SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6469

Length: 2645 nt

UniGene Fasta

>sp_v3.0_unigene6469
AATGTCTTCCCAAGGTCGGGTGAAGAAGGTATAATGGACCCCATGGAAAGGGCTGCCAAGGTCCTGGGATCGAGTCCAGGGCACAAAAATATGATGGGCTGTTCTTCGTCAGGTGTGAAGGTAGAACCTGAGATTGATGGGCTTCTGGCAAACGCTGGGTATACTGTAAAGGCCTCTGATTTAGCCCATGTTGCACAGAGGCTGGAGCAACTGGAGAGCATTATGGGCACGGTTCAAGACCCGGGAATATCTCATTTGGCTTCCGAAGCTGTGCATTATAACCCCTCGGATTTAGCTGGCTGGATCGAATCAATGTTCGGGGAGCTTAATCCAGGCGCAGACATGCCAGTTCCATTTGGGGACAGGGGATCTCTGATCGATTCTTCACAGTTTCATAAGCCGATTCAGGATGATCCCAGTCTTTCTGCTATGGACTTGGCGCTCATTCAAGAATATGGCTTGCAGTTTAATGGAAACCAAGCATCTAACCCTCAGGGTTTTTCCCCGGATTCTAATCCCTCTATTAGATGCAATATTTTCTCTGGACTGCCTCTGCGTTCTGGGGATTCTACCAGACACATGAACTTTCAGGCGCGAAGCTTTAGTGCCCAGTCCAGCGACGAGGGTTCGAGTCTCTCTAGTACCCGCTTGGGAACCGCACAACAGAGCATAGATAACGGAGCGCAAGAATCAGGGATTCGCGTGGTGCACTTGCTTATGGGATGTGCGGAGGCTATACAGAGAAACAATTTGAAGGTAGCCAGCGATTTAGTCAGAGAGATTCGAATGACGGTGAATTCTGCCCCCTGTGGAGCAATGGGCAAAGTAGCTTCCCACTTTGTTGAAGCTCTGGCGCGGCGGATTTGTGGATTGAATGGCGCAGAATCCAATATGTCACAGGCAGATGCGCAATCCGAGATTCTCTACCACCATTTCTACGAGGTTTGCCCTTATCTCAAGTTCGCTCATTTTACTGCAAACCAGGCCATTCTTGAAGCTTTTGAAGGGCACGGCAGCGTCCATGTGATAGACCTAAATTTGATGCACGGCTTACAATGGCCGGCTCTGATTCAGGCCCTAGCTCTCAGGCCCGGCGGGCCGCCTTTTCTGAGATTAACAGCCATTGGACCCCGGCAGCCCGATGGCAGAGACGTGCTGCAAGAAATAGGGATGAAGCTAGCCCAGTTCGCCGAATCTGTTAACGTAGAGTTCGATTTCAGAGGTGTCATGGCCGATAAGCTGGAGGATATAAAGCCTTGGATGTTCCAGGTGAAGCCTGGCGAAGTAGTTGCTGTCAATTCCGTTCTGCAGCTCCACCGTTTGCTTTACATTGATGCCCCTACAGGGTCTTCACCCATTGATGTAGTCCTCAAGTCCATCGGTAGCCTGAGGCCCAAGATTGTGACAGTTGTCGAGCACGAGGCCAATCACAATGGACCTGTTTTTCTGGACAGATTCGTGGAGGCATTGCATTATTATTCAACCATGTTCGATTCTCTAGAAGCATGCAATGTGCTTCCAAATAGTATGGAGAAATTGTTGGCAGAGTTGTATATTCAGAAAGAGATTTGCAATATTGTTGCGTGTGAAGGTCGTTATAGAATAGAGAGACACGAAACCCTTTCTCACTGGAGGGTACGCTTGGGCAGAGCAGGTTTCAGGCCATCACATTTAGGCTCCAACGCATTTAAACAGGCAAGGATGCTCTTGACCTTGTTTTCTGGAGAAGGTTACACTGTTGAGGAGAATAACGGTTCCCTAACACTGGGCTGGCACAGCCGGCCCCTCATAGCTGCATCTGCATGGCAAGGCTCCTAGGGCTTAGGGTTCAGTTATTTGTATCATTTCTTAGCATCTTGCAGGCTCAGTAACTGTATAAGAGGAGAATAAATCTCAAAGCTTCCAAGTTTTTAAGACAGTTAAATACTCCTATCCTGTGGTGTCTGGATAAACATACCAGAATTAATGAATGCTTCACAACAATGTGATATGTCTCTGTCTGGATGAACACATTAGAGTTCAGGATGAAATGCTGGCTCGTAAGATAAATGCTGCCAGACTGATTCAAAATGGGCATGGCTAGGCTAAGCTAAGCACTGATGGAAAGAGTCAATCATCTGATGTAAAAACAATGAGTCAATCATTTACTTATTGTATGGTGCTTAACATGGGCAAAAACTCATGACTACACCTCTCTCTTTTTCTGAATGTATTTTCTTCTCCTTCCACTGTCTTCTCCGCCCTTTTTTTCACAAAAGTTGCAAATCCCCTTGTTGAAAATGTAATCTTAGCAATTCAGCAATGATATTTACGTGTTTATGAGGTTTTGGAATCTAGCCAGAATGTACAAAACTCAATTCCAGCTACAGAGATTGCTCAGAAATCAAAAAGTTTTTCTTTGGCAGAGTAGCATAGAGCACAAATTGCATTTAATTTGCTGTTGGCTTTGGCCAGTGCAGCAACAGCAGAGTCAGCAGGTATAGGCAGGGAGTTATAACTGCCCTAACTAAAGCAGTTATCATATATTTAGAGTATAGGAGATTTGATAGTCTCAAAAGCTATTTTAAGCATTTCCCTTTGTAATATTATTCCTTTTACCTTTGTTTCATTAATGTTTAAATATTATGCAAAAAGCTTTGAATGCA

Ace file of the UniGene sp_v3.0_unigene6469

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DELLA protein n=2 Tax=Malus x domestica RepID=Q0HA68_MALDO	-	-	0.0	54%
FL-Next	sp=DELLA protein GAI1; Vitis vinifera (Grape).	-	-	0.0	52%
Sma3	DELLA protein	-	-	1.59748e-43	-

Source	Gene names
Sma3	At1g14920; At1g66350; At2g01570; At3g03450; At5g17490; BoGAI; BrGAI; CRY; D8; DELLA; DELLAa; DELLAb; F10B6.34; F2I9.19; GAI; GAI-A; GAI-B; GAI1; GAI2; GAIP; GAIPB; GAL1; GAL2; GRAS85; GRAS86; GRAS87; GRAS88; GRS; GSVIVT00030538001; GSVIVT00032990001; K3M1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	negative regulation of gibberellic acid mediated signaling pathway	GO:0009938	Biological Process	-
Sma3	negative regulation of seed germination	GO:0010187	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	phloem transport	GO:0010233	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	regulation of oxygen and reactive oxygen species metabolic process	GO:0080010	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01570.1	RGA1, RGA GRAS family transcription factor family protein chr2:255581-257344 REVERSE LENGTH=587	48%
RefSeq	Arabidopsis thaliana	NP_178266.1	DELLA protein RGA [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002305198.1	DELLA domain GRAS family transcription factor [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8S4W7

Fln msg:

Fln protein: MDPMERAAKVLGSSPGHKNMMGCSSSGVKVEPEIDGLLANAGYTVKASDLAHVAQRLEQLESIMGTVQDPGISHLASEAVHYNPSDLAGWIESMFGELNPGADMPVPFGDRGSLIDSSQFHKPIQDDPSLSAMDLALIQEYGLQFNGNQASNPQGFSPDSNPSIRCNIFSGLPLRSGDSTRHMNFQARSFSAQSSDEGSSLSSTRLGTAQQSIDNGAQESGIRVVHLLMGCAEAIQRNNLKVASDLVREIRMTVNSAPCGAMGKVASHFVEALARRICGLNGAESNMSQADAQSEILYHHFYEVCPYLKFAHFTANQAILEAFEGHGSVHVIDLNLMHGLQWPALIQALALRPGGPPFLRLTAIGPRQPDGRDVLQEIGMKLAQFAESVNVEFDFRGVMADKLEDIKPWMFQVKPGEVVAVNSVLQLHRLLYIDAPTGSSPIDVVLKSIGSLRPKIVTVVEHEANHNGPVFLDRFVEALHYYSTMFDSLEACNVLPNSMEKLLAELYIQKEICNIVACEGRYRIERHETLSHWRVRLGRAGFRPSHLGSNAFKQARMLLTLFSGEGYTVEENNGSLTLGWHSRPLIAASAWQGS*

Protein Length: 596

Fln nts: AATGTCTTCCCAAGGTCGGGTGAAGAAGGTATA_-_ATGGACCCCATGGAAAGGGCTGCCAAGGTCCTGGGATCGAGTCCAGGGCACAAAAATATGATGGGCTGTTCTTCGTCAGGTGTGAAGGTAGAACCTGAGATTGATGGGCTTCTGGCAAACGCTGGGTATACTGTAAAGGCCTCTGATTTAGCCCATGTTGCACAGAGGCTGGAGCAACTGGAGAGCATTATGGGCACGGTTCAAGACCCGGGAATATCTCATTTGGCTTCCGAAGCTGTGCATTATAACCCCTCGGATTTAGCTGGCTGGATCGAATCAATGTTCGGGGAGCTTAATCCAGGCGCAGACATGCCAGTTCCATTTGGGGACAGGGGATCTCTGATCGATTCTTCACAGTTTCATAAGCCGATTCAGGATGATCCCAGTCTTTCTGCTATGGACTTGGCGCTCATTCAAGAATATGGCTTGCAGTTTAATGGAAACCAAGCATCTAACCCTCAGGGTTTTTCCCCGGATTCTAATCCCTCTATTAGATGCAATATTTTCTCTGGACTGCCTCTGCGTTCTGGGGATTCTACCAGACACATGAACTTTCAGGCGCGAAGCTTTAGTGCCCAGTCCAGCGACGAGGGTTCGAGTCTCTCTAGTACCCGCTTGGGAACCGCACAACAGAGCATAGATAACGGAGCGCAAGAATCAGGGATTCGCGTGGTGCACTTGCTTATGGGATGTGCGGAGGCTATACAGAGAAACAATTTGAAGGTAGCCAGCGATTTAGTCAGAGAGATTCGAATGACGGTGAATTCTGCCCCCTGTGGAGCAATGGGCAAAGTAGCTTCCCACTTTGTTGAAGCTCTGGCGCGGCGGATTTGTGGATTGAATGGCGCAGAATCCAATATGTCACAGGCAGATGCGCAATCCGAGATTCTCTACCACCATTTCTACGAGGTTTGCCCTTATCTCAAGTTCGCTCATTTTACTGCAAACCAGGCCATTCTTGAAGCTTTTGAAGGGCACGGCAGCGTCCATGTGATAGACCTAAATTTGATGCACGGCTTACAATGGCCGGCTCTGATTCAGGCCCTAGCTCTCAGGCCCGGCGGGCCGCCTTTTCTGAGATTAACAGCCATTGGACCCCGGCAGCCCGATGGCAGAGACGTGCTGCAAGAAATAGGGATGAAGCTAGCCCAGTTCGCCGAATCTGTTAACGTAGAGTTCGATTTCAGAGGTGTCATGGCCGATAAGCTGGAGGATATAAAGCCTTGGATGTTCCAGGTGAAGCCTGGCGAAGTAGTTGCTGTCAATTCCGTTCTGCAGCTCCACCGTTTGCTTTACATTGATGCCCCTACAGGGTCTTCACCCATTGATGTAGTCCTCAAGTCCATCGGTAGCCTGAGGCCCAAGATTGTGACAGTTGTCGAGCACGAGGCCAATCACAATGGACCTGTTTTTCTGGACAGATTCGTGGAGGCATTGCATTATTATTCAACCATGTTCGATTCTCTAGAAGCATGCAATGTGCTTCCAAATAGTATGGAGAAATTGTTGGCAGAGTTGTATATTCAGAAAGAGATTTGCAATATTGTTGCGTGTGAAGGTCGTTATAGAATAGAGAGACACGAAACCCTTTCTCACTGGAGGGTACGCTTGGGCAGAGCAGGTTTCAGGCCATCACATTTAGGCTCCAACGCATTTAAACAGGCAAGGATGCTCTTGACCTTGTTTTCTGGAGAAGGTTACACTGTTGAGGAGAATAACGGTTCCCTAACACTGGGCTGGCACAGCCGGCCCCTCATAGCTGCATCTGCATGGCAAGGCTCCTAG___GGCTTAGGGTTCAGTTATTTGTATCATTTCTTAGCATCTTGCAGGCTCAGTAACTGTATAAGAGGAGAATAAATCTCAAAGCTTCCAAGTTTTTAAGACAGTTAAATACTCCTATCCTGTGGTGTCTGGATAAACATACCAGAATTAATGAATGCTTCACAACAATGTGATATGTCTCTGTCTGGATGAACACATTAGAGTTCAGGATGAAATGCTGGCTCGTAAGATAAATGCTGCCAGACTGATTCAAAATGGGCATGGCTAGGCTAAGCTAAGCACTGATGGAAAGAGTCAATCATCTGATGTAAAAACAATGAGTCAATCATTTACTTATTGTATGGTGCTTAACATGGGCAAAAACTCATGACTACACCTCTCTCTTTTTCTGAATGTATTTTCTTCTCCTTCCACTGTCTTCTCCGCCCTTTTTTTCACAAAAGTTGCAAATCCCCTTGTTGAAAATGTAATCTTAGCAATTCAGCAATGATATTTACGTGTTTATGAGGTTTTGGAATCTAGCCAGAATGTACAAAACTCAATTCCAGCTACAGAGATTGCTCAGAAATCAAAAAGTTTTTCTTTGGCAGAGTAGCATAGAGCACAAATTGCATTTAATTTGCTGTTGGCTTTGGCCAGTGCAGCAACAGCAGAGTCAGCAGGTATAGGCAGGGAGTTATAACTGCCCTAACTAAAGCAGTTATCATATATTTAGAGTATAGGAGATTTGATAGTCTCAAAAGCTATTTTAAGCATTTCCCTTTGTAATATTATTCCTTTTACCTTTGTTTCATTAATGTTTAAATATTATGCAAAAAGCTTTGAATGCA

Fln Alignment:

Contig6469___IDGLLANAGYTVKASDLAHVAQRLEQLESIMGTVQDPGISHLASEAVHYNPSDLAGWIESMFGELNPGADMPV--PFGDRGSLIDSSQFHKPIQDDPSLSAMDLALIQEYGLQFNGNQASNPQGFSPDSNPSIRCNIFSGLPLRSGDSTRHMNFQARSFSAQSSDEGSSLSSTRLGTAQQSIDNGAQESGIRVVHLLMGCAEAIQRNNLKVASDLVREIRMTVNSAPCGAMGKVASHFVEALARRICGLNGAESNMSQADAQSEILYHHFYEVCPYLKFAHFTANQAILEAFEGHGSVHVIDLNLMHGLQWPALIQALALRPGGPPFLRLTAIGPRQPDGRDVLQEIGMKLAQFAESVNVEFDFRGVMADKLEDIKPWMFQVKPGEVVAVNSVLQLHRLLYIDAPTGSSPIDVVLKSIGSLRPKIVTVVEHEANHNGPVFLDRFVEALHYYSTMFDSLEACNVLP-NSMEKLLAELYIQKEICNIVACEGRYRIERHETLSHWRVRLGRAGFRPSHLGSNAFKQARMLLTLFS-GEGYTVEENNGSLTLGWHSRPLIAASAWQ
Q8S4W7______________MDELLAVLGYNVKASDMAEVAQKLEQLEEVIVNAQEDGLSHLASETVHYNPSDLSNWLGSMLSEFNPTPNCALDNPFLPPISPLDYTNCSTQPKQEPSI--FDSPSL-DYDLKAIPGKALYSHIEQPPQQPPAP-------PLYQRDNKRLKPTTSATANSVSSVIGGWGVPTESARPVVLVDS--QETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQ-AGAMRKVATYFAEGLARRIYRLYPDKPLDSSF---SDILQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLL--ARPGG---IERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
727		25		75	0.996473
808	20	80			0.995493
811			20	80	0.995493
901			88	11	0.923564
903		88		11	0.923564
948	12		87		0.992554
961		14	85		0.993533
991	28			71	1.0
1140		83	16		0.994512
1142		16	83		0.994512
1146			83	16	0.994512
1147		83	16		0.994512
1183		50		50	1.0
1192		75		25	0.996473
1232	20		80		0.995493
1240	16		83		0.994512
1303		50		50	1.0
1354	55		44		1.0
1365	11			88	0.923564
1367			88	11	0.923564
1375		12	87		0.992554
1377		87		12	0.992554
1387		85		14	0.993533
1414		71		28	1.0
1656	12		87		0.992554
1657		12		87	0.992554
1678		85		14	0.993533
1686		83		16	0.994512
1728	88			11	0.999937
1729	88	11			0.999937
1730	11		88		0.999937
1731		11	88		0.999937
1733		11		88	0.999937
1877	89		10		1.0
1913	2			91	0.993509
2324	15		84		0.999986
2328	60			40	1.0
2329	50			50	1.0
2330	50		50		1.0
2331	50		50		1.0
2332	75			25	0.996473
2334	33			66	0.997452
2335	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain