SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6386

Length: 1646 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6386

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-cytochrome b5 reductase-like protein [Arabidopsis thaliana] sp\|P83291.2\|NCB5R_ARATH RecName: Full=NADH-cytochrome b5 reductase-like protein; Short=B5R gb\|AAM64833.1\| cytochrome-b5 reductase-like protein [Arabidopsis thaliana] gb\|ABD59058.1\| At5g20080	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	NADH-cytochrome b5 reductase-like protein	-	-	1.353e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cytochrome-b5 reductase.	EC:1.6.2.2	-	1.798e-22	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.798e-22	%

Source	Gene names
Sma3	At5g20080; CBR1; CBR1A; CBR1B; CHLREDRAFT_163751; F28I16.230; GSVIVT00001688001; GSVIVT00016861001; GSVIVT00017362001; GSVIVT00033711001; MVA3.13; NFR; NFR II; OJ1119_H02.12; OSJNBa0085D07.31; OSJNBa0089K24.21; Os01g0174300; Os01g0814900; Os05g0488900; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrial intermembrane space	GO:0005758	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	cytochrome-b5 reductase activity	GO:0004128	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	molybdenum ion binding	GO:0030151	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	GO:0046857	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Moybdenum cofactor oxidoreductase, dimerisation	IPR005066	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Eukaryotic molybdopterin oxidoreductase	IPR008335	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Nitrate reductase NADH dependent	IPR012137	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20080.1	FAD/NAD(P)-binding oxidoreductase chr5:6782708-6786360 FORWARD LENGTH=328	75%
RefSeq	Arabidopsis thaliana	NP_568391.1	NADH-cytochrome b5 reductase-like protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002309454.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRC8

Fln msg: your sequence is longer than subject: 336 - 281

Fln protein: MGLMANRCGKAVQLTLRCWRSHSTISYSTVSHHGRSTDNSSWRNGYAIAAVGSILGAATCCFSEAHAEPPPTKITEKTALNPKEWVQFKLEETARVSHNTNIYRFSFDPDAKLGLRVASCIITRAPLGTDKEGKPKYVIRPYTPISDPESKGYFDLLIKAYPEGKMSQHFAQLKPGDTLDVKGPIEKLPYHPNMKKHIGMVAGGTGITPMLQIIDAILKNPEDITKVSLLYANVSPDDILLKEKLDALSSSHPNFKVYYVVDKPVSGWRGGVGYISKEMVLKGLPCPSEETLILVCGPPGMMNHISGDKAPDRSQGEVSGLLKEVGYTKDMVYKF*

Protein Length: 337

Fln nts: ATGGGGATCCCAATTTTAAAAGTAGCTAATAAATTTAAAAATAAAAGGAGGCGGACGTGACTGACTGGGGGAAGATCGCAAGAATACCGAGACATTAGCTGTGACCTCTGTTTTTCCCAGACTCGAATCAAATCAACCTCTGTATTTGTTTTGACATTC_-_ATGGGTTTGATGGCGAATCGATGCGGCAAGGCCGTACAGCTTACTCTCAGATGCTGGAGGTCTCATTCCACCATATCCTACTCCACCGTTTCCCATCACGGACGCTCAACCGACAATTCCAGCTGGAGGAATGGATACGCCATTGCGGCCGTGGGTTCAATTCTCGGCGCAGCTACATGTTGCTTCTCCGAGGCTCATGCAGAACCTCCTCCAACTAAAATCACTGAAAAAACAGCACTTAATCCAAAGGAATGGGTTCAATTCAAATTGGAAGAGACTGCAAGAGTTAGCCACAACACAAACATATACAGGTTTTCATTTGACCCCGATGCTAAACTAGGGCTTCGTGTTGCTTCATGTATCATTACAAGGGCTCCGTTAGGAACTGACAAAGAAGGAAAACCAAAATATGTTATTCGTCCGTATACTCCTATTTCTGATCCGGAATCAAAGGGATATTTTGATTTGCTAATCAAGGCATACCCTGAAGGAAAAATGAGCCAGCATTTTGCACAACTAAAGCCAGGGGACACACTTGATGTGAAAGGGCCCATTGAAAAGCTTCCATACCATCCTAACATGAAGAAACATATTGGAATGGTTGCGGGAGGAACAGGAATAACCCCCATGCTACAGATTATTGATGCTATTCTTAAAAATCCAGAGGATATCACGAAGGTATCTCTATTATACGCCAATGTATCTCCGGATGATATATTACTTAAAGAGAAGCTGGATGCCCTTTCTTCTAGCCACCCAAATTTCAAGGTTTACTATGTTGTGGATAAACCAGTGAGTGGGTGGAGAGGTGGGGTTGGTTACATATCAAAGGAAATGGTCTTGAAAGGCTTGCCTTGTCCTTCAGAAGAGACTCTTATACTTGTCTGTGGTCCACCTGGAATGATGAATCATATCTCTGGAGATAAAGCTCCAGACAGATCACAAGGCGAGGTGTCTGGACTACTTAAGGAAGTGGGATACACAAAGGATATGGTGTACAAGTTTTGA___GCAATAACTTCAATCGGATGTTGAATAAGCCTTCATCAAAAGGCAGGACAAATCATTTTTTGATCAATTCACCCATGAATTGATCCACACTATAGTTACATAGAAAACAATATGCAAATGCTTGAAAGCATACCAATGCTGCAGAAATGCATTTTCTGGTTTCTTTCTTCTCATTTTTAATCATTGTGATCGATATGGAAGGTGAAGATATGGCATAGTTTGTTCATCTCTTCCTGTAATGAGCCTTTATGTGGCTAATAAATGGGAATAATGAAACGAAATCAAGGGTAAAACCAGTTGTTAAAACAGAGGACACCTCAGTTAAAGCTATAATAGTACACAGTAGATGCACAATAAAAGATATGTATGGTAAGCCACGTTGCATTTCTATAACTCAGTCACCTATGAGATAACAATTAAGGCATGTCCTGTAGATCAGCTTGAGCTTGTTTTCAATTTAATTACAACAATAATTTTAG

Fln Alignment:

Contig6386___KTALNPKEWVQFKLEETARVSHNTNIYRFSFD-PDAKLGLRVASCIITRAPLGTDKEGKPKYVIRPYTPISDPESKGYFDLLIKAYPEGKMSQHFAQLKPGDTLDVKGPIEKLPYHPNMKKHIGMVAGGTGITPMLQIIDAILKNPEDITKVSLLYANVSPDDILLKEKLDALSSSHP-NFKVYYVVDKPVSGWRGGVGYISKEMVLKGLPCPSEETLILVCGPPGMMNHISGDKAPDRSQGEVSGLLKEVGYTKDMVYKF
A9NRC8______________KPCLDPENWKKFKLVQRTQLSHNVAKFRFALPTPTSVLGLPIGQHISCQ---GKDAEGEE--VLKPYTPTTLDSDVGYFDLVIKMYPLGRMSHHFRKLQEGEYLAVKGPKGRFKYQPGQVRAFGMLAGGSGITPMFQVTRAILENPKDKTNVYLIYGNVTYEDILLKDELDSLMKNYPGRFRVYHVLNQPPEGWTGGVGFVSKEMIQTHCPAPASDIQILRCGPPPM------NKA-------MANHLDELGYTKEMQFQF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
411	20		80		0.995493
592		87		12	0.992554
679		12		87	0.992554
699	11		88		0.923564
767	10		90		0.90298
768			90	10	0.90298
889	90		10		0.90298
890	10		90		0.90298
892	90			10	0.90298
896			90	10	0.90298
899	10			90	0.90298
900	10		90		0.90298
901	10	90			0.90298
903	10	90			0.90298
1019		75		25	0.996473
1144		75		25	0.996473
1145	75		25		0.996473
1146	75		25		0.996473
1147	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain