834		14		85	0.993533
1838		14		85	0.993533
1840			85	14	0.993533
1841	85			14	0.993533
1843		42	14	42	1.0
1845	85			14	0.993533
1847	14		85		0.993533
1848		14	85		0.993533
1850		14	85		0.993533
2039		14	71	14	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain