SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6402

Length: 2455 nt

UniGene Fasta

>sp_v3.0_unigene6402
CGTCGTGACCTTGGCTGTCACTCATTTTATCATATATAGATTTGAGTAGGAATAATCTGAGTGGCCCAATTCCTTCCACAATCACCAATCTGGGCATCCTTAATTATCTGAATATCTCGCGGAATCATTTCTCTGGAAGCATTCCTGTTGAATTAGAGCAGATGCAGAGCTTGACTTCTGTGGATTTCTCCCACAATAATCTGTCTGGTGTTGTACCAAATGGTGGCCAGTTCACTTTCTTCAATGCAACTTCCTTCGTTGGGAACCCTGGATTGTGTGGGCTGTATCTGGGACCTTGCACAGTTCAGCCCAATTCGCCGCATGCTCATGTTAAGGGTTCTTCGATTTCTTCCACTGTAAAGCTGGTTCTGGTCATAGGTTTGCTATTATGCTCACTGGTTTTTGCCTCTGCCGCCATCATCAAAGCCAGGGCTTTGAAGAAAAGTAATGCTTCAAGATCCTGGAAGCTAACAGCATTCCAGAGGCTGGACTTCACCTGTGAAGATGTCCTGGAGTGTTTGAAAGAGGAAAATATTATTGGGAAGGGAGGAGCAGGGGTTGTGTATAAGGGTTCGATGCGGAGCGGTGAGGAATTTGCAGTGAAGAGGTTGCCTGGGATTGGAAGAGGGTCTTCTCACGACCATGGTTTTGCTGCAGAGATTCAGACTTTGGGCAAGATTCGACATCGCCATATAGTGAGACTGTTGGGGTTTTGCTCAAATCAAGAAATCAATTTGCTTGTTTACGAGTACATGCCAAACGGAAGCCTGGGAGAGTTACTACATGGGAAGAAAGGTGGGCATTTACAATGGGCTACCAGATACAAGATTGCTGTTGAGGCAGCTAAAGGGCTCTGCTATTTGCACCATGATTGCTGCCCGATTATAATACACCGTGATGTAAAGTCCAACAACATTCTCTTGGATTCCAATTTTGAGGCCCATGTAGCCGATTTCGGCCTTGCAAAGTTTTTGCAGGATTCGGGGGCTTCGGAATGTATGTCTTCCATTGCAGGTTCCTATGGTTACATTGCTCCAGAATATGCATACACGCTGAAAGTGGATGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTGCTGGAACTAGTCACTGGTAGAAGGCCCGTGGGGGAGTTTGGAGATGGTGTAGATATTGTTCAATGGGTAAACAAGATGACTAACTCAACCAAGGAAGGAGTTTCAAACATTTTGGACGAGAGACTGTCGTCAGTTCCTTTGCACGACGTTATCCACGTTTTCTGTGTGGCAATGGCATGTGTCGAAGAACATAGCGTAGAGAGGCCTACCATGAGAGAGGTTGTTCAGATGCTCAGTGACATTCCAAAGATCAAACCTTCTGAAAATCCCCTACCTGCTTCAGAAGGAGCGGAATCCCCCCAACAAGCCGGTGCTGCCCACCCTCCTGATCTCCTCTCTATTTGAATCCATTTTCAAATTTTCATTGTTAGTACACATGGTCAGTGCCAGTTAATATTGTCAAAATTCATAGACAGAATATCAGTTAGCAGTAGCCACCTCAAAATTCCTTTCAGGAGGGTAATTAATTTACTCGTATGCATTCTGTGAGTTCTGTTGTTGGTTGTGGGAGTGAAATTTATTCACTCATTTTCCTCTAGTGAGACACCATTTTCTAGTTACCAGGATATGCTCCATGTTCTATGAGAGAAGGACAGCACTTTTTAATGCAGATCACTTGCACATGACTGTGTTGGTTGATCACTTGAGATATGAATAGAACTAGATCTAGATGCTATAGGAATGTTTTATTTTAAATACATTAAGTTACCTTCATGTGGGCAATTAGCCTTGCTTTTCTTGTCAAACCCCTTCTCCACTCGTAAAATGCAATCAACACTTCCGAAATTTATCAACCTGTCTTCTATAAAGAAGGAAGAAAGATTTCAAGGAAGACATTGATTATGTTAATCCAACTTTCTAGCCCATTTCTCCTGTCTTGTCTTGGCCAGAATTCTGATTGTCATTGACCAGCAATGGCAACGAAGATTTTCCAAACAATCTTTCCAAGCTCAACAGATCAGACTCTTAGGGAAAACATACGGCGACTAGATGGGAAGTGATTTAGAATAAACAAAGCCCGAGGCTGGGGAACCTATGTTCTGTTTTGTAAAGCAAGGGCTTATAGGCCTTCACGGAAGGCATGTCTGTAGATGTGCGGTTTGTTTTATAAATTTTCTGTCAAATTCTAATATCTACGGTGACTAGATGGGAAGTGATTTCGATTAAACAAAGCATGAGGCTGGGAAACCTATGTTCTATTTTGTAAAGCAAGGGCTTATAAGAATTCATGGAAGGCATGTCTGTAGATGTGCTGTTTGTTTTTATAAATTCTCTGTCAAATTGTAATATCGTTAAGGAATGCCCTTTGGCTTATTTGTATTTGCACGGAAATTATAATACATTTTGAAAGGAAA

Ace file of the UniGene sp_v3.0_unigene6402

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN	-	-	0.0	68%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	47%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	7.862e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	8.172e-26	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.18e-17	-
Sma3		EC:2.7.11.3-	-	6.137e-09	-

Source	Gene names
Sma3	AT1G28440; AT1G34110; AT1G75820; AT2G33170; AT3G49670; AT4G20140; AT4G20270; AT4G28490; AT4G28650; AT4g20140; AT4g20270; AT5G48940; AT5G49660; AT5G61480; AT5G63930; AT5G65700; AT5G65710; At1g09970; At1g09970/F21M12.36; At1g17230; At1g28440; At1g75820; At2

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	epidermis development	GO:0008544	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65700.1	BAM1 Leucine-rich receptor-like protein kinase family protein chr5:26281826-26284945 FORWARD LENGTH=1003	72%
RefSeq	Arabidopsis thaliana	NP_001190624.1	leucine-rich receptor-like protein kinase BAM1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002310320.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 481 - 998

Fln protein: S*PWLSLILSYIDLSRNNLSGPIPSTITNLGILNYLNISRNHFSGSIPVELEQMQSLTSVDFSHNNLSGVVPNGGQFTFFNATSFVGNPGLCGLYLGPCTVQPNSPHAHVKGSSISSTVKLVLVIGLLLCSLVFASAAIIKARALKKSNASRSWKLTAFQRLDFTCEDVLECLKEENIIGKGGAGVVYKGSMRSGEEFAVKRLPGIGRGSSHDHGFAAEIQTLGKIRHRHIVRLLGFCSNQEINLLVYEYMPNGSLGELLHGKKGGHLQWATRYKIAVEAAKGLCYLHHDCCPIIIHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRRPVGEFGDGVDIVQWVNKMTNSTKEGVSNILDERLSSVPLHDVIHVFCVAMACVEEHSVERPTMREVVQMLSDIPKIKPSENPLPASEGAESPQQAGAAHPPDLLSI*

Protein Length: 482

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATCATATATAGATTTGAGTAGGAATAATCTGAGTGGCCCAATTCCTTCCACAATCACCAATCTGGGCATCCTTAATTATCTGAATATCTCGCGGAATCATTTCTCTGGAAGCATTCCTGTTGAATTAGAGCAGATGCAGAGCTTGACTTCTGTGGATTTCTCCCACAATAATCTGTCTGGTGTTGTACCAAATGGTGGCCAGTTCACTTTCTTCAATGCAACTTCCTTCGTTGGGAACCCTGGATTGTGTGGGCTGTATCTGGGACCTTGCACAGTTCAGCCCAATTCGCCGCATGCTCATGTTAAGGGTTCTTCGATTTCTTCCACTGTAAAGCTGGTTCTGGTCATAGGTTTGCTATTATGCTCACTGGTTTTTGCCTCTGCCGCCATCATCAAAGCCAGGGCTTTGAAGAAAAGTAATGCTTCAAGATCCTGGAAGCTAACAGCATTCCAGAGGCTGGACTTCACCTGTGAAGATGTCCTGGAGTGTTTGAAAGAGGAAAATATTATTGGGAAGGGAGGAGCAGGGGTTGTGTATAAGGGTTCGATGCGGAGCGGTGAGGAATTTGCAGTGAAGAGGTTGCCTGGGATTGGAAGAGGGTCTTCTCACGACCATGGTTTTGCTGCAGAGATTCAGACTTTGGGCAAGATTCGACATCGCCATATAGTGAGACTGTTGGGGTTTTGCTCAAATCAAGAAATCAATTTGCTTGTTTACGAGTACATGCCAAACGGAAGCCTGGGAGAGTTACTACATGGGAAGAAAGGTGGGCATTTACAATGGGCTACCAGATACAAGATTGCTGTTGAGGCAGCTAAAGGGCTCTGCTATTTGCACCATGATTGCTGCCCGATTATAATACACCGTGATGTAAAGTCCAACAACATTCTCTTGGATTCCAATTTTGAGGCCCATGTAGCCGATTTCGGCCTTGCAAAGTTTTTGCAGGATTCGGGGGCTTCGGAATGTATGTCTTCCATTGCAGGTTCCTATGGTTACATTGCTCCAGAATATGCATACACGCTGAAAGTGGATGAAAAGAGTGATGTCTATAGCTTTGGAGTAGTTCTGCTGGAACTAGTCACTGGTAGAAGGCCCGTGGGGGAGTTTGGAGATGGTGTAGATATTGTTCAATGGGTAAACAAGATGACTAACTCAACCAAGGAAGGAGTTTCAAACATTTTGGACGAGAGACTGTCGTCAGTTCCTTTGCACGACGTTATCCACGTTTTCTGTGTGGCAATGGCATGTGTCGAAGAACATAGCGTAGAGAGGCCTACCATGAGAGAGGTTGTTCAGATGCTCAGTGACATTCCAAAGATCAAACCTTCTGAAAATCCCCTACCTGCTTCAGAAGGAGCGGAATCCCCCCAACAAGCCGGTGCTGCCCACCCTCCTGATCTCCTCTCTATTTGA___ATCCATTTTCAAATTTTCATTGTTAGTACACATGGTCAGTGCCAGTTAATATTGTCAAAATTCATAGACAGAATATCAGTTAGCAGTAGCCACCTCAAAATTCCTTTCAGGAGGGTAATTAATTTACTCGTATGCATTCTGTGAGTTCTGTTGTTGGTTGTGGGAGTGAAATTTATTCACTCATTTTCCTCTAGTGAGACACCATTTTCTAGTTACCAGGATATGCTCCATGTTCTATGAGAGAAGGACAGCACTTTTTAATGCAGATCACTTGCACATGACTGTGTTGGTTGATCACTTGAGATATGAATAGAACTAGATCTAGATGCTATAGGAATGTTTTATTTTAAATACATTAAGTTACCTTCATGTGGGCAATTAGCCTTGCTTTTCTTGTCAAACCCCTTCTCCACTCGTAAAATGCAATCAACACTTCCGAAATTTATCAACCTGTCTTCTATAAAGAAGGAAGAAAGATTTCAAGGAAGACATTGATTATGTTAATCCAACTTTCTAGCCCATTTCTCCTGTCTTGTCTTGGCCAGAATTCTGATTGTCATTGACCAGCAATGGCAACGAAGATTTTCCAAACAATCTTTCCAAGCTCAACAGATCAGACTCTTAGGGAAAACATACGGCGACTAGATGGGAAGTGATTTAGAATAAACAAAGCCCGAGGCTGGGGAACCTATGTTCTGTTTTGTAAAGCAAGGGCTTATAGGCCTTCACGGAAGGCATGTCTGTAGATGTGCGGTTTGTTTTATAAATTTTCTGTCAAATTCTAATATCTACGGTGACTAGATGGGAAGTGATTTCGATTAAACAAAGCATGAGGCTGGGAAACCTATGTTCTATTTTGTAAAGCAAGGGCTTATAAGAATTCATGGAAGGCATGTCTGTAGATGTGCTGTTTGTTTTTATAAATTCTCTGTCAAATTGTAATATCGTTAAGGAATGCCCTTTGGCTTATTTGTATTTGCACGGAAATTATAATACATTTTGAAAGGAAA

Fln Alignment:

Contig6402___LSYIDLSRNNLSGPIPSTITNLGILNYLNISRNHFSGSIPVELEQMQSLTSVDFSHNNLSGVVPNGGQFTFFNAT---SFVGNPGLCGLYLGPCTVQPNSPHAHVKGSSISSTXXXXXXXXXXXXXXXFASAAIIKARAL---------------KKSNASRSWKLTAFQRLDFTCEDVLECLKEENIIGKGGAGVVYKGSMRSGEEFAVKRLPGIGR-GSSHDHGFAAEIQTLGKIRHRHIVRLLGFCSNQEINLLVYEYMPNGSXXXXXXXXXXXXXQWATRYKIAVEAAKGLCYLHHDCCPIIIHRDVKSNNILLDSNFEAHVADFGLAKFLQD-SGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRRPVG-EFGDGVDIVQWV-NKMTNSTKEGVSNILDERLSSVPLHDVIHVFCVAMACVEEHSVERPTMREVVQMLSD
Q19AV8______________LGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLK-LNTFDVSNNRLSGAVP----LAFANPVYEKSFLGNPELCS----------REAFNGTKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKI--EKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1464	16			83	0.994512
1489		80		20	0.995493
1527			16	83	0.994512
1528			16	83	0.994512
1563	60			40	1.0
1596			33	66	0.997452
1882	18			81	0.999994
2133	77			22	0.999999
2288	66		33		0.997452
2444	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain