SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6412

Length: 2120 nt

UniGene Fasta

>sp_v3.0_unigene6412
ATGGGGGGCGAGAGGAGTGGCAGGCAGAAGAATAGAATAGAATAGAAGACCAAGAGCATGGGGAGGGACACGGACAGGGACAGTAAAATGGTGATACTTATGGTCTTGTCCCTGTCTCTGTCCCTCCAATGACCCTCCGCATCATTGGATGCATGCTCTTACCCGTTCGATTCGCACCCCTTATCTCTCCTGATTCTTCCTGATCCCTTCAAATTCTTTGGAGAATTGAATTAGAAATATTTTGCGCAGAAGAAGATATGTGCAAAAAAAAAGTATTTAAAAAGGGGATGTGAATTGGGCTTTTCCGTAAGCATTGCAGTTACCACAGCAATTATCAATAACAATGGAAGAACGTTTATCTAAATCCCCCAACGCCAACCACAAGCACAAGCACAAGCCCAAGGTGGTGGTCATAATGGGAGCCACGGGGTCCGGAAAATCGCGTCTTGCGATTGATTTGGCTCAGCACTTCCCTGCCGAGATCCTAAATGCCGACTGCATGCAGGTCTACGAAGGTTTGGACATCGTAACCAACAAAGTGCCAGTCGAGGAAAGAAAGGGAGTAATTCATCATCTTCTTGGTACAGTCAGTTCCAAAGTCAACTTCACATCATCGGATTTCCGTGACACAGCTATTCCTATTATTGATTCAATCATCTCTCGGAAACACTTGCCTATCATTGTTGGTGGCTCAAACTCCTACATACAGGCTCTTGTAAGCACGGTAGATGATGTGATGAAGAATGGAGATGATGACCTCAAAACGAGCGAAAGACCTTTTGGCATTTGTAGTAATGCAGGAAGTGTCAATGACCTACATAAAAGATGTGACAATGATGTTCAAAATACAAGTAATCAATTTGATCAAGTTGAAGATATTGATTTAATTACAACCAATGGACTTCATTCTATTGATTTCAGTCAGGGAAGTGCCGATGATTTACATAAAAGATGCAATGATGATGTTCAAAATACAAGTAATAAATTTGATCTGATTGCAACTAATGGAGTTCATCCTACTGATTTTAGTAAGGGGCAGAAAGGGGATACAGCAGATTCTTTCAGATATGATTGCTGTTTTTTGTGGTTAGATGCTTCATTGCCTGTACTTGACAAATTTGTTGAGGACAGAGTGGATTTTATGATTGAAGCCGGTTTACTTGAAGAAGTATCTGCATTTTATGATCCTAGGGCAAATTATAAACATGGCTTGTGGCAAGCTATTGGGTTGCGCGAATTTGAGGAATTTTTCAATGCTTTTCCCCCAAGTAAAGCTAAAGGCCAAGAAATAGAAAAATTAGATAAGGGGAGTCACAAGATCCTGTTAGATGCTGCCATTGAAAGGATGAAGATAAACACTTGCCAACTTGTACGCAAACAAAAACAACGAATCAGTCGACTGAAAACATTCTCTGGTTGGAACCTGCATCAACTTGATTCAACAAAAGCTCTAGAAACATCTGGCTCTGAATCGCTTGAACATTGGGAAATGATGGTAGTCAATATTAGTATGGACGTGGTGAAAAGGTTTTTGTCTGAGCGCACATGTGAAACAAGCTTAAAAGAAAATGTGGAATCCAGAGGTGACTCTATGCATCCAGAGCAAGCACAAGATTTATGGATACATTCCTGTGAGGCTTGCAGAGATCAAGTGCTTCAGGGAGCACATGAATGGGAGAAACATAAACTTGGTCGTTCACATCGAAGGCAAATTCTGTGACTTGAAGTAATTCAATGACTCGAAAAATGACTTACAAGATTAAATAGTGAGAATCAAGTAGTGGAGGCACAAATTTGGTTTCTTAACATCTGAACAAACTTTGATGAGCTTGTTTGTTAAGGAAAAATGATTGCAAGCTTGATTATAGAAGGAAAAAAACACTCATAGAGAATTTTCTTTTCTGTGATTGCTCATTTCCGAGCGTTTTTGAACTAAAATGCTTTGGATTGTGAGATGGAAAATTGCAAATGTTTGGATGGTTACCGTACTTATCATCATAGCGTTAATTAATGTGATCTTTATGATTCCAAAATTTATAATTAGGGCACGACATGAGTTGTAACTTCCAACGCTAGATGTTAAATCTGCATTTTTACTGTCTTGACAGCCTGAATTTCAT

Ace file of the UniGene sp_v3.0_unigene6412

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative tRNA isopentenylpyrophosphatase [Ipomoea trifida]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Sma3	Adenylate isopentenyltransferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Adenylate dimethylallyltransferase.	EC:2.5.1.27	-	1.375e-32	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Zeatin biosynthesis	00908		1.375e-32	%
Sma3	Biosynthesis of plant hormones	01070		1.375e-32	%
Sma3	Transferred entry: 2.5.1.75.	EC:2.5.1.8	-	9.516e-10	-

Source	Gene names
Sma3	AIPT; AT4g24650; At1g25410; At3g63110; At4g24650; At5g19040; AtIPT1; AtIPT3; AtIPT4; AtIPT5; AtIPT6; AtIPT7; BrIPT1; BrIPT3; BrIPT5; BrIPT7; F22K18.150; F2J7.12; GSVIVT00022073001; GSVIVT00023277001; GSVIVT00023692001; GSVIVT00030350001; IPT; IPT1; IPT2;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3		GO:0004811	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	AMP dimethylallyltransferase activity	GO:0009824	Molecular Function	-
Sma3	tRNA processing	GO:0008033	Biological Process	-
Sma3	cytokinin biosynthetic process	GO:0009691	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	tRNA isopentenyltransferase	IPR002627	-	-
Sma3	Guanylate kinase	IPR008144	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	tRNA delta(2)-isopentenylpyrophosphate transferase	IPR018022	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNK3

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MEERLSKSPNANHKHKHKPKVVVIMGATGSGKSRLAIDLAQHFPAEILNADCMQVYEGLDIVTNKVPVEERKGVIHHLLGTVSSKVNFTSSDFRDTAIPIIDSIISRKHLPIIVGGSNSYIQALVSTVDDVMKNGDDDLKTSERPFGICSNAGSVNDLHKRCDNDVQNTSNQFDQVEDIDLITTNGLHSIDFSQGSADDLHKRCNDDVQNTSNKFDLIATNGVHPTDFSKGQKGDTADSFRYDCCFLWLDASLPVLDKFVEDRVDFMIEAGLLEEVSAFYDPRANYKHGLWQAIGLREFEEFFNAFPPSKAKGQEIEKLDKGSHKILLDAAIERMKINTCQLVRKQKQRISRLKTFSGWNLHQLDSTKALETSGSESLEHWEMMVVNISMDVVKRFLSERTCETSLKENVESRGDSMHPEQAQDLWIHSCxxLAEIKCFREHMNGRNINLVVHIEGKFCDLK*

Protein Length: 464

Fln nts: ATGGGGGGCGAGAGGAGTGGCAGGCAGAAGAATAGAATAGAATAGAAGACCAAGAGCATGGGGAGGGACACGGACAGGGACAGTAAAATGGTGATACTTATGGTCTTGTCCCTGTCTCTGTCCCTCCAATGACCCTCCGCATCATTGGATGCATGCTCTTACCCGTTCGATTCGCACCCCTTATCTCTCCTGATTCTTCCTGATCCCTTCAAATTCTTTGGAGAATTGAATTAGAAATATTTTGCGCAGAAGAAGATATGTGCAAAAAAAAAGTATTTAAAAAGGGGATGTGAATTGGGCTTTTCCGTAAGCATTGCAGTTACCACAGCAATTATCAATAACA_-_ATGGAAGAACGTTTATCTAAATCCCCCAACGCCAACCACAAGCACAAGCACAAGCCCAAGGTGGTGGTCATAATGGGAGCCACGGGGTCCGGAAAATCGCGTCTTGCGATTGATTTGGCTCAGCACTTCCCTGCCGAGATCCTAAATGCCGACTGCATGCAGGTCTACGAAGGTTTGGACATCGTAACCAACAAAGTGCCAGTCGAGGAAAGAAAGGGAGTAATTCATCATCTTCTTGGTACAGTCAGTTCCAAAGTCAACTTCACATCATCGGATTTCCGTGACACAGCTATTCCTATTATTGATTCAATCATCTCTCGGAAACACTTGCCTATCATTGTTGGTGGCTCAAACTCCTACATACAGGCTCTTGTAAGCACGGTAGATGATGTGATGAAGAATGGAGATGATGACCTCAAAACGAGCGAAAGACCTTTTGGCATTTGTAGTAATGCAGGAAGTGTCAATGACCTACATAAAAGATGTGACAATGATGTTCAAAATACAAGTAATCAATTTGATCAAGTTGAAGATATTGATTTAATTACAACCAATGGACTTCATTCTATTGATTTCAGTCAGGGAAGTGCCGATGATTTACATAAAAGATGCAATGATGATGTTCAAAATACAAGTAATAAATTTGATCTGATTGCAACTAATGGAGTTCATCCTACTGATTTTAGTAAGGGGCAGAAAGGGGATACAGCAGATTCTTTCAGATATGATTGCTGTTTTTTGTGGTTAGATGCTTCATTGCCTGTACTTGACAAATTTGTTGAGGACAGAGTGGATTTTATGATTGAAGCCGGTTTACTTGAAGAAGTATCTGCATTTTATGATCCTAGGGCAAATTATAAACATGGCTTGTGGCAAGCTATTGGGTTGCGCGAATTTGAGGAATTTTTCAATGCTTTTCCCCCAAGTAAAGCTAAAGGCCAAGAAATAGAAAAATTAGATAAGGGGAGTCACAAGATCCTGTTAGATGCTGCCATTGAAAGGATGAAGATAAACACTTGCCAACTTGTACGCAAACAAAAACAACGAATCAGTCGACTGAAAACATTCTCTGGTTGGAACCTGCATCAACTTGATTCAACAAAAGCTCTAGAAACATCTGGCTCTGAATCGCTTGAACATTGGGAAATGATGGTAGTCAATATTAGTATGGACGTGGTGAAAAGGTTTTTGTCTGAGCGCACATGTGAAACAAGCTTAAAAGAAAATGTGGAATCCAGAGGTGACTCTATGCATCCAGAGCAAGCACAAGATTTATGGATACATTCCTGTxxxxxxCTTGCAGAGATCAAGTGCTTCAGGGAGCACATGAATGGGAGAAACATAAACTTGGTCGTTCACATCGAAGGCAAATTCTGTGACTTGAAGTAA___TTCAATGACTCGAAAAATGACTTACAAGATTAAATAGTGAGAATCAAGTAGTGGAGGCACAAATTTGGTTTCTTAACATCTGAACAAACTTTGATGAGCTTGTTTGTTAAGGAAAAATGATTGCAAGCTTGATTATAGAAGGAAAAAAACACTCATAGAGAATTTTCTTTTCTGTGATTGCTCATTTCCGAGCGTTTTTGAACTAAAATGCTTTGGATTGTGAGATGGAAAATTGCAAATGTTTGGATGGTTACCGTACTTATCATCATAGCGTTAATTAATGTGATCTTTATGATTCCAAAATTTATAATTAGGGCACGACATGAGTTGTAACTTCCAACGCTAGATGTTAAATCTGCATTTTTACTGTCTTGACAGCCTGAATTTCAT

Fln Alignment:

Contig6412___MQVYEGLDIVTNKVPVEERKGVIHHLLGTVSSKVNFTSSDFRDTAIPIIDSIISRKHLPIIVGGSNSYIQALVSTVDDVMKNGDDDLKTSERPFGICSNAGSVNDLHKRCDNDVQN------------------------------------------TSNQFDQVEDIDLITTNGLHSIDFSQGSADDLHKRCNDDVQNTSNKFD------LIATNGVHPTDFSKGQKGDTADSFRYDCCFLWLDASLPVLDKFVEDRVDFMIEAGLLEEVSAFYDPRANYKHGLWQAIGLREFEEFFNAFPPSKAKGQEIEKLDKGSHKILLDAAIERMKINTCQLVRKQKQRISRLKTFSGWNLHQLDSTKALETSGSESLEHWEMMVVNISMDVVKRFLSERTCETSLKENVESRGDSMHPEQAQDLWIHSCExRLAEIKCFREHMNGRNINLVVHIEGKFCDLK*FNDSKNDLQD
B8LNK3______________MQVYEGLDIVTNKVPVEERNGVTHHLLGTINSSINFTPKDFRDMAIPIIDSIISRKHLPIVVGGSNSYIQALACS-------GDDDLKTSKRPFSICSNAGNVNDLHKRCDNDVQNISNQFDEVEEIDPIPTNGFCPNDFIRGSANDLHKKCDDDVRNTSNQFDQVEEIDPIATNGLHPNDFSKASANDLHKICDDDVRNTSNQFDQVEEIDLIAPNGLHPNDFSKGQKWDAADSFRYDCCFLWLDASLPVLDKFVEDRVDFMIEAGLLEEVSAFYDPKADYTHGLWQAIGLREFEEFFNAFPPED-NGQEIEKLDKGRHKILLDAAIERMKTNTCQLVRRQKLRIDRLKTFFGWNLHRLDSTKALETSGSESLEHWEMMVVNISMDTVKRFLSEHACEASLKENVETRVDSTHPEHAQEFWTHACExRLAEIKCFREHMNGSNINLVVHIGGKFCDLTKFSDSKNNLQD

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
660	14	85			0.993533
662		85	14		0.993533
663			14	85	0.993533
664		85	14		0.993533
677	12	87			0.992554
679	87		12		0.992554
680			12	87	0.992554
681		87	12		0.992554
794	12		87		0.992554
1070	80		20		0.995493
1071			20	80	0.995493
1181		10		90	0.90298
1183			10	90	0.90298
1189		90	10		0.90298
1191		10		90	0.90298
1247	83			16	0.994512
1249	16			83	0.994512
1257		12		87	0.992554
1355		16		83	0.994512
1357	83			16	0.994512
1358	83			16	0.994512
1679	90		10		0.90298
1707	89		10		0.999919
1743		93		6	0.999364
1803		9		90	0.999872

SSRs (tot: 2)

Start position	End position	Sequence	Length
29	47	AGAAT AGAAT AGAAT AGAA	19
380	398	CACAAG CACAAG CACAAG C	19

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain