SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6440

Length: 2230 nt

UniGene Fasta

>sp_v3.0_unigene6440
GAAGGAGGCTGGAAACTTAGTGGGTTCTGCAACATTTATGTCCAGTGGGAGGCATCATTGCCAGAGACATAAAAGAAAAGAGGTCGGGCCACGGTCATGCCTAGGGAAGTGAGAAAGAAAAGATCCCAGTTGCTGGTTTGAAGGGAAAACGTAAGGGAATTGAATTGAATTTTCTATTGAATTCTCTGGCACTGGGATTTGGCCTTTTTAATCCCAGGCATGGGCACATGGTCATGCCCAAATTTAAAAGATATATAGGTGTATTTTAAGAGCTTCTATGCCTGTGCCCTTCTGTGAGCTTCTGACATGAAGAATACATTGGAGGAAGAGCTCTGGTAATGATGGAGGTGTGAAAATTGAGCATGGAGGCCTTGCAGTGCAAACCGTTAGGAATAGGATTAGGAATAGGAATAAGATCATTTGGAAGAGGACAAAACCGATGGATTACTGGCTTCGGTTCTCATCAATCGCCAGCCATGGAGTCGCTCCCACAGATGCCAAGATCGTCGGTGACATTCCATACCTTTGTCCCTTGTTCTTGGATGAGAATTTCTGTTCTCATCTGCCTTGTTTGCTTCCTCCTGCTTCTTCCTCTGCCTCCGGCTGCTGGTGCTCTGGAGGAGGAGCCATTGATGCCCAATTTCAATGTTACAGAGATTAAATTGAAGAGAATAGCAAAGCATCTCAAGAGATTGAACAAGCCGGCCTTAAAGACTATACAGAGTTCAGATGGAGATACTATCGATTGCGTGCTCGCTCATCAACAGCCTGCATTCGATCACCCTCGTTTGAAAGGACTCTTGCCTCGGGAACCGCCCGTGAGACGGCCGAAGGGCTATAAAATCGGATCTTCATTGAAGAATTTCCAGCCATGGCATCGACACGGGAAGTGTCCGAAGGGGACTGTTCCCATTCGCCGTACCAAAAAAGAAGATATCATGAGATTTGGATCTGTGAAAAGATTTGGCCGTAAGCCCCATCGTCAGCCTACTCCCTGGAATCCTACGAAGCACTACACAGAAGAAAGTAGCACCCATGAACATTCAGTAGGATTCGTGTCGGGGGACCAGTACTATGGTGCAAAAGCCAGTCTGAATGTATGGACGCCTCATATACAGAAGCCTTCTGAGTTCAGTCTGTCACAGATGTGGGTCATCTCTGGTACCTTTGACAATGATCTTAACACAATTGAAGCTGGGTGGCAAGTCAGCCCGGAGCTCTATGGAGATTCATATCCCCGGTTTTTCACTTATTGGACGACTGATGCTTATCAGGCTACTGGTTGCTATAACCTGTTATGCTCAGGATTTGTGCAAACAAATAATGAGATCGCTATTGGAGCTGCCATATCACCAACTTCACAATATAATGGTGGCCAGTTTGATATCAGCTTGCTTGTTTGGAAGGATCCAAATCATGGGAACTGGTGGCTGGAATTTGGAGATGGACAATTAGTAGGATACTGGCCTGCGTTTCTCTTCAGCCATCTAGCAGATCATGCGACCATGGTTCAGTGGGGAGGGGAGATTGTGAACACGATGCCCGAGGGCATGCACACCAGCACACAGATGGGCAGTGGGCATTTTGCAGAAGAAGGATTCTCCAGAGCCAGTTATTTCAGGAATATTCAGGTGGTAGATTGGGACAACAGCTTGATACCTCTAGCCAATCTACAGCTTTTATCAAATCATCCAGAGTGCTATGACATTCAAGGAGGGCAAAGTAGCAAGTGGGGAAACTACTTCTACTATGGTGGGCCAGGCCGAAATCCAAGATGTCCATAAGGCTGCCTTCACACACAATTATTATACACAGATCTACACATATTTTTCTCTTTTTGATTTCAGGGATTCATGTCTAATGAATTCTAGCTGGGTATACATTCTTTTTCTCCACCACTGTGTGTCAGATTGACCATAGATCATCTCTGTGTTGTTTCCCGACGAGCAGTGATTCAGATATACTTGCTTTTGTCTTCTTACAGAGCTGCTGTTTTTTTGTCCAGTACATAATGTGGGTATGGTAGAACGACTGGAGTGATTATAATACACACTGTATGTTTCATTTTGTGGGCTTCAAGTCCCAAGCCCTTCCTGTAACGTTTATTCATGTCAAACGCCTAATAAGTCCAGTAAGGATATTATAAAAGAGAGAACATTATGCAGTGTGATTATCACAAATTACTCTGCAACTGTATTCGCTTCTGCTGTGTCAAAATACGTTCTCTTTC

Ace file of the UniGene sp_v3.0_unigene6440

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative carboxyl-terminal proteinase n=1 Tax=Gossypium hirsutum RepID=Q93X76_GOSHI	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Carboxyl-terminal proteinase	-	-	7.672e-16	-

Source	Gene names
Sma3	AT2G44210; AT5G50150; At1g10750; At1g23340; At1g23340/F26F24_11; At1g55360; At1g70550; At2g17750; At2g44210; At2g44220; At2g44220/F4I1.3; At2g44240; At2g44250; At3g13510; At3g48230; At3g48230/T24C20_110; At5g18460; At5g19170; At5g25950; At5g25960; At5g501

Source	GOs	Term	Type	e value	Identity
Sma3	response to oxidative stress	GO:0006979	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF239	IPR004314	-	0.0	-
Sma3	MULE transposase domain	IPR018289	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10750.1	Protein of Unknown Function (DUF239) chr1:3574986-3578310 REVERSE LENGTH=467	68%
RefSeq	Arabidopsis thaliana	NP_172545.1	uncharacterized protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002312681.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A842

Fln msg: your sequence is longer than subject: 474 - 399

Fln protein: MEALQCKPLGIGLGIGIRSFGRGQNRWITGFGSHQSPAMESLPQMPRSSVTFHTFVPCSWMRISVLICLVCFLLLLPLPPAAGALEEEPLMPNFNVTEIKLKRIAKHLKRLNKPALKTIQSSDGDTIDCVLAHQQPAFDHPRLKGLLPREPPVRRPKGYKIGSSLKNFQPWHRHGKCPKGTVPIRRTKKEDIMRFGSVKRFGRKPHRQPTPWNPTKHYTEESSTHEHSVGFVSGDQYYGAKASLNVWTPHIQKPSEFSLSQMWVISGTFDNDLNTIEAGWQVSPELYGDSYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNEIAIGAAISPTSQYNGGQFDISLLVWKDPNHGNWWLEFGDGQLVGYWPAFLFSHLADHATMVQWGGEIVNTMPEGMHTSTQMGSGHFAEEGFSRASYFRNIQVVDWDNSLIPLANLQLLSNHPECYDIQGGQSSKWGNYFYYGGPGRNPRCP*

Protein Length: 475

Fln nts: GAAGGAGGCTGGAAACTTAGTGGGTTCTGCAACATTTATGTCCAGTGGGAGGCATCATTGCCAGAGACATAAAAGAAAAGAGGTCGGGCCACGGTCATGCCTAGGGAAGTGAGAAAGAAAAGATCCCAGTTGCTGGTTTGAAGGGAAAACGTAAGGGAATTGAATTGAATTTTCTATTGAATTCTCTGGCACTGGGATTTGGCCTTTTTAATCCCAGGCATGGGCACATGGTCATGCCCAAATTTAAAAGATATATAGGTGTATTTTAAGAGCTTCTATGCCTGTGCCCTTCTGTGAGCTTCTGACATGAAGAATACATTGGAGGAAGAGCTCTGGTAATGATGGAGGTGTGAAAATTGAGC_-_ATGGAGGCCTTGCAGTGCAAACCGTTAGGAATAGGATTAGGAATAGGAATAAGATCATTTGGAAGAGGACAAAACCGATGGATTACTGGCTTCGGTTCTCATCAATCGCCAGCCATGGAGTCGCTCCCACAGATGCCAAGATCGTCGGTGACATTCCATACCTTTGTCCCTTGTTCTTGGATGAGAATTTCTGTTCTCATCTGCCTTGTTTGCTTCCTCCTGCTTCTTCCTCTGCCTCCGGCTGCTGGTGCTCTGGAGGAGGAGCCATTGATGCCCAATTTCAATGTTACAGAGATTAAATTGAAGAGAATAGCAAAGCATCTCAAGAGATTGAACAAGCCGGCCTTAAAGACTATACAGAGTTCAGATGGAGATACTATCGATTGCGTGCTCGCTCATCAACAGCCTGCATTCGATCACCCTCGTTTGAAAGGACTCTTGCCTCGGGAACCGCCCGTGAGACGGCCGAAGGGCTATAAAATCGGATCTTCATTGAAGAATTTCCAGCCATGGCATCGACACGGGAAGTGTCCGAAGGGGACTGTTCCCATTCGCCGTACCAAAAAAGAAGATATCATGAGATTTGGATCTGTGAAAAGATTTGGCCGTAAGCCCCATCGTCAGCCTACTCCCTGGAATCCTACGAAGCACTACACAGAAGAAAGTAGCACCCATGAACATTCAGTAGGATTCGTGTCGGGGGACCAGTACTATGGTGCAAAAGCCAGTCTGAATGTATGGACGCCTCATATACAGAAGCCTTCTGAGTTCAGTCTGTCACAGATGTGGGTCATCTCTGGTACCTTTGACAATGATCTTAACACAATTGAAGCTGGGTGGCAAGTCAGCCCGGAGCTCTATGGAGATTCATATCCCCGGTTTTTCACTTATTGGACGACTGATGCTTATCAGGCTACTGGTTGCTATAACCTGTTATGCTCAGGATTTGTGCAAACAAATAATGAGATCGCTATTGGAGCTGCCATATCACCAACTTCACAATATAATGGTGGCCAGTTTGATATCAGCTTGCTTGTTTGGAAGGATCCAAATCATGGGAACTGGTGGCTGGAATTTGGAGATGGACAATTAGTAGGATACTGGCCTGCGTTTCTCTTCAGCCATCTAGCAGATCATGCGACCATGGTTCAGTGGGGAGGGGAGATTGTGAACACGATGCCCGAGGGCATGCACACCAGCACACAGATGGGCAGTGGGCATTTTGCAGAAGAAGGATTCTCCAGAGCCAGTTATTTCAGGAATATTCAGGTGGTAGATTGGGACAACAGCTTGATACCTCTAGCCAATCTACAGCTTTTATCAAATCATCCAGAGTGCTATGACATTCAAGGAGGGCAAAGTAGCAAGTGGGGAAACTACTTCTACTATGGTGGGCCAGGCCGAAATCCAAGATGTCCATAA___GGCTGCCTTCACACACAATTATTATACACAGATCTACACATATTTTTCTCTTTTTGATTTCAGGGATTCATGTCTAATGAATTCTAGCTGGGTATACATTCTTTTTCTCCACCACTGTGTGTCAGATTGACCATAGATCATCTCTGTGTTGTTTCCCGACGAGCAGTGATTCAGATATACTTGCTTTTGTCTTCTTACAGAGCTGCTGTTTTTTTGTCCAGTACATAATGTGGGTATGGTAGAACGACTGGAGTGATTATAATACACACTGTATGTTTCATTTTGTGGGCTTCAAGTCCCAAGCCCTTCCTGTAACGTTTATTCATGTCAAACGCCTAATAAGTCCAGTAAGGATATTATAAAAGAGAGAACATTATGCAGTGTGATTATCACAAATTACTCTGCAACTGTATTCGCTTCTGCTGTGTCAAAATACGTTCTCTTTC

Fln Alignment:

Contig6440___TEIKLKRIAKHLKRLNKPALKTIQSSDGDTIDCVLAHQQPAFDHPRLKGL----LPREPPVRRPKGYKIGS-SLKNFQPWHRHGKCPKGTVPIRRTKKEDIMRFGSVKRFGRKPHRQPTPWNPTKHYTEESST----HEHSVGFVSGDQYYGAKASLNVWTPHIQKPSEFSLSQMWVISGTFD-NDLNTIEAGWQVSPELYGDSYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNEIAIGAAISPTSQYNGGQFDISLLVWKDPNHGNWWLEFGDGQLVGYWPAFLFSHLADHATMVQWGGEIVNTMPEGMHTSTQMGSGHFAEEGFSRASYFRNIQVVDWDNSLIPLANLQLLSNHPECYDIQGGQSSKWGNYFYY
D5A842______________TSGKLCRIHEHLRRINKPAVKSIQSSDGDIIDCIHRHKQPAFNHPLLKKHKIQDLPERPSKFRPAPVNRTSFSVHAAQTWHLAGFCPEGTIPVRRTFAEDLMRADSPKRYGRKSHR-------AARFDQKPDVNGFGHEHAIAYVQGEEYYGAKATINVWAPRIETLNEFSLSQLWVLSGSFDGSDLNSIEAGWQVSPELYGDTRPRLFTYWTSDSYQETGCYNLLCSGFVQTNNKIAIGASISPVSEFADTQYDITILIWKDPKEGNWWMEFADRTLVGYWPSELFTHLADHANMIEWGGEIVNTEAGGEHTSTQMGSGHFAEEGFGKASYFRNLEIVDSDNSLRGVSSMLTLAEHTYCYNIQNRYNIEWSNHFYF

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
794	75		25		0.996473
926	87			12	0.992554
1000	85		14		0.993533
1055		66		33	1.0
1082	50			50	1.0
1537		87		12	0.992554
1685	81		18		0.999994
1688		18		81	0.999994
1790		88		11	0.923564
1792			11	88	0.923564
1794		88	11		0.923564
1799	88			11	0.923564
1800		90		10	0.90298
1801	80		20		0.999996
1803		10		90	0.90298
1804		10		90	0.90298
1805	80		20		0.999996
1809		20		80	0.999996
1812	90			10	0.90298
1814	90		10		0.90298
1816	90	10			0.90298
1818		90	10		0.90298
1824	88			11	0.923564
1825		14		85	0.993533
1963	75		25		0.996473
2021	10			90	0.90298
2027	88		11		0.923564
2029		88	11		0.923564
2031	88		11		0.923564
2046	88	11			0.923564
2052	87			12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
157	171	GAATT GAATT GAATT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain