SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6359

Length: 1783 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6359

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase n=1 Tax=Citrus sinensis RepID=A2IB56_CITSI	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80170.1	Pectin lyase-like superfamily protein chr1:30153646-30155683 REVERSE LENGTH=444	55%
RefSeq	Arabidopsis thaliana	NP_565232.1	putative polygalacturonase [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002299601.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQX9

Fln msg: STOP codon was not found. Distance to subject end: 11 aas,

Fln protein: MEMEKSSQLSTLLLLLTIVCVQCKKTHIEGNPFSICEHSNNQGRLWPLSGETENCSPLASTIDLARQFSIEDSSNFEMSDWLPRSSNVVCVDEFGAKGDGENDDTKAFKNAWRKACSSARAVFIVPHGKRYLVKPIKFSGPCKSALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGTFYGSGDQWWAESCKIKKTNPCRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRKCVGVVADHLKVLAPGHSPNTDGIHVSASKDVVIRNTIIGTGDDCISIVSDSFNICTENITCGPGHGISIGSLGEGSAKAQVADVMVHGAFLENTTNGLRIKTWQGSSGFARRITFQNVQMQNVKHPIIIDQYYCDSKKPCLNKTSAVKVSDVAFLNIKGTSASKEVMRFACSQTVPCENIVLADIDLTATSGCTPTTYCENAMGCTTGSVSPRPCILNYNQTGIYELSMRVSTDRRKGK

Protein Length: 482

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTATTCATAACTTCATGGCTGTCGAGACTTTACTCGTGCTACTCATTGTTCCTTATCATAACTTTATGCCTGTCATTCTTCTTGATTGTAACTTTATGCCTGTCGAGATTTTGTAGGATCCGGTTCCATACATTCCATCCTTTGCTTTATCAAGGAGTTATTGTGCCTTTACATGCCATAGAAGCCCTATAGCTCCACAGTTTCTTGCGCTTGATAATTATTTGATGCCATTAAAGGCACACAGAACCTGTGGCGCCACAGTTTCTCCTGTTTTTGGTTCATCTGTCATGGTAATCTGTGTGCTATAAATGA_-_ATGGAAATGGAGAAGAGTAGTCAGTTAAGTACATTGCTGTTGTTGTTGACAATTGTATGTGTGCAATGCAAGAAAACCCACATTGAAGGCAACCCATTTTCAATATGTGAGCACAGTAATAATCAGGGACGACTGTGGCCATTATCAGGCGAAACAGAAAATTGTTCCCCATTAGCTTCAACCATTGATTTGGCACGCCAGTTCAGCATTGAAGACAGTTCTAATTTTGAAATGAGCGATTGGCTGCCCAGATCCAGTAATGTAGTGTGTGTAGATGAGTTTGGTGCTAAAGGAGATGGGGAGAATGATGACACCAAGGCATTTAAGAATGCATGGAGAAAGGCTTGTTCATCGGCTCGTGCAGTTTTCATTGTACCCCATGGAAAGAGGTATCTTGTGAAGCCCATCAAATTCTCTGGTCCCTGCAAATCTGCGTTGACTATGCAGGTGTCTGGAACAATCATTGCCCCTGCAGACCCCAGGGTTTGGGATGGATTAAACAGAAGGCAGTGGCTTCGTTTTAAGGAAGTAGATGACCTGACAGTAGAGGGGGGAGGGACATTTTATGGTAGTGGAGATCAATGGTGGGCAGAATCTTGCAAAATCAAGAAAACAAATCCATGTCGATCAGCTCCAACTGCAATCACATTCGAATTATGCAACAATCTAAGAATGATGAACCTGACTGTAGAGAATAGTCAACAAATGCATATAAAACTCAGAAAATGTGTTGGGGTAGTAGCCGACCATCTCAAGGTTCTTGCACCTGGTCATAGTCCTAATACAGATGGCATTCATGTTAGCGCTTCCAAAGACGTGGTGATTAGGAATACCATTATTGGAACAGGGGATGATTGCATTTCCATTGTAAGCGATTCATTTAACATTTGTACTGAAAACATCACTTGCGGACCAGGTCACGGGATCAGTATTGGAAGCTTGGGTGAGGGAAGCGCAAAGGCCCAGGTCGCTGATGTGATGGTACATGGCGCCTTTCTTGAGAATACAACAAATGGTCTCAGAATCAAGACTTGGCAGGGCAGCTCTGGCTTTGCTAGGAGGATCACATTTCAAAATGTGCAAATGCAGAATGTCAAACATCCCATAATTATTGATCAGTACTACTGTGATTCTAAGAAACCATGCTTAAATAAGACATCTGCTGTGAAAGTGAGTGACGTTGCATTCTTGAACATCAAAGGCACATCGGCAAGCAAAGAAGTAATGAGATTTGCTTGCAGTCAAACTGTTCCATGTGAGAACATTGTCTTAGCTGACATTGATCTTACTGCAACTTCGGGATGCACTCCAACGACATATTGTGAAAATGCCATGGGTTGCACCACAGGCTCAGTCAGCCCTCGTCCATGTATTCTGAATTACAACCAAACGGGTATCTACGAATTGAGCATGCGGGTATCAACTGACAGGAGGAAAGGGAAACC

Fln Alignment:

Contig6359___MEMEKXXXXXXXXXXXXIVCVQCKKTHIEGNPFSICEHSNNQGRLWPLSGETENCSPLASTIDLARQFSIEDSSNFEMSDWLPRSSNVVCVDEFGAKGDGENDDTKAFKNAWRKACSSARAVFIVPHGKRYLVKPIKFSGPCKSALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGTFYGSGDQWWAESCKIKKTNPCRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRKCVGVVADHLKVLAPGHSPNTDGIHVSASKDVVIRNTIIGTGDDCISIVSDSFNICTENITCGPGHGISIGSLGEGSAKAQVADVMVHGAFLENTTNGLRIKTWQGSSGFARRITFQNVQMQNVKHPIIIDQYYCDSKKPCLNKTSAVKVSDVAFLNIKGTSASKEVMRFACSQTVPCENIVLADIDLTATSGCTPTTYCENAMGCTTGSVSPRPCILNYNQTGIYELSMRVSTDRRKGK
B8LQX9______________MRMEKSSLLSALLLLLAILSGQCKKTHIEGDPFSICVHRNHQGRVSPSSVETENCTPLAQTIDLAGQFNNEDNSNSEMNNWVPRSSNVVCVDEFGAKGDGENDDTKAFNNAWSKACSSAPAVFLVPHGKKYLVKPIKFSGPCKSALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGIFYGSGEQWWAESCKINKTNPCRPAPTAITFELCNNLRVMNLIVQNSQQMHIKFRKCVGVKADNLKVLAPGHSPNTDGIHVSASKDVVIKNTITGTGDDCISIVSDSFNIYIENITCGPGHGISIGSLGEGSAKARVADVMVHGAFLHNTTNGLRIKTWQGSSGSARRILFQNVHMENVKHPIIIDQYYCDSKKPCSNKTSAVKVSEVAYLNIKGTSASKEVMRFACSQTVPCENILLADIDLTATSGCTPTTYCENAIGCTTGSVSPHSCLQNYNQKGIFEFGIPVSIDRRKGK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
924			25	75	0.996473
928		25		75	0.996473
1494	70		29		1.0
1587	15			84	0.999986
1590	84			15	0.999986
1591	84			15	0.999986
1620			11	88	0.923564
1644			87	12	0.992554
1656	90		10		0.90298
1657	90		10		0.90298
1692	71		28		1.0
1730	80		20		0.995493
1760			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain