SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6433

Length: 2700 nt

UniGene Fasta

>sp_v3.0_unigene6433
ATGGGGGAGAAGCGCGGGTGGGAATTAGGATAGTAGATTTATAATGGTGGTCACGCCAGTTCCTGCAGCAGCAAGCAAGCACACAATGATGGCATTTATGGTTTCCAGCTGCCTTTAGCATCATCTGCTACTGAAACTTCCATGAATGTTCAAAATAGTTTGAAAATTCACGAGATTTGTGTTCACTATAGGCAGTATGTAAGGGATTTCAGATTGGACTTTGTCCAGAAAACGGTATTGGGGCATGGAGTGGAGTAGTTGGAGAATTTTGGGTGTTGAAGGAGTCTAGAGGTATTCATAGAACTGTGGGCGTTAATTTTGGAGGATAGAAATTTTCAGAGAATCGTGGCTGTTCATCTGTATTGACTATTTCGAAAGAAGAATGAAGATGGAATAGCAGTGGAATTTCTCCAAGATATTTTTTATGATGTTTGTGTGTATGTTTCCCAGGGCAGAGTCGACTGAATGTTTGCTGTTATTGAGTGTGATTCAAGCCTAGTTGCCTACTTGCATACTTTTCAAAGATTTGTACTCTGTTTTGATAATATGAGCAGCTATTTCAAATGCAAGGCCTGCTTTATTTGGATATTTGAGCAGTGGTCACTCTCCCAAACTGGGTATATTATACATAGCCAAGACAAGAAAGAGGAGTAGATCAGGAACGAGAAATAGGTCTCTGGTTAGGTTCCTGGCAACATAGCCAGCATTTGTAAAGGAGAGAGCGTGGTGACCTTGGCTGTGACTCATCTTTTCAGCACATAGATGAGTTTATTAGCAAGTTGCCAATCATGGAGCATGGGAATTTGCATCTACTATGGTTGATTGTGGCAACTGTGTGCATATTTCTCCAGATTGGAGCGAGTGCGATCGAGAATCCAGAAGTGTCTGCTCTCCAGGCTATTCAAAGAGTTTATCGTTTAAACTTAGGCTGGGAAAATGATCCATGTTCTCCAGTTCCATGGAAGGGTCTTCAATGTGATGAAGCAAACGACGTTGTCTCTTTGGACCTCTCAAACATGAATCTACAGGGACCAATATCTGTTGCATTCGGGGACCTTCTAGATCTTCAAAACCTGGATTTGCATAATAACTCACTAACTGGACAAATTGAGAACTTTAATGCTCTCTCTCTACTTCAAACACTGAATCTGAGCTTCAACAAACTAAATGCACGCATACCTGACCTAAGTTCCTTAACTAGCTTGCAGAAACTGGATTTGCAAAACAACAGTCTTCAGGGGACAGTTCCGGAGAGCCTGGGAAGATTGCCAAGTCTTGACTTATTAAATTTGGAAAACAATCAACTTTATGGGAACCTGCCCATCTCCCTGAACAAGACTACACTGGATTTAAGAACATCGGGCAATCTATGTCTGACATTCCCTGGTACAAGATGTTCTCCTGCCCCTCCTCCACTTCAGACCCCGGAAGTGACAGAACCGAACATATCCAAAAGAAAAGCCACATCAAGGCTATTATTGGAGGCCTTGTAGGTGGAATAGCATTTGTTGTAATCGTGTGTTCAGCTCTACTAATATGGTACAAAAGAAAACACAAACAGGAGGATGGAAGGTCCATGTCAAAAACAGACATGAGAAATTGGAATGCAGCAAGACGGTTTACCTTCAAGGAAATTAAACTGGCAACAAATAGTTTTAAGGAGACAATAGGCCGTGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCAAGAGGGAAACCGTGTTGCTGTGAAAGTACGCTTTGATCCATCACAACTAGCAGCTGACTCTTTTATTAATGAGGTATTCTTGCTCTCCCAAGTTCACCATCAAAACCTTGTTACATTGGAAGGATTTTGTCAAGAGCCTAAGCATCAAATTTTGGTATATGAATATTTGCCCGAAGGAGCTCTGACAGATCATCTTTATGGTGCTAAAGGCAAAAGGAACCCATTGGACTGGAAGAAACGATTAAAAATTGCCGTGGACGCTGCAGCAGGAATCGAGTATCTTCACAATGGAAGTAATACCAAGATCATCCACCGTGATGTAAAGTGCAGCAACATTCTTCTGGATTCAGCCATGAATGCCAAAGTTTGTGACTTCGGCCTTTCTAAGCAAATTGTTCAAGCAGATGCAACTCATGTGACAACAGTTGTCAAGGGAACTGCCGGGTATCTTGACCCTGAGTATTATTCAACACAACAGCTGACTGAAAAAAGCGATGTCTATAGTTTTGGGGTGGTGCTTCTAGAGTTGATATGTGGACGTGAACCTTTGACTCACACAGGTTCCCCAGATACCTATAATCTGGTCTTATGGGCGAAGCCCTACCTACAGGCTGGAGACTACAATGTTGTAGACAAGAACCTTCAGAACAAGTACAGCACAGAAAGCTTAAAGAGAGTTGCTTCCATTGCCTCGAGGTGTGTGGAGAGAGATGCTTCACAGAGGCCAACTATGGCAGAAGTCCTGTCCGAGCTCAAGGAAGCCTTGGCTATTGAAGAAACTGAAAATCCAACGACTGAAGAGATCTGAGCAATGACTATTCATACTAGAAATGGCCCGCCACAACTTACATTATTTTCTCAGTTTTCACCACATCATGGCATGGCAATCTTTATTTTCTTTCTTCCATTTTTCTATTGCAAAGAAACTAATTAAGTTATATGGCCATCTTCTGAGATGCCCGTAAAATATGTTCTTAGGGTGATAGCCTA

Ace file of the UniGene sp_v3.0_unigene6433

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGV0.1\|Y5487_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At5g48740; Flags: Precursor gb\|ACN59385.1\| leucine-rich repeat receptor-like	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Symbiosis receptor-like kinase	-	-	2.913e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	6.365e-06	-

Source	Gene names
Sma3	AT1G07560; AT1G67720; AT2G28960; AT2G28970; AT2G37050; AT3G21340; AT5G16900; AT5G48740; AT5G59670; At1g30570; At2g04300; At2g14440; At2g28960; At2g28970; At2g37050; At3g46370; At5g39000; At5g54380; At5g59670; At5g59700; B1012G11.24; B1143G03.32; B1148D12.

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G48740.1	Leucine-rich repeat protein kinase family protein chr5:19765324-19769314 REVERSE LENGTH=895	64%
RefSeq	Arabidopsis thaliana	NP_199685.2	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002301786.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 73 aas, putative chimeric sequence, your sequence is shorter than subject: 383 - 458

Fln protein: MSDIPWYKMFSCPSSTSDPGSDRTEHIQKKSHIKAIIGGLVGGIAFVVIVCSALLIWYKRKHKQEDGRSMSKTDMRNWNAARRFTFKEIKLATNSFKETIGRGSFGSVYLGKLQEGNRVAVKVRFDPSQLAADSFINEVFLLSQVHHQNLVTLEGFCQEPKHQILVYEYLPEGALTDHLYGAKGKRNPLDWKKRLKIAVDAAAGIEYLHNGSNTKIIHRDVKCSNILLDSAMNAKVCDFGLSKQIVQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHTGSPDTYNLVLWAKPYLQAGDYNVVDKNLQNKYSTESLKRVASIASRCVERDASQRPTMAEVLSELKEALAIEETENPTTEEI*

Protein Length: 384

Fln nts: ATGGGGGAGAAGCGCGGGTGGGAATTAGGATAGTAGATTTATAATGGTGGTCACGCCAGTTCCTGCAGCAGCAAGCAAGCACACAATGATGGCATTTATGGTTTCCAGCTGCCTTTAGCATCATCTGCTACTGAAACTTCCATGAATGTTCAAAATAGTTTGAAAATTCACGAGATTTGTGTTCACTATAGGCAGTATGTAAGGGATTTCAGATTGGACTTTGTCCAGAAAACGGTATTGGGGCATGGAGTGGAGTAGTTGGAGAATTTTGGGTGTTGAAGGAGTCTAGAGGTATTCATAGAACTGTGGGCGTTAATTTTGGAGGATAGAAATTTTCAGAGAATCGTGGCTGTTCATCTGTATTGACTATTTCGAAAGAAGAATGAAGATGGAATAGCAGTGGAATTTCTCCAAGATATTTTTTATGATGTTTGTGTGTATGTTTCCCAGGGCAGAGTCGACTGAATGTTTGCTGTTATTGAGTGTGATTCAAGCCTAGTTGCCTACTTGCATACTTTTCAAAGATTTGTACTCTGTTTTGATAATATGAGCAGCTATTTCAAATGCAAGGCCTGCTTTATTTGGATATTTGAGCAGTGGTCACTCTCCCAAACTGGGTATATTATACATAGCCAAGACAAGAAAGAGGAGTAGATCAGGAACGAGAAATAGGTCTCTGGTTAGGTTCCTGGCAACATAGCCAGCATTTGTAAAGGAGAGAGCGTGGTGACCTTGGCTGTGACTCATCTTTTCAGCACATAGATGAGTTTATTAGCAAGTTGCCAATCATGGAGCATGGGAATTTGCATCTACTATGGTTGATTGTGGCAACTGTGTGCATATTTCTCCAGATTGGAGCGAGTGCGATCGAGAATCCAGAAGTGTCTGCTCTCCAGGCTATTCAAAGAGTTTATCGTTTAAACTTAGGCTGGGAAAATGATCCATGTTCTCCAGTTCCATGGAAGGGTCTTCAATGTGATGAAGCAAACGACGTTGTCTCTTTGGACCTCTCAAACATGAATCTACAGGGACCAATATCTGTTGCATTCGGGGACCTTCTAGATCTTCAAAACCTGGATTTGCATAATAACTCACTAACTGGACAAATTGAGAACTTTAATGCTCTCTCTCTACTTCAAACACTGAATCTGAGCTTCAACAAACTAAATGCACGCATACCTGACCTAAGTTCCTTAACTAGCTTGCAGAAACTGGATTTGCAAAACAACAGTCTTCAGGGGACAGTTCCGGAGAGCCTGGGAAGATTGCCAAGTCTTGACTTATTAAATTTGGAAAACAATCAACTTTATGGGAACCTGCCCATCTCCCTGAACAAGACTACACTGGATTTAAGAACATCGGGCAATCT_-_ATGTCTGACATTCCCTGGTACAAGATGTTCTCCTGCCCCTCCTCCACTTCAGACCCCGGAAGTGACAGAACCGAACATATCCAAAAGAAAAGCCACATCAAGGCTATTATTGGAGGCCTTGTAGGTGGAATAGCATTTGTTGTAATCGTGTGTTCAGCTCTACTAATATGGTACAAAAGAAAACACAAACAGGAGGATGGAAGGTCCATGTCAAAAACAGACATGAGAAATTGGAATGCAGCAAGACGGTTTACCTTCAAGGAAATTAAACTGGCAACAAATAGTTTTAAGGAGACAATAGGCCGTGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCAAGAGGGAAACCGTGTTGCTGTGAAAGTACGCTTTGATCCATCACAACTAGCAGCTGACTCTTTTATTAATGAGGTATTCTTGCTCTCCCAAGTTCACCATCAAAACCTTGTTACATTGGAAGGATTTTGTCAAGAGCCTAAGCATCAAATTTTGGTATATGAATATTTGCCCGAAGGAGCTCTGACAGATCATCTTTATGGTGCTAAAGGCAAAAGGAACCCATTGGACTGGAAGAAACGATTAAAAATTGCCGTGGACGCTGCAGCAGGAATCGAGTATCTTCACAATGGAAGTAATACCAAGATCATCCACCGTGATGTAAAGTGCAGCAACATTCTTCTGGATTCAGCCATGAATGCCAAAGTTTGTGACTTCGGCCTTTCTAAGCAAATTGTTCAAGCAGATGCAACTCATGTGACAACAGTTGTCAAGGGAACTGCCGGGTATCTTGACCCTGAGTATTATTCAACACAACAGCTGACTGAAAAAAGCGATGTCTATAGTTTTGGGGTGGTGCTTCTAGAGTTGATATGTGGACGTGAACCTTTGACTCACACAGGTTCCCCAGATACCTATAATCTGGTCTTATGGGCGAAGCCCTACCTACAGGCTGGAGACTACAATGTTGTAGACAAGAACCTTCAGAACAAGTACAGCACAGAAAGCTTAAAGAGAGTTGCTTCCATTGCCTCGAGGTGTGTGGAGAGAGATGCTTCACAGAGGCCAACTATGGCAGAAGTCCTGTCCGAGCTCAAGGAAGCCTTGGCTATTGAAGAAACTGAAAATCCAACGACTGAAGAGATCTGA___GCAATGACTATTCATACTAGAAATGGCCCGCCACAACTTACATTATTTTCTCAGTTTTCACCACATCATGGCATGGCAATCTTTATTTTCTTTCTTCCATTTTTCTATTGCAAAGAAACTAATTAAGTTATATGGCCATCTTCTGAGATGCCCGTAAAATATGTTCTTAGGGTGATAGCCTA

Fln Alignment:

Contig6433___DGRSMSKTDMRNWNAARRFTFKEIKLATNSFKET--IGRGSFGSVYLGKLQE-GNRVAVKVRFDPSQLAADSFINEVFLLSQVHHQNLVTLEGFCQEPKHQILVYEYLPEGALTDHLYGAKGKRNPLDWKKRLKIAVDAAAGIEYLHNGSNTKIIHRDVKCSNILLDSAMNAKVCDFGLSKQIVQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHTGSPDTYNLVLWAKPYL--QAGDYNVVDKNLQNKYSTESLKRVASIASRCVERDASQRPTMAEVLSEL
D5AAA3______________DSRKEVSRDGSQHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYRGRLESTGQAVAVKQLDRNGVQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGYHSKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTIKSDVYSFGVVLLELITGRKAIDNSRSAGENNLVAWARPLFKDRRKFSQMADPLLQCRYPMRGLYQALAVAAMCVQEQATMRPLIADVVTAL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
2182			33	66	0.997452
2402	12	87			0.992554
2404			12	87	0.992554
2405		87	12		0.992554
2555	11		88		0.923564
2557	11	88			0.923564
2558		77		22	0.999999
2560		77	11	11	0.968132
2569	75		25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain