SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6418

Length: 2247 nt

UniGene Fasta

>sp_v3.0_unigene6418
ATGGGGAGCCCGTGATGTTCACTCATAATTAGCTGGGCGATCTTGAGGTGGGGCTGGGTTTTTGGTTCCGGGATTCGAACGCGGATTAGACGAACACTCGACAAGATGAACAACCAGGGACAGAATACGGCAGGAGCTCAAAGCAGGAGGCAGAGCCTGACTCAAAGAAAAGGGTCGGCAACTTCAGTGAAGAAGCAGGTTCCTTCTGAGAACGGTAGCACTGGGAATGGTAGCATTGGATCTTTCAGGAAATCGGCGACGCCGCTTTCACCACCAACGTCGGGGGAGAGGACCGTGAAGAGGCTGAGATTGTCCAAGGCGCTCACTATTCCAGAGGGCACGTCGGTGTACGATGCTTGCCGTCGTATGGCCATGCGCAGGGTCGACGCTGCTCTGCTCACGGATCACAGCGCCTTACTCTCTGGAATCATAACCGACAAGGATGTGGCAACGAGGGTTATAGCTGAGGGTTTGAAGCCTCGCGACACACCGGTTTCAAAGGTCATGACGCGGAATCCAATCTTTGTCATGGCGGAGTCTTCGGCCGTAGAAGCCCTCGAGAAGATGATTGATGGGAAGTTTAGACACTTGCCGGTTGTGGAAAATAGCGAGGTCATTGCTCTGCTTGATATTACGAAGTGCCTCTATGACGCAATAGCAAAGATGGAAAAGGTCGCGGAAAAGGGCAGTGCTATTGCTGCTGCCGTCGAAGGCATCGAAAGACAATTTGGAGACGCTCCCAGTTCTTTTATTGAAACACTACGGGAACAAATATTCAGGCCCACTTTATCAACAGTCATCGCGGAAAATACAAAGGTGGCAACAGTTTCACCGTCTGAATCTGTGTATATGGCTGCAAAGAAGATGCGTGAATTTCGAGTCAATTCAGTCATCGTCACAACTGGGAATAAGCCTCAAGGAATTCTAACTTCAAAGGATTTGCTTACACGGATTGTTGCACACAACCTTTATCCAGAATCAACCCTCGTTGAAAAGGTGATGACACCAAGTCCAGACTGTACAACTGTTGACACAACAATTGTTGATGCATTGCACACCATGCACGATGGGAAATTTTTACATCTTCCAGTTGTTGATAAAGATGGATACATTTTGGCCTGTCTGGATGTTTTACAGCTAACACATGCAGCCATGGCCATGGTGGGAGGTTCAAGCTGTGCTGCAAGTGACACAGCAAGCACAATGATGCAGAAATTCTGGGATTCGACTCTGACATTAGAGCCACAGGAGATTGATGAGGATGGTCACAGTGATTTCTCTCCAAGGCAGTCAGTTGATGGTATAGAATCAGTAAAATCAGGATATCCATTGTTAGGTCTTGCGAATACATTTGATTTTAAGTTGCGCGATTCTAAGGGTCGCATTCATCGTTTCAACTGTGGATTTGAGAGCTTGACAGAGCTTGCTTCTGCTGTTGTTCAACGAATAGGAGATGATATTGATCAACTCCGGCCACCTCAGATTTTGTATGAAGATGATGAAGGTGATAAGGTCTTACTCTCCACTGATGGTGACCTTGTTGCAGCTGTAAATCATGCCAGGCAAGCAGGTTTGAAGGGACTGAAATTGCATGTTGATAGCTCGGTTCCAGAGGATAAGAAGACAGTTACGTCTACAGATTCTGTTGAGTTCGATCTTGCACGAAGGCATGACCGGTCTTCATCATACAGGACAGTTGTTGTAGGAGTGGCTTTGTTGGCAGGTGTTAGTATCTTGGTATATTTGAAAAGATCATCAAAGTAAAAGAACTAAACACGCTTGGCTTACAGGATCTCAAGGAAGGTAGATGCTTTGGTTTACAGTGATCAATTTAATATTAACACTTTAAAGTATATCAAGGAAGGTGGATGCCTTGGTTTACAGTGACCACTTAATTATTTCTAGATTTTAGTTAAGGAAATAGTAGATCTGTTTCAGGGTTCAACCAGATGTGGATTAAGCTATCTCGTTTAAATTTTAGTAAAAACCTACAAGGCAGCCTTTGATCGTAGTGTACTTGAGATAGAGACGGCTGGCCTTTGTGATATTTTGTCATGCTTCTGTAGAACTGTGCTGTGATAATCTTGTATAAATTTGTCCTCAAACATGCTCAACTACTCAACGCCTCCCTTTCACCAGCTCACCCTTTCATTCAATATCGGTTACTGACAATGCTGTAAATATGAGGTTCTTTCATGTATTTCAAAAATTTTGACCATTATTCTCACCTGTTCCTGTGCAAATTTG

Ace file of the UniGene sp_v3.0_unigene6418

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] ref\|NP_001190074.1\| CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana] emb\|CAB86899.1\| putative protein [Arabidopsis thaliana] gb\|AEE79016.1\|	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Emb\|CAB86899.1	-	-	6.823e-09	-

Source	Gene names
Sma3	At2g36500; At3g52950; At5g50530; At5g50640; At5g50640/MFB16_3; At5g63490; F8J2_120; GSVIVT00017958001; GSVIVT00019267001; GSVIVT00028868001; LOC_Os11g06930; LOC_Os12g07190; Os01g0923300; Os01g0961200; Os11g0170300; Os12g0169400; OsI_04983; OsI_35274; OsI_

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Apoptosis regulator, Bcl-2, BH	IPR000712	-	-
Sma3	Cytochrome c, class IA/ IB	IPR002327	-	-
Sma3	Cytochrome c, class I	IPR003088	-	-
Sma3	Cytochrome c domain	IPR009056	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52950.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein chr3:19634866-19636536 FORWARD LENGTH=556	59%
RefSeq	Arabidopsis thaliana	NP_001190074.1	CBS / octicosapeptide/Phox/Bemp1 domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002309952.1	predicted protein, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPZ1

Fln msg: your sequence is longer than subject: 553 - 205

Fln protein: MNNQGQNTAGAQSRRQSLTQRKGSATSVKKQVPSENGSTGNGSIGSFRKSATPLSPPTSGERTVKRLRLSKALTIPEGTSVYDACRRMAMRRVDAALLTDHSALLSGIITDKDVATRVIAEGLKPRDTPVSKVMTRNPIFVMAESSAVEALEKMIDGKFRHLPVVENSEVIALLDITKCLYDAIAKMEKVAEKGSAIAAAVEGIERQFGDAPSSFIETLREQIFRPTLSTVIAENTKVATVSPSESVYMAAKKMREFRVNSVIVTTGNKPQGILTSKDLLTRIVAHNLYPESTLVEKVMTPSPDCTTVDTTIVDALHTMHDGKFLHLPVVDKDGYILACLDVLQLTHAAMAMVGGSSCAASDTASTMMQKFWDSTLTLEPQEIDEDGHSDFSPRQSVDGIESVKSGYPLLGLANTFDFKLRDSKGRIHRFNCGFESLTELASAVVQRIGDDIDQLRPPQILYEDDEGDKVLLSTDGDLVAAVNHARQAGLKGLKLHVDSSVPEDKKTVTSTDSVEFDLARRHDRSSSYRTVVVGVALLAGVSILVYLKRSSK*

Protein Length: 554

Fln nts: ATGGGGAGCCCGTGATGTTCACTCATAATTAGCTGGGCGATCTTGAGGTGGGGCTGGGTTTTTGGTTCCGGGATTCGAACGCGGATTAGACGAACACTCGACAAG_-_ATGAACAACCAGGGACAGAATACGGCAGGAGCTCAAAGCAGGAGGCAGAGCCTGACTCAAAGAAAAGGGTCGGCAACTTCAGTGAAGAAGCAGGTTCCTTCTGAGAACGGTAGCACTGGGAATGGTAGCATTGGATCTTTCAGGAAATCGGCGACGCCGCTTTCACCACCAACGTCGGGGGAGAGGACCGTGAAGAGGCTGAGATTGTCCAAGGCGCTCACTATTCCAGAGGGCACGTCGGTGTACGATGCTTGCCGTCGTATGGCCATGCGCAGGGTCGACGCTGCTCTGCTCACGGATCACAGCGCCTTACTCTCTGGAATCATAACCGACAAGGATGTGGCAACGAGGGTTATAGCTGAGGGTTTGAAGCCTCGCGACACACCGGTTTCAAAGGTCATGACGCGGAATCCAATCTTTGTCATGGCGGAGTCTTCGGCCGTAGAAGCCCTCGAGAAGATGATTGATGGGAAGTTTAGACACTTGCCGGTTGTGGAAAATAGCGAGGTCATTGCTCTGCTTGATATTACGAAGTGCCTCTATGACGCAATAGCAAAGATGGAAAAGGTCGCGGAAAAGGGCAGTGCTATTGCTGCTGCCGTCGAAGGCATCGAAAGACAATTTGGAGACGCTCCCAGTTCTTTTATTGAAACACTACGGGAACAAATATTCAGGCCCACTTTATCAACAGTCATCGCGGAAAATACAAAGGTGGCAACAGTTTCACCGTCTGAATCTGTGTATATGGCTGCAAAGAAGATGCGTGAATTTCGAGTCAATTCAGTCATCGTCACAACTGGGAATAAGCCTCAAGGAATTCTAACTTCAAAGGATTTGCTTACACGGATTGTTGCACACAACCTTTATCCAGAATCAACCCTCGTTGAAAAGGTGATGACACCAAGTCCAGACTGTACAACTGTTGACACAACAATTGTTGATGCATTGCACACCATGCACGATGGGAAATTTTTACATCTTCCAGTTGTTGATAAAGATGGATACATTTTGGCCTGTCTGGATGTTTTACAGCTAACACATGCAGCCATGGCCATGGTGGGAGGTTCAAGCTGTGCTGCAAGTGACACAGCAAGCACAATGATGCAGAAATTCTGGGATTCGACTCTGACATTAGAGCCACAGGAGATTGATGAGGATGGTCACAGTGATTTCTCTCCAAGGCAGTCAGTTGATGGTATAGAATCAGTAAAATCAGGATATCCATTGTTAGGTCTTGCGAATACATTTGATTTTAAGTTGCGCGATTCTAAGGGTCGCATTCATCGTTTCAACTGTGGATTTGAGAGCTTGACAGAGCTTGCTTCTGCTGTTGTTCAACGAATAGGAGATGATATTGATCAACTCCGGCCACCTCAGATTTTGTATGAAGATGATGAAGGTGATAAGGTCTTACTCTCCACTGATGGTGACCTTGTTGCAGCTGTAAATCATGCCAGGCAAGCAGGTTTGAAGGGACTGAAATTGCATGTTGATAGCTCGGTTCCAGAGGATAAGAAGACAGTTACGTCTACAGATTCTGTTGAGTTCGATCTTGCACGAAGGCATGACCGGTCTTCATCATACAGGACAGTTGTTGTAGGAGTGGCTTTGTTGGCAGGTGTTAGTATCTTGGTATATTTGAAAAGATCATCAAAGTAA___AAGAACTAAACACGCTTGGCTTACAGGATCTCAAGGAAGGTAGATGCTTTGGTTTACAGTGATCAATTTAATATTAACACTTTAAAGTATATCAAGGAAGGTGGATGCCTTGGTTTACAGTGACCACTTAATTATTTCTAGATTTTAGTTAAGGAAATAGTAGATCTGTTTCAGGGTTCAACCAGATGTGGATTAAGCTATCTCGTTTAAATTTTAGTAAAAACCTACAAGGCAGCCTTTGATCGTAGTGTACTTGAGATAGAGACGGCTGGCCTTTGTGATATTTTGTCATGCTTCTGTAGAACTGTGCTGTGATAATCTTGTATAAATTTGTCCTCAAACATGCTCAACTACTCAACGCCTCCCTTTCACCAGCTCACCCTTTCATTCAATATCGGTTACTGACAATGCTGTAAATATGAGGTTCTTTCATGTATTTCAAAAATTTTGACCATTATTCTCACCTGTTCCTGTGCAAATTTG

Fln Alignment:

Contig6418___SVYDACRRMAMRRVDAALLTD--HSALLSGIITDKDVATRVIAEGLKPRDTPVSKVMTRNP--IFVMAESSAVEALEKMIDGKFRHLPVVENSEVIALLDI
A9NPZ1______________TVYDAVKSMTQHNVGALLVVKPVEEKSIAGIITERDYLRKIIVQGRSSKTTKVGDIMTEENKLITVTSDTKVLKAMQLMTDNRIRHIPVVEGKSMLGMVSI

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
476	66		33		0.997452
595			80	20	0.995493
602		40	60		1.0
738		75		25	0.996473
856		20		80	0.995493
876			16	83	0.994512
877			16	83	0.994512
1048		14		85	0.993533
1049	14		85		0.993533
1052		14		85	0.993533
1183		10		90	0.90298
1378	37		62		1.0
1636		10		90	0.999898
1665	11		88		0.999952
1805			50	8	1.0
1841	54		45		1.0
1865	12		87		0.992554
1890		88	11		0.923564
1891	88			11	0.923564
1893			11	88	0.923564
1895	88		11		0.923564
1897		11		88	0.923564
1898		11		88	0.923564
1899	88			11	0.923564
1901			11	88	0.923564
1902			11	88	0.923564
1905	88		11		0.923564
1906			88	11	0.923564
1907	88	11			0.923564
1908	16			83	0.994512
1909		16		83	0.994512
1911		16		83	0.994512
1980			66	33	1.0
2101		42	57		1.0
2180	88			11	0.923564
2181	88	11			0.923564
2182	88		11		0.923564
2183		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain