SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6434

Length: 1486 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6434

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SU60_VITVI	-	-	0.0	55%
FL-Next	sp=DNA topoisomerase; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	53%

Source	Gene names
Sma3	AT4g31210; At4g31210; GSVIVT00032380001; GSVIVT00032381001; OSJNBa0063H02.18; OSTLU_41359; Os06g0281400; OsI_07185; OsI_22537; OsI_22539; OsJ_06712; OsJ_20977; P0456E06.44; PHYPADRAFT_137401; POPTRDRAFT_745360; RCOM_0205460; VITISV_001620; VITISV_020021;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	DNA topoisomerase activity	GO:0003916	Molecular Function	-
Sma3	DNA topoisomerase type I activity	GO:0003917	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-
Sma3	DNA unwinding involved in replication	GO:0006268	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IA	IPR000380	-	-
Sma3	DNA topoisomerase, type IA, domain 2	IPR003601	-	-
Sma3	DNA topoisomerase, type IA, DNA-binding	IPR003602	-	-
Sma3	DNA topoisomerase I, bacterial-type	IPR005733	-	-
Sma3		IPR006154	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	DNA topoisomerase, type IA, central	IPR013497	-	-
Sma3	DNA topoisomerase, type IA, zn finger	IPR013498	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 1	IPR013824	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 3	IPR013826	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31210.1	DNA topoisomerase, type IA, core chr4:15165280-15172534 FORWARD LENGTH=1284	51%
RefSeq	Arabidopsis thaliana	NP_194849.3	DNA topoisomerase, type IA, core [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002330833.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: I1GZ20

Fln msg: your sequence is shorter than subject: 320 - 877

Fln protein: GIGRPSTYAPILKTLEGREYVTIRSRRIFPEFRGRMVSAFLSHYFPEIVDYGFTAYLESQLDNISAGRAKWKNMLNKFWESFNRDCGRVIKIDVHQVENMLGQTFGDHLFAALPGESRMCPACEGGTLSFKVSRHGAGYFIGCDKYPKCSYIARTIFTEEDGGENLSPVDTKKFPPPKILGIDPNSNQEIFLKHGPYGCYVQLGVDQKGFRPKRANVSQIKDISSFTLEDALDMLRYPVILGEHPNDKEPVELRRTKTGFSVRHHMFIAAVPKNVDHQTVTLDIAVQMLEGADAKKVGRPSAVKSKRRQRKPKLLNSTL*

Protein Length: 321

Fln nts: GGCATTGGCAGACCCTCTACTTATGCACCTATATTGAAAACACTGGAGGGACGGGAATATGTCACCATTAGGAGTCGGCGAATATTTCCTGAGTTCCGTGGTCGAATGGTCTCTGCATTCCTCTCCCACTACTTTCCAGAAATCGTAGACTATGGTTTCACAGCTTACTTGGAGAGTCAGTTGGATAATATTTCTGCTGGGCGTGCTAAATGGAAAAACATGTTGAACAAGTTTTGGGAAAGTTTTAATCGTGATTGCGGAAGAGTCATCAAAATTGATGTTCATCAGGTAGAAAACATGCTGGGGCAGACTTTTGGAGATCATCTATTTGCGGCACTTCCTGGGGAAAGCAGAATGTGTCCCGCGTGTGAGGGTGGGACGCTGAGCTTCAAAGTAAGTCGTCACGGTGCTGGGTATTTTATTGGCTGTGATAAATATCCCAAATGCTCGTACATTGCAAGAACAATATTCACTGAAGAGGACGGAGGAGAAAATTTGAGTCCGGTTGACACAAAGAAGTTCCCCCCACCAAAGATACTTGGCATTGATCCCAATTCTAATCAGGAGATTTTTCTGAAGCATGGTCCATATGGGTGTTACGTCCAGCTAGGGGTTGATCAAAAAGGGTTCAGGCCAAAGCGTGCAAATGTTTCCCAGATCAAAGATATCAGTTCCTTTACACTGGAGGATGCACTTGATATGCTGAGATACCCAGTCATCCTGGGTGAGCATCCAAATGACAAGGAACCTGTTGAATTGAGGAGAACAAAGACCGGATTTTCTGTTAGGCATCACATGTTTATAGCTGCGGTACCTAAGAATGTAGATCATCAGACAGTCACTCTAGATATAGCTGTTCAAATGCTGGAAGGTGCAGATGCAAAGAAGGTAGGTCGACCATCTGCTGTAAAGTCAAAACGGAGACAAAGGAAACCCAAATTATTAAATTCAACACTGTAG___TTTATCATTTAGACAAATCAACTTGTAATCTTAGCCTTAATTAATGAGTGCAAGGTAACAAGTTTGTATTCAACCTTGTATCAAATCCACTTGTATAGAATGATTCAGGGTTTCATTATTCCAATCTTCTGTTTTCATGTGAGCAATAAGATACGATAATTTTGTTAATTTCCAACAAATCTATTTATTAATGTCCAATCAAATTTATTTTCCCTTTTGACTATTGATCTGATAGATGGATGGATATATATGGGGTCACTCCCATCGACTCATAGGTCCTAAAAGACACAAATGCAAACTTCAATTCATTATTGAGAAATACATGCCAGTGTTAGATATTGACCTGCATGCAGGAAACATGAGCATTGGTTGTTTCTGCCCAGGTCCTCCAATGTGAGAATTATAGCCTGCATGCAATGGATTTATTTAATCTAAAAATCCCTTTGATCTTAATTAATGTATTTTTCTGTAAGAGATATAGAGCACACTGATACATTATGTCTCTTCACTCTCTGACACTTGTTCC

Fln Alignment:

Contig6434___GIGRPSTYAPILKTLEGREYVTIRSRRIFPEFRGRMVSAFLSHYFPEIVDYGFTAYLESQLDNISAGRAKWKNMLNKFWESFNRDCGRVIKIDVHQVENMLGQTFGDHLFAALPGESRMCPACEGGTLSFKVSRHGAGYFIGCDKYPKCSYIARTIFTEEDGGENLSPVDTKKFPPPKILGIDPNSNQEIFLKHGPYGCYVQLGVDQKGFRPKRANVSQIKDISSFTLEDALDMLRYPVILGEHPNDKEPVELRRTKTGFSVRHHMFIAAVPKNVDHQTVTLDIAVQMLEGADAKKVGRPSAVKSKRRQ
I1GZ20______________GIGRPSTYASIMRVLQDRKYVTIKSRVLHPEFRGRMVSAFLSHHFSEIADYSFTANMETELDNVSAGSTEWKGLLKDYWERFSKYCGDASQWDVRKVERMLEEKFRPILFPDLDDASRICPSCSEGTLRFKVSRFGEGYFIGCDRHPKCKYIARTLSDEDD--ENEACEETKWNFEPRLLGVMPNLNEKVFLKQGPYGYYIQVGEDRKGISQKRASLSEVKNVDSITLEDAIELLQYPKILGKHPDDEYPVLMTHSKAGFSVRHRRTVAPLPKNTDLKKITLECALKLLAGKNVKKFGRPLGKQNKSKE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
617		25		75	0.996473
618			75	25	0.996473
620		25		75	0.996473
622	75		25		0.996473
623	75			25	0.996473
915		11		88	0.923564
1131		9		90	0.999842
1132			9	90	0.999842
1135		90		9	0.999842
1136	90		9		0.999842
1139	90	9			0.999842
1140	90			9	0.999842
1141	90			9	0.999842
1142			9	90	0.999842
1143		90	9		0.999842
1145	90		9		0.999842
1147		9		90	0.999842
1148	9			90	0.999842
1149	90	9			0.999842
1151		9		90	0.999842
1201		14	85		0.993533
1202	85		14		0.993533
1204		14	85		0.993533
1206	71		14	14	0.984337
1207			14	85	0.993533
1209		14		85	0.993533
1210	85	14			0.993533
1216			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain