SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6454

Length: 1322 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6454

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative zinc transporter n=1 Tax=Solanum lycopersicum RepID=A1YIQ6_SOLLC	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc/iron permease	IPR003689	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55910.1	ZIP11 zinc transporter 11 precursor chr1:20906161-20907225 FORWARD LENGTH=326	48%
RefSeq	Arabidopsis thaliana	NP_564703.1	zinc transporter 11 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002300374.1	ZIP transporter [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSI1

Fln msg:

Fln protein: MSLETQRHGRVDCKCRWVLLAVGILANCLLTCPGFVHSAAAGSDHEDGVKKSDLRDKGLILVKIWCLVIVFAVTFAGGISPYFWRWNQSFLEVGTQFAGGVFLGTALMHFLSDSNQAFQDLGLKEYPMAFLLCSLGYALTMMGDFVLLWVNHRSSVGSECGDGKASEEGGGGGQGRRQGRKAWAGESALLILALCFHSVFEGMAVGVAESKGGAWRALWTVCLHKVFAATAMAIALLRTKPNRALLSCVAYASAFAISSPVGVSIGIVVDSTTEGPVARWLFAITMGLATGIFIYVALNHMLRGAHAHAQAQGPRSNSCRAREEDDDNGDDGRGPSLYNFLAFLLGVGVIAVAMIWDT*

Protein Length: 360

Fln nts: ATGGGATTCCTAGTGAGGCATTG_-_ATGTCTTTGGAGACACAGAGACATGGGAGAGTAGACTGTAAATGCCGATGGGTGTTACTTGCAGTCGGGATACTGGCCAACTGCTTGCTTACTTGCCCTGGTTTTGTTCATTCTGCAGCAGCAGGCAGTGATCATGAAGATGGAGTGAAGAAGAGTGATCTGAGAGACAAGGGTTTAATCCTGGTGAAAATATGGTGTCTGGTTATTGTGTTTGCAGTGACTTTTGCAGGGGGGATTTCTCCCTATTTCTGGAGGTGGAACCAGAGCTTTCTTGAAGTGGGCACTCAGTTTGCAGGGGGTGTGTTCTTGGGCACCGCTCTAATGCACTTCCTCAGTGATTCCAATCAGGCGTTTCAAGATTTGGGGCTGAAAGAGTACCCCATGGCATTCTTGCTGTGCAGCCTGGGCTATGCCTTGACAATGATGGGAGATTTTGTTCTTCTGTGGGTCAATCACAGGAGCAGCGTGGGGAGTGAGTGCGGTGATGGAAAGGCGTCGGAGGAAGGCGGCGGTGGCGGCCAGGGAAGGAGGCAGGGGAGGAAGGCGTGGGCTGGAGAGAGTGCGTTGCTCATATTGGCGCTCTGTTTCCACTCGGTCTTCGAGGGAATGGCGGTGGGCGTTGCTGAGAGCAAGGGGGGTGCTTGGAGAGCCCTGTGGACTGTGTGTCTGCACAAGGTGTTTGCGGCCACGGCCATGGCAATTGCCCTGCTCAGGACAAAGCCCAACAGGGCATTGCTCTCTTGCGTGGCCTATGCTTCTGCGTTCGCCATATCGAGCCCCGTGGGTGTGAGCATCGGCATTGTTGTGGATTCGACCACGGAGGGCCCTGTGGCTCGCTGGTTGTTCGCCATTACCATGGGTTTGGCCACAGGGATCTTCATCTATGTTGCCCTGAACCATATGCTCCGAGGCGCCCACGCTCACGCTCAGGCTCAGGGTCCCCGGAGCAACAGTTGCAGAGCACGTGAAGAAGATGATGACAACGGTGATGATGGACGTGGTCCCTCCCTGTACAACTTCCTGGCTTTCTTGTTGGGAGTGGGAGTCATTGCGGTGGCCATGATTTGGGATACTTGA___TTCGATCTGATAATGATTGAAAATACTTTTCTGGTTGTAAATTTGAGGGATGCAGTAAAATATAAAAGAGAATAATGACAAAGTTGGTATATCTTTGTCGATTGTATGAATCATGTGTGGTTAGGTTTTTTCCACTAGTGTTTTTTAAACATGTTATTTACTAAATGCTTATTTTCATATATATATATATATTATTGAGATTGTGCTGGTCTCCATTAACAC

Fln Alignment:

Contig6454___GRVDCKCRWVLLAVGILANCLLTCPGFVHSAAAGSDHEDGVKKSDLRDKGLILVKIWCLVIVFAVTFAGGISPYFWRWNQSFLEVGTQFAGGVFLGTALMHFLSDSNQAFQDLGLKEYPMAFLLCSLGYALTMMGDFVLLWVNHRSSVGSECGDGK-ASEEXXXXXXXXXXXXK-----AWAGESALLILALCFHSVFEGMAVGVAESKGGAWRALWTVCLHKVFAATAMAIALLRTKPNRALLSCVAYASAFAXXXXXXXXXXXXXXXTTEGPVARWLFAITMGLATGIFIYVALNHMLRGAHAHAQAQGPRSNSCRAXXXXXXXXXXXXXPSLYNFLAFLLGVGVIAVAMIWDT
A9NSI1______________GTVDCKCQWALLAVGILANCLLTCPGFVQ-AAPGSGHDDEAKKSDLRDKGLILVKIWCLVIVFAVTFTGGISPYFWRWNQSFLVVGTQFAGGVFLGTALMHFLSDSNQAFQDLGLKDYPMAFMLCSLGYVLTMLGDCVLLWVNQRNNVGNECGKGKEAAEEGDGSGGRSSGGGSRRRRAAATGESTLLILALCFHSVFEGMAVGVAESKGGAWRALWTVCLHKVFAATAMAIALLRMKPNRPFLSCVAYAFAFGISSPVGVSIGIIVDSTTEGPVARWLFAITMGLATGIFIYVALNHMLRGAH----AQAPRNNSGTTREEDDDDGDDRHGPSLYNFLAFLLGVGVIAVAMIWDT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
826			33	66	0.997452
945	40		60		1.0
1022	66		33		1.0
1055		50	50		1.0
1156		70		30	1.0
1205	12			87	0.992554
1216	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1277	1292	AT AT AT AT AT AT AT AT	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain