SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6471

Length: 1625 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6471 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glycosyltransferase 73B4 [Arabidopsis thaliana] sp\|Q7Y232.1\|U73B4_ARATH RecName: Full=UDP-glycosyltransferase 73B4; AltName: Full=Flavonol 3-O-glucosyltransferase UGT73B4 gb\|AAP37678.1\| At2g15490 [Arabidopsis thaliana] dbj\|BAE99671.1\| putative glucosy	-	-	0.0	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	Chromosome chr2 scaffold_97, whole genome shotgun sequence	-	-	2.442e-10	-

Source	Gene names
Sma3	GSVIVT00036631001; GSVIVT00038723001; GSVIVT00038735001; GSVIVT00038744001; POPTRDRAFT_646335; RCOM_0865380; VITISV_004870; VITISV_017571; VITISV_034975;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tobamoviral movement protein	IPR001022	-	0.0	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303461.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMC6

Fln msg: STOP codon was not found. Distance to subject end: 32 aas, atg_distance in limit (1-15): atg_distance = 14, No stop codon before M and low homology subject,

Fln protein: MAEGGAEIVAIPFNGQGHVFPCIELCKRLAARGLHITIIADSSVSATLRTVADQSSSSGLRITFIELESEEEEEELGDSAPHPDHHGHDHMEQQQQKAMEEILQKKFSTPPLCIIGDVMMGWVPELCKKLGIPRVSFFTSGACSLAFEYAIWKHRSSLDQLQHDDKQAAFLVPGFPPSMSITPSDLQHISPPFPPGGGGPPPPPGRGHPPPPAGGPQGSKPKFPPGRRPPPRPPGSKSHSPPWMNGIKDCVGILVNTCEELESPFIEYIGKEIEIPIWAAGPFLPASSFLDQSGSGTTVTHDSAIRGKKSSIDEEQCLEWLNSKAPASVIFVSFGSEVGPSVEETRELAHGLEAAQKPFIWVLQDHYHGHPPPPDHPPCDQGSNEGEGAEDMLPEGFEDRNEGLGLIIRGWAPQLLILSHRSTGGFLSHCGWNSTVESIGHGVPILAWPIRGDQHYNAKLLVKDLQIAAMIDKPTHDGLVSRKEIDNGVKLLMESEHGTQLRERAASLKLKFRSTCFLSSQAVIDTF

Protein Length: 528

Fln nts: CGTCGTGACCTTGGCTGTCACTCGATTATCGATCTACAAAAAT_-_ATGGCGGAAGGAGGAGCTGAAATAGTGGCGATTCCCTTCAACGGGCAGGGTCATGTCTTCCCCTGCATTGAGCTTTGCAAGAGACTTGCAGCTCGAGGGCTGCACATTACAATTATAGCGGACTCTTCAGTCTCTGCTACTTTACGCACTGTAGCCGATCAGTCCTCCTCCTCGGGCCTTCGCATCACATTCATCGAATTGGAATCCGAGGAGGAGGAGGAGGAGTTGGGGGATTCAGCCCCACATCCTGATCATCATGGTCACGATCATATGGAGCAGCAGCAGCAGAAGGCCATGGAAGAGATTCTACAGAAGAAGTTCTCAACTCCACCTCTCTGCATCATTGGCGACGTTATGATGGGATGGGTACCCGAATTGTGCAAAAAATTGGGTATTCCCAGAGTCTCGTTCTTCACTTCTGGGGCCTGTTCTTTGGCCTTCGAATATGCAATCTGGAAGCACCGAAGCTCTCTTGATCAACTTCAACATGATGACAAGCAGGCCGCCTTCTTAGTCCCTGGTTTCCCTCCCTCCATGTCTATTACTCCCTCCGATTTGCAGCATATATCTCCTCCCTTTCCTCCCGGAGGTGGTGGTCCTCCTCCACCGCCTGGACGAGGGCATCCACCTCCTCCTGCAGGTGGGCCTCAAGGTTCCAAGCCCAAATTTCCGCCTGGACGAAGGCCTCCGCCTCGTCCTCCTGGGTCGAAATCCCATTCTCCGCCATGGATGAATGGGATCAAAGACTGCGTGGGGATTTTGGTCAACACGTGCGAGGAGCTGGAATCTCCGTTCATTGAATACATAGGTAAGGAAATAGAGATACCCATCTGGGCGGCAGGGCCTTTTCTGCCCGCTTCGTCTTTTTTAGATCAGTCGGGGTCAGGCACCACTGTAACACATGATAGCGCAATCCGTGGCAAGAAAAGCAGTATCGATGAAGAGCAATGTCTGGAATGGTTGAATTCCAAGGCGCCTGCATCTGTTATCTTCGTTTCTTTCGGTAGCGAAGTCGGACCCTCTGTTGAAGAGACCAGAGAGCTCGCTCATGGACTAGAAGCTGCACAGAAGCCATTCATTTGGGTTTTACAGGATCACTACCATGGTCATCCTCCCCCACCTGATCATCCTCCTTGTGATCAGGGTAGTAATGAAGGAGAAGGGGCAGAGGATATGCTTCCCGAGGGTTTCGAAGATCGAAACGAGGGACTGGGTTTGATCATTCGTGGTTGGGCGCCTCAGCTGCTCATACTCTCTCATCGCTCCACTGGAGGATTTTTGTCGCACTGTGGGTGGAATTCCACAGTAGAAAGCATAGGCCACGGCGTTCCAATCTTGGCATGGCCCATCAGAGGAGATCAGCATTACAATGCTAAATTGCTCGTCAAGGATCTCCAGATTGCAGCCATGATCGACAAGCCAACACATGATGGGCTGGTGAGCAGGAAGGAAATTGACAATGGAGTGAAGTTGTTAATGGAAAGCGAGCATGGAACCCAGTTAAGAGAAAGAGCAGCCTCTCTGAAACTCAAGTTCCGCTCTACCTGTTTCTTATCGTCCCAAGCCGTGATAGACACGTTTC

Fln Alignment:

Contig6471___IVAIPFNGQGHVFPCIELCKRLAAR-GLHITIIADSSVSATLRTVADQSSSSGLRITFIXXXXXXXXXXLG--------DSAPH----PDHHGHDHMEQQQQKAMEEILQKKFSTPPLCIIGDVMMGWVPELCKKLGIPRVSFFTSGACSLAFEYAIWKHRSSLDQLQHDDKQA-AFLVPGFP
B8LMC6______________VVMFPFMAQGHIIPFLELAKLLAKRTGFAITI---ANTPLNIRSLRPEIDSTGAGLDIRLAELPFSTAGHGLPPQTENTDFLPYNLFFPFLQASEQLEPHFERLICRICQEDGGRLPLCIISDMAFGWTLDVGNRLGIPRIQFCTAGAYGTSVYYSLWTH------LPHNQTHADDFVLPDMP

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
608	75		25		0.996473
634		14		85	0.993533
727	71		14		0.984337
816		80		20	0.999996
821		10	90		0.90298
822		10		90	0.90298
823		10	90		0.90298
824	11			88	0.923564
975	14		85		0.993533
985		12		87	0.992554
994	87	12			0.992554
997	87			12	0.992554
1003		12		87	0.992554
1006	12		87		0.992554
1007			87	12	0.992554
1023	83	16			0.994512
1024			16	83	0.994512
1084		16	33	50	1.0
1097		28		71	1.0
1112	14			85	0.993533
1120	60		40		1.0
1179	75	25			0.996473
1186		25	75		0.996473
1204	33			66	0.997452
1246	50		50		1.0
1272	50		50		1.0
1319	75			25	0.996473
1331		66		33	0.997452
1392	33		66		1.0
1459	14		85		0.993533
1470	28	71			1.0
1477	71		28		1.0
1494		85		14	0.993533
1495		14		85	0.993533
1496		71	28		1.0
1535	71	28			1.0
1546	33	66			1.0
1580		66	33		1.0
1595			33	66	1.0
1598			33	66	1.0
1607	50	33	16		1.0
1608	50	16			1.0
1609	16	33		50	1.0
1610		50	16	33	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
1295	1308	CTG CTG CTG CTG CT	14
1358	1375	CTC CTC CTC CTC CTC CTC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain